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LotjaGi2g1v0343000.2

Overview

Field Value
Gene ID LotjaGi2g1v0343000
Transcript ID LotjaGi2g1v0343000.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Replication protein A 70 kDa DNA-binding subunit; TAIR: AT5G45400.1 Replication factor-A protein 1-like protein; Swiss-Prot: sp|Q9FHJ6|RFA1C_ARATH Replication protein A 70 kDa DNA-binding subunit C; TrEMBL-Plants: tr|K7LF83|K7LF83_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0343000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:82028960..82034071) extracted from Lotus japonicus Gifu genome v1.2.

TTACCCAATAATTATAATTAACAGTTGAGTTCATAAAAATGTATCCGTACATCGCACGGACAAACATGATCTATACTAGT ATTATACAACATACCAAAACGAGCCTAAATGTTATTTCTTATTTTTTTGTGAACAACAGAGTCCCCATACCCAACAAAAT GAGAGGTAGAACATGACATATTAATTGCGTAGAAGAAAAAAATAATTATTCATCAATATAAATAATAAATTCGTAAATTT TAGAAAGGCAAAACATAGATACAGTTGCTTAGGTGCAGTTTGTACTGTTTGCCAATTAAAATATGACATGTGTATTTTTT TCCACATCAGATTCAACAAAATTCCACCCACCCACCCCACTCCATCTTCTTCCTCTCACCTCCTAAACCACCATCTCCTT CACAGTGAACAATTCAGAACCGCATAAATGGAGCCCCACCGCACCAAGGGCGACCATCGTCCCCTCCCTTGTGTGAGTCC TTCCTTCCTTCGCCGCCTCAACCTCGTCTGGGCCCGATCTCCGCCTTGCCGTCAAGGTTCCGGTGACCTCAACCGTGAGG TGACTGGCGCACCGTCACGCCGTGCCTCGAGCACCCCTATCCCAGATCTCTGCTCATGTCGCCGGTGGGAATTGGAAACC GCGTGGTCACCACCGTCTTCCCAACCTGAATTTGGGTGAGCTTTAGATTTTTGGTGTTGTTAAATCAGATGTGAAATTGG TTGTGGTGGCTAAATTGAAAAGGGTGGGTTTGGCTTTTGGACAATATCAATTTGATGTGGAATCAGATCTAAATTGATGG TCTGGGGCTGCTAGTTTGGGTGGATACAACAAGTTCAACGTGAATGTAAGGAAGAAGATGAAGTGGGGTGGGTGGGTGGG TGGAATTTTGTTGAATCTGATGTGGAAAAAATTTACACATGTCATATTTTTATTGGCAAACAGTACAAACTGTACCTAAG CAACTGTATATAAGTTTTTTCCATTGTAGAATACAGTCAATACACTACTAATTATTTTGTTGAGTTGGGAAAATTAGAAT ATACTACTATTTATGATATTTTATTTAATTTTTTTTAATAATAAGTCGAACGAAAGAGTATAAAGAAAGACATTGGACTC GTGCAACTTCCTAAGGAAGTCTCAAAGGGACACTTTTGGAATTCCAAAAATCTCCAATACCCTTTTCGTCTATTCCGCAA TTAATTTCACTTTCGCAATTCGCGGTTCACGAAACGGACCCAATAATGGCGCCTTCTTTAAATTTGTTTCCACCCCTCAC TCTCACTTTCTAGGGTTTCAACTTCTCTCTCTCACTGTAACCCCCTTTTCTTCCACCGATTCGTTCAATTCGTTAGGGGT TCTCTCTATCAATCGCTGAATTTCGCAGAAATCGGAAAGAAATCAAGCGATTGCAATGGCTGTGAATCTGACTGAAGGTG CGATAATGGCTATGTGCACTGACGGTGTCACTTCCGACCAATTGCAACCGGTGCTGCAAATTATCGACTTGAAGCACGTG CAGACGCAGCAGAACAACGCCACTAAGCGCTATCGCGTTGTCGTCTCCGACGGTTTTCTCTACCAGCAAGGGATGCTCGC