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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0343800 |
| Transcript ID | LotjaGi2g1v0343800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ankyrin repeat family protein; TAIR: AT4G19150.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381; TrEMBL-Plants: tr|I3SSN7|I3SSN7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0343800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82094657..82098706) extracted from Lotus japonicus Gifu genome v1.2.
GGGGAGAGGGAGAAAAGAAAAGAGCATTTTGATTTTTAGGAGAAGAGAAGAGCAGAACCAGCAAGGGTTTTTGCAGGGTA ACAGCGTGAAGAAGAAGAAGGAGAGAAGATGGGTAAGGGCAATCCACACAAATCGGGAACCGCCAACGACCTTCATACGG CGGCAAGGTCCGGCGATCTCACCGCCGTTCAGTCAATTTTGATTTCAAATCCTCTCGCCGTTAATTCCAGAGATAAGCAT TCCAGAACACCGTATCCTTCTTCCCTTTCAATAGCGTGATGATTCATCATTTCATTGCATCTATTATCTGATTATTAGGT TAATTCTTACATGCTCTTGAGAATTTCATTTTTCATATTTATGATTCATGTTTATGTTATCTACATGTTAAAATCAATAT AGATGGTTGAATTTTTCTTCAACATTATATGATTATTGTATTTTAAGCTGAATTGAGGAAAAAAGGAAGAAACTTTTATC TGGGTTTAGTAACTAGGGTTTTTCTTGGGAATTTTGAAATTCTGTTATTGCTATGTTGTTTCTTTGACAAACAAATTTGG ACTATAGACTGCATTTAGCAGCATTTGCCGGGCATGCGGAGGTTGTAAGTTATCTGTGCCAGAACAAGGCTGCTGTTGGT GCTGCTGCTATGGATGACATGGCTGCGGTACACTTTGCGGCGCAGAAGGGGCACTTGAGAGTTGTTCAGGCTCTAGTTTC GGCTGGGGCCTCTATCAAATCCTTTACTCGCAAAGGAATGAGTCCGTTGCATTATGCTGCTCAAGGTTCTCATTTGGAGC TTGTTAAGTACTTGGCCAAGAAAGGGGTTAGCCTCAGTGCGAAGACAAAGGCGGGGAAGACGCCTTTGGATCTTGCTACT GATGAAGAAGTTCGCTCTTTTCTGGAGGGATATGAAAGATCAGCTAAGAATGGAGAATCAAAAGATAAGGATGTAGGTGG AGAATCTAAAGATAAAGATGGAGCTGGAGAATCTAAAGATAAGGATGAAGCTGGAGAATCTGATACAAAGGCGCTGTCAT TGGAATCGGAAGGTAATTTGGGTGCTGATGAACGTCCTGCAGCTGTTGTTGATGAAGAAAAAGGTGAGAGAGAGAAGAGG AAGGGTAATGAAGATGATGAACCAAGAGAAGACTTACCACAACCGAAAAAGGCAAGAGTGAAGCTAAGCCATCTCCAAAG TTCAGATGATGCCGAAGAAGAAGAAAACATGTAGGTTGGTAGAGATATAGTAGAAGAAAACTCGGTCATCATATCTGTAA TAGTAGCTGATTTGTAAAGCCCTTTGTTGGGTTAGTAGACTTGGACCAGCTATTCACACTGTTTTATGAGTTATTAACAA ATTCTCCTCCTATCGAGTTATTAACAAATTTTGAACTTATAAAGTTTTAGCTGAAACCAAGGAAGAGGGAATTGGAGAAT AGCTTTTACTTTTGTCACTTCCATCAATACCATATTTCCACATTCTCTATGACATATTGACACTGATTTGTGCCTTCACT GTTTTCACTGTCTTGATACTAACCACTAGAGTCCATCCAGAATGTAATTGAGCTTGATCATGACTTTAATTAAGAGTTGT CTTAATTGGAATCTAAGAACGCCATTAAGCTGAACTACAGCCGAAAATTAATAAGATGACTCAAGTTCTCTTCTAACTTG