CACTCAGAGGAACGAGTTGGTTGATTCTGGAAAGTTGCAAAAAGGCTCCATTGTTAGGCTCACTCAGTTCGCGTGTAACC ATGTCGGGGATCGCATGTGAGTTCATCTTCGCATTTTCTTTTGTTAGTTTTTGTGATTTGAGTTAATGAAATTAGAGATT AGAGATTTTCACTGTTTCATGTTTGTGATTTTGAAATCTTGTGAATTTGAATGCGTCAACGCGTCGATGACGAGTTTTTT TATATCTGGAAATTGGGTGGCTATTATATTATATAGTAGTTGGAGTTTGTAAATTGATATTGTGTTGGTTTATAGTATTA CTCACTAGGTGAATGCTTTTTGTTGCATATTGTTGCCCATTGAGAGGAAATGTTAATATTGTTTGGCTGTTGATTTTGGT GTGTAATTATTTTTAAACAGGATTATTATCATCATTGATCTAGAGATTATAATGGACAAATGTGACCTGATTGGAGAGCC TAAGCCAGCACCCAGAAATGGGGCGCGCGCACAATCTGCTACCGGTCAATCAGGAGTTACCTCTGGGAACTCGCAGCCTT TCAATAATAGTGCAAATGCAGGTGGCGTGACTGCTCGGACAAGTCCTGTTGGGCCTTCTCTGGATCATCCGAAAGTGAAC CCTCCTGCTACTAATGTTTATTCTAGCAGTTCTGACCCTGCAAGATTTGGTGCATCTAATGCCACTGCTGCTGCTAGCAG TGTTTATTCTAGCAGTTCTGACTCTGCAAGATTTGGTGCATCTAATGCCACTGCTGCTGCTAGCAGTGTTTATTCTAGCA GTTCTGACTCTGCAAGATTTGGTGCATCTAATGCCCCTCCTGCTTATCCTAAAGTAGAGTCTGGAGCCAGTTTGCCGAGA TCAACAACACACGGTGGATCTTACGGTGATCAGAACACAGGTTTTCGTAATCCCCAACAATATGAGGCTTCAAGGCCGGT GCCAAATTCTTATGCTCGTACACCTCAGCCTATGTACCGACAGCCATCTCCAATGTACACTAACAGAGGGCCTATAGGAA GAAATGAAGCTCCCCCCCGGATAATTCCGATAGCTGCATTGAATCCATACCAGAATATGTGGACAATTAAAGCCAGAGTA ACCGCTAAGGGAGAACTGAGGGCCTATCATAATGCTCGAGGTGAGGGAAAAGTGTTTTCTTTTGATCTTCTGGATTCTGA TGGGGGAGAAATTCGGGCAACTTGCTTTAATGCTGTGGCTGATCAGTTCTATAATGCAATTGAAGCTGGCAATGTCTATC TGATATCCAGGGGAAGTGTAAAGCCAGCTCAAAAGCAATTCAATCACCTTCGTAATGATCAAGAGCTAACCCTTGACATC ACATCAGTTATACAGCCGTGCCTCGAGGATGATAACTTAATTCCAAAGCAGACATTTAATTTTCGTCCCATAAGCGATAT CGAGAGTATGGAAAACAACAGCATTGTGGATGTGATTGCTGTGGTGACCTCTATTAGTCCTACAGGTTCGATCATGAGAA AAAATGGCACTGAAACACAGAAGAGAACTCTCAAGTTGAAAGACATGTCTGGCCGAAGTGCTGAATTGACCTTATGGGGT AATTTTTGCAACACTGAAGGACAAACACTGCAAAGTATTTGTGACTCTGGGGCTTTTCCAGTTTTGGCAGTAAAAGCTGC CAGAGTAAATGATTTCAACGGGAAGTCTGTCGGCACCATAGCCACTAGCCAGCTATTTGTAGAACCTGATTTTGCAGAGG CTTTTACACTGAGACAATGGTATGACAATGAAGGGAAGAATGTCCCAAGTCTCTCTATTTCCAGAGAAACTTCTAGTGCT GGTAAAACTGATGTGCGGAAGGTTATATCCCAGATTAAGGATGAGAAGTTAGGGACTTCAGAGAAACCTGATTGGATATC TGTCTGTGCAAGTGTTTCATTCATTAAAGTTGATAATTTCTGCTACACAGCTTGTCCTATCATGATTGGGGATAGACAAT GTAACAAGAAGGTTACCAATAATGGAGATGGGAAATGGCACTGTGACAGGTGTGATAAGTCTACTGATGCTTGTGATTAT AGGTACATTCTGCAATTACAGATACAGGATCACACTGGCGTAACATGGGTGACTGCTTTCCAGGAGGGTGGTGAGGAGAT CTTGGGTATGCCTGCGAAAGATCTGTATCATCTGAAATTTGATGAACAAGATGATGAAGGATTTGCAGAAATCATCCGTA AGGTTCTCTTCACTAAATATGTATTCAAGTTAAAAGTAAAGGAGGAAACTTGGAGTGATGAACAACGTGTGAAGTCAACT GTTGTAAAAGCCGAGAAGGTAAACTTCGCATCTGAATCTAGATTTCTCTTGGAATTGATTGATAAATTTAAGTCTGAGAA AGCAGAAGGTGTGACTACTAACTCTGTCACCAATAATACTGGACTGTTGAGTGTTGAAACTGGACAAGCTATGGTACCAG TTTATACCCCTATGAGGAGCAACACTCCTGCTAGCAGAGATTATGGGATGCCAGGAAACCAAATGGGGCAGAGTGGAAAC CAATATAACAGTTCCTTTGCTTCTCCAGGGGCTGCTACTGGCTCATACATGTCATGTAACAATTGTGGAGGCTCTGGTCA TAGCTCTGCTCAATGTGTGAATCTCAGAAGTCAACCTGGACAGGCTGTGGGAGGAGGAACCTTCGCAAATAGCAGGGTAT CTGCTGGATCAAGTGTCGCCTCTGGTGAATGCTATAAATGCCATCAAACTGGTCACTGGGCAAGAGACTGTCCTGGTTTT AGTGCAGCACCGCCGGCTTATGGAAGCGGTAATGGGCAAGAGACTGCTGGATCAGGTGGTGGCTCTGGTGAATGTTTTAA GTGTCGTCAACCTGGCCACTGGGCAAGAGACTGTCCTGGTTTGAGTGCAGCACCGCCGGCTTATGGAAGTGGTAATGTAA TGCAAGGAAGATATGGGGTTGCTCAAAAGCAACAATTTGGAGGGTATTGAAATTTGGCAAGACCGTGCTTGAGTTTATTT TTAAGTTGTTGTCATTTTGTTTCAAGTCAAGTCTTTCTACATGATCAGTTTTGTCTAAACGGTTAAGTGTGTAAATATAG TTGTCATATTTATGTGCTACTGATGTGGCATTTCTCGATGCTGCCATGGTACAAAAAAGAGCCTTGAAAAGCCTCTTGAT TAAGAATGTGTTTGTTTTTAAGTTACGTTCCTTTGGTCATTAATGGTACTCCATGTCGTTTTTCGCATTTGTCTTTGGAA AGCTGGATTTTTTCATGTAGTTTGAGTGAGGTTTGGTTGATATCCAAACACACACAGGTTGTTTTGTGCATAAAATTATG GTGGACTAAAACAAAAGAGAGATTGCTTTTGTCCACCATAATTTTAGCTCACTATTTTTTCTTATCGTGTATCCAAATAT ACATTTGTCAATGAAAAAACTATGGGGAGTGCGCAGGGGTTAAAGATCCATTAAGCACCATTGAGTTTTAAC 

CDS sequence (LotjaGi2g1v0343000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGCCCCACCGCACCAAGGGCGACCATCGTCCCCTCCCTTGTGTGAGTCCTTCCTTCCTTCGCCGCCTCAACCTCGT CTGGGCCCGATCTCCGCCTTGCCGTCAAGGTTCCGGTGACCTCAACCGTGAGGTGACTGGCGCACCGTCACGCCGTGCCT CGAGCACCCCTATCCCAGATCTCTGCTCATGTCGCCGGTGGGAATTGGAAACCGCGTGGTCACCACCGTCTTCCCAACCT GAATTTGGGATTATTATCATCATTGATCTAGAGATTATAATGGACAAATGTGACCTGATTGGAGAGCCTAAGCCAGCACC CAGAAATGGGGCGCGCGCACAATCTGCTACCGGTCAATCAGGAGTTACCTCTGGGAACTCGCAGCCTTTCAATAATAGTG CAAATGCAGGTGGCGTGACTGCTCGGACAAGTCCTGTTGGGCCTTCTCTGGATCATCCGAAAGTGAACCCTCCTGCTACT AATGTTTATTCTAGCAGTTCTGACCCTGCAAGATTTGGTGCATCTAATGCCACTGCTGCTGCTAGCAGTGTTTATTCTAG CAGTTCTGACTCTGCAAGATTTGGTGCATCTAATGCCACTGCTGCTGCTAGCAGTGTTTATTCTAGCAGTTCTGACTCTG CAAGATTTGGTGCATCTAATGCCCCTCCTGCTTATCCTAAAGTAGAGTCTGGAGCCAGTTTGCCGAGATCAACAACACAC GGTGGATCTTACGGTGATCAGAACACAGGTTTTCGTAATCCCCAACAATATGAGGCTTCAAGGCCGGTGCCAAATTCTTA