TATTGCTCGGTTAATTGTCATGTTTGACAACTTTGCAGATTTCGCAGTGAGTAGATTTTATTAGAAACACTACTAGAAGA AAAAATCATATTTAAGTAAAGGAAGAACAGATTGCATAAACATCTATAAAGCACATAATACGCAGAAGTACTTTTAACAA AGCTCGTCATTTAGGATTTTAGGTTTAGTAATTAGTTCTATTGCTATGATGCAGAAGACCACATGACAAACACCATGAAA ACCAAAGACAAATAACATGTTCATATTGCACTGTGTCCTAATAGCGATAAAATTAAAACGCTACAAGCTTTTTGGTAGGA CCATAGATCAGTTTCAGCTTCAGACAAATCATCGATAAATTTCAAGAGAAATCTTTAGTGTCCGTTAACTCCTATCCAGA CCTATCAGTTCAAACCATCAATCACCACCCACTTGCCTCTTCCATGAGTCTTCCACAATCAGCTCATCAACTCCCCAATC TTCATAACTGCAAAATGCAGCAACAAAAAAAAGAAAAAGACAACAGTGAGTATGACACAAAAGCGCGGAATCAGTTTTGA AGTCCCACGAGGAAAGTCCACAACTTGGGCAACTTAAATATTGGGTAGTATTTACCTTCCATCAGGCAAGTAGCGACGGA TGGTAAACGGTATTTTCCGCTCTCGAAGCTCCTTCATGGCAATCTGACCAGTTGGGAGAACAAGACAAGATTTTATATAA TCTAGGTACAATCTCAAATTAAATGTAAAACTATAGCTATCACACTACTGAGTACTGATATAAAATAAAACTGAAGAAAC CACAACAGAGCTAACATATGTTCCTAATAGCAAATACAAAAAAGGGGGTCAAAACTTAAAATAATCAACAGAACAGGCAG GAAATGAAACAGTGATAATTGGAATTGAAAAAGGTTAAACAAGATAAATTGAAGGCAAAGTGAATCAAGAGGCAAGCAGG GCCATAGGTTGGACATGGTTCACATCAACTTATAAAAATTCAGAGACCCCATAATCAAGTTATTCCTTGTATAAAGTGCA CAGTGTATTCTTCACCAAAACTAAACCTGAGAATTGAATCAAATAACATAACAATAGCAAATCACACTCAGTATATAATA CAAAGTACACTGCTCATCTGCGGGAGATGTTTAAATCTTAAACGTTCTTGAACCTGTAACTTCTCATACCAGAAAGTTAT TCCCAAGTAATTGTCAATCTCAAAACAGAGATTAATAAAATTTCATTAAGTTAAGCAACTTAAATCACCAGTTCACCACT TTTAATCACAGGGGCATCAATAATATCCCAAGAGTATTTTATTTATTTACTTACATAATAGCCTCAAACTTGTACCACAG TGTTGACAGCAACAAGAAGCAGCCCAAAAATTAACAATAACAAAGCATCCTTGCATTTGCAAATAATCAATCTAATTGAG GCATTGAGCATGTAGCCATGAACTTCCCACAGTCAAAGCCATTATATTTGTAACAACAAACCAGCACGTATTTGTACACA TATTATCAAGATTTATATCAGAGTTAAACCAGTTTAAAATTCTCAGAATCCTAGCAAACATACCAAAAATCAATAATGCA TAAAATTATCTTCAAAGATCATTCATGTATGCTTCAAGCATTATCTCATTTAGACCCCTCACGAACCCATCAATCAAACA GCAACAAGAGAAGGATGAAGTTCAGTTTGCAGTCCACTTACAGCACATACCATTTAATTCTTTAAAAATAGAAGAGAATA GGTAAAAAGGAAAGGGTGGAGAGGAAAGAAATCAATTACTATAATATCAATGCAACGCGCGGATTATAGTCTATACTTAT ATTTATGAACTTTCTTTAAGTAGGGCATTAGCCATCCTTTCTCAGCTATACTTATATCTAATTTCAGATTACAGACAAGT AGACAACTATTTGGATATTTACAATACAGATACCCTCACCCTCGAAACGATGAAATTGAGAAACAGATGAGTTTGAAATG TACAAGAGCAAAAGCATGAGATTGTAATGGGAACAAAAGGTTTTATTACCTCAAGTGGGTCAGTTTCCCCGGCCAACTCA ACCATGACAGGTGCATTCATGCTGGTCAACCAGAAATACAAAAACTGGTGTTATAGCATCACAAATAATGAAGAAGCAGA ATCTTAGACTCTGAAAAAGTTGAGAAGAAAACCTGATTTGAAGAGCACGGGTACCCAAAATCCTGGCTCTCTCATACTTG GTCATATACTTGGACGTCTTCCGAGGCCTCTGCACTGGTTGTGCCTCTTCCTTCTCCTCAGTCTCAAGAGGTTCTCCTCC ATTTTCTTCCTCCTCATTCTTGTTCTCCAAATCCTCCTCTGCACCTTCCT
CDS sequence (LotjaGi2g1v0343800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAAGGGCAATCCACACAAATCGGGAACCGCCAACGACCTTCATACGGCGGCAAGGTCCGGCGATCTCACCGCCGT TCAGTCAATTTTGATTTCAAATCCTCTCGCCGTTAATTCCAGAGATAAGCATTCCAGAACACCACTGCATTTAGCAGCAT TTGCCGGGCATGCGGAGGTTGTAAGTTATCTGTGCCAGAACAAGGCTGCTGTTGGTGCTGCTGCTATGGATGACATGGCT GCGGTACACTTTGCGGCGCAGAAGGGGCACTTGAGAGTTGTTCAGGCTCTAGTTTCGGCTGGGGCCTCTATCAAATCCTT TACTCGCAAAGGAATGAGTCCGTTGCATTATGCTGCTCAAGGTTCTCATTTGGAGCTTGTTAAGTACTTGGCCAAGAAAG GGGTTAGCCTCAGTGCGAAGACAAAGGCGGGGAAGACGCCTTTGGATCTTGCTACTGATGAAGAAGTTCGCTCTTTTCTG GAGGGATATGAAAGATCAGCTAAGAATGGAGAATCAAAAGATAAGGATGTAGGTGGAGAATCTAAAGATAAAGATGGAGC TGGAGAATCTAAAGATAAGGATGAAGCTGGAGAATCTGATACAAAGGCGCTGTCATTGGAATCGGAAGGTAATTTGGGTG CTGATGAACGTCCTGCAGCTGTTGTTGATGAAGAAAAAGGTGAGAGAGAGAAGAGGAAGGGTAATGAAGATGATGAACCA AGAGAAGACTTACCACAACCGAAAAAGGCAAGAGTGAAGCTAAGCCATCTCCAAAGTTCAGATGATGCCGAAGAAGAAGA AAACATGTAG
Protein sequence (LotjaGi2g1v0343800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKGNPHKSGTANDLHTAARSGDLTAVQSILISNPLAVNSRDKHSRTPLHLAAFAGHAEVVSYLCQNKAAVGAAAMDDMA AVHFAAQKGHLRVVQALVSAGASIKSFTRKGMSPLHYAAQGSHLELVKYLAKKGVSLSAKTKAGKTPLDLATDEEVRSFL EGYERSAKNGESKDKDVGGESKDKDGAGESKDKDEAGESDTKALSLESEGNLGADERPAAVVDEEKGEREKRKGNEDDEP REDLPQPKKARVKLSHLQSSDDAEEEENM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 10 | 151 | 142 | 40.239 | ||
| SMART | 10 | 40 | 31 | 2200.0 | ||
| PANTHER | 12 | 194 | 183 | 2.9E-53 | – | |
| Gene3D | 12 | 178 | 167 | 2.2E-42 | ||
| PANTHER | 12 | 194 | 183 | 2.9E-53 | – | |
| SUPERFAMILY | 13 | 154 | 142 | 7.33E-37 | ||
| Pfam | 15 | 69 | 55 | 8.2E-9 | ||
| ProSiteProfiles | 44 | 76 | 33 | 10.259 | ||
| SMART | 44 | 73 | 30 | 0.0011 | ||
| PRINTS | 45 | 60 | 16 | 5.3E-6 | ||
| SMART | 77 | 106 | 30 | 0.052 | ||
| ProSiteProfiles | 77 | 109 | 33 | 10.686 | ||
| Pfam | 83 | 158 | 76 | 2.7E-12 | ||
| PRINTS | 93 | 107 | 15 | 5.3E-6 | ||
| SMART | 110 | 139 | 30 | 1.3E-4 | ||
| ProSiteProfiles | 110 