TGCTCGTACACCTCAGCCTATGTACCGACAGCCATCTCCAATGTACACTAACAGAGGGCCTATAGGAAGAAATGAAGCTC CCCCCCGGATAATTCCGATAGCTGCATTGAATCCATACCAGAATATGTGGACAATTAAAGCCAGAGTAACCGCTAAGGGA GAACTGAGGGCCTATCATAATGCTCGAGGTGAGGGAAAAGTGTTTTCTTTTGATCTTCTGGATTCTGATGGGGGAGAAAT TCGGGCAACTTGCTTTAATGCTGTGGCTGATCAGTTCTATAATGCAATTGAAGCTGGCAATGTCTATCTGATATCCAGGG GAAGTGTAAAGCCAGCTCAAAAGCAATTCAATCACCTTCGTAATGATCAAGAGCTAACCCTTGACATCACATCAGTTATA CAGCCGTGCCTCGAGGATGATAACTTAATTCCAAAGCAGACATTTAATTTTCGTCCCATAAGCGATATCGAGAGTATGGA AAACAACAGCATTGTGGATGTGATTGCTGTGGTGACCTCTATTAGTCCTACAGGTTCGATCATGAGAAAAAATGGCACTG AAACACAGAAGAGAACTCTCAAGTTGAAAGACATGTCTGGCCGAAGTGCTGAATTGACCTTATGGGGTAATTTTTGCAAC ACTGAAGGACAAACACTGCAAAGTATTTGTGACTCTGGGGCTTTTCCAGTTTTGGCAGTAAAAGCTGCCAGAGTAAATGA TTTCAACGGGAAGTCTGTCGGCACCATAGCCACTAGCCAGCTATTTGTAGAACCTGATTTTGCAGAGGCTTTTACACTGA GACAATGGTATGACAATGAAGGGAAGAATGTCCCAAGTCTCTCTATTTCCAGAGAAACTTCTAGTGCTGGTAAAACTGAT GTGCGGAAGGTTATATCCCAGATTAAGGATGAGAAGTTAGGGACTTCAGAGAAACCTGATTGGATATCTGTCTGTGCAAG TGTTTCATTCATTAAAGTTGATAATTTCTGCTACACAGCTTGTCCTATCATGATTGGGGATAGACAATGTAACAAGAAGG TTACCAATAATGGAGATGGGAAATGGCACTGTGACAGGTGTGATAAGTCTACTGATGCTTGTGATTATAGGTACATTCTG CAATTACAGATACAGGATCACACTGGCGTAACATGGGTGACTGCTTTCCAGGAGGGTGGTGAGGAGATCTTGGGTATGCC TGCGAAAGATCTGTATCATCTGAAATTTGATGAACAAGATGATGAAGGATTTGCAGAAATCATCCGTAAGGTTCTCTTCA CTAAATATGTATTCAAGTTAAAAGTAAAGGAGGAAACTTGGAGTGATGAACAACGTGTGAAGTCAACTGTTGTAAAAGCC GAGAAGGTAAACTTCGCATCTGAATCTAGATTTCTCTTGGAATTGATTGATAAATTTAAGTCTGAGAAAGCAGAAGGTGT GACTACTAACTCTGTCACCAATAATACTGGACTGTTGAGTGTTGAAACTGGACAAGCTATGGTACCAGTTTATACCCCTA TGAGGAGCAACACTCCTGCTAGCAGAGATTATGGGATGCCAGGAAACCAAATGGGGCAGAGTGGAAACCAATATAACAGT TCCTTTGCTTCTCCAGGGGCTGCTACTGGCTCATACATGTCATGTAACAATTGTGGAGGCTCTGGTCATAGCTCTGCTCA ATGTGTGAATCTCAGAAGTCAACCTGGACAGGCTGTGGGAGGAGGAACCTTCGCAAATAGCAGGGTATCTGCTGGATCAA GTGTCGCCTCTGGTGAATGCTATAAATGCCATCAAACTGGTCACTGGGCAAGAGACTGTCCTGGTTTTAGTGCAGCACCG CCGGCTTATGGAAGCGGTAATGGGCAAGAGACTGCTGGATCAGGTGGTGGCTCTGGTGAATGTTTTAAGTGTCGTCAACC TGGCCACTGGGCAAGAGACTGTCCTGGTTTGAGTGCAGCACCGCCGGCTTATGGAAGTGGTAATGTAATGCAAGGAAGAT ATGGGGTTGCTCAAAAGCAACAATTTGGAGGGTATTGA 

Protein sequence (LotjaGi2g1v0343000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEPHRTKGDHRPLPCVSPSFLRRLNLVWARSPPCRQGSGDLNREVTGAPSRRASSTPIPDLCSCRRWELETAWSPPSSQP EFGIIIIIDLEIIMDKCDLIGEPKPAPRNGARAQSATGQSGVTSGNSQPFNNSANAGGVTARTSPVGPSLDHPKVNPPAT NVYSSSSDPARFGASNATAAASSVYSSSSDSARFGASNATAAASSVYSSSSDSARFGASNAPPAYPKVESGASLPRSTTH GGSYGDQNTGFRNPQQYEASRPVPNSYARTPQPMYRQPSPMYTNRGPIGRNEAPPRIIPIAALNPYQNMWTIKARVTAKG ELRAYHNARGEGKVFSFDLLDSDGGEIRATCFNAVADQFYNAIEAGNVYLISRGSVKPAQKQFNHLRNDQELTLDITSVI QPCLEDDNLIPKQTFNFRPISDIESMENNSIVDVIAVVTSISPTGSIMRKNGTETQKRTLKLKDMSGRSAELTLWGNFCN TEGQTLQSICDSGAFPVLAVKAARVNDFNGKSVGTIATSQLFVEPDFAEAFTLRQWYDNEGKNVPSLSISRETSSAGKTD VRKVISQIKDEKLGTSEKPDWISVCASVSFIKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWHCDRCDKSTDACDYRYIL QLQIQDHTGVTWVTAFQEGGEEILGMPAKDLYHLKFDEQDDEGFAEIIRKVLFTKYVFKLKVKEETWSDEQRVKSTVVKA EKVNFASESRFLLELIDKFKSEKAEGVTTNSVTNNTGLLSVETGQAMVPVYTPMRSNTPASRDYGMPGNQMGQSGNQYNS SFASPGAATGSYMSCNNCGGSGHSSAQCVNLRSQPGQAVGGGTFANSRVSAGSSVASGECYKCHQTGHWARDCPGFSAAP PAYGSGNGQETAGSGGGSGECFKCRQPGHWARDCPGLSAAPPAYGSGNVMQGRYGVAQKQQFGGY 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 37 56 20 -
MobiDBLite 101 173 73 -
MobiDBLite 112 142 31 -
MobiDBLite 158 173 16 -
MobiDBLite 210 286 77 -
MobiDBLite 232 279 48 -
PANTHER 245 784 540 5.9E-238
PANTHER 245 784 540 5.9E-238
TIGRFAM 253 738 486 1.1E-180
Gene3D 295 403 109 7.2E-38
SUPERFAMILY 296 409 114 6.0E-28
CDD 299 402 104 1.73728E-52
Pfam 310 398 89 1.4E-10
Gene3D 409 546 138 5.5E-39
SUPERFAMILY 415 544 130 1.09E-29
Pfam 420 523 104 3.0E-30
CDD 431 538 108 1.49381E-35
Gene3D 547 740 194 5.9E-68
SUPERFAMILY 562 739 178 4.07E-56
CDD 565 738 174 3.147E-68
Pfam 581 732 152 1.7E-51
Gene3D 812 880 69 3.9E-11
SMART 814 830 17 0.058
ProSiteProfiles 815 828 14 8.515
SUPERFAMILY 852 916 65 4.71E-9
SMART 859 875 17 9.2E-5
Pfam 859 874 16 1.6E-5
ProSiteProfiles 860 874 15 10.493
Gene3D 895 939 45 6.2E-8
SMART 900 916 17 9.2E-5
Pfam 900 915 16 7.6E-7
ProSiteProfiles 901 915 15 10.46

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Biological process DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
Biological process DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
Biological process DNA recombination Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0343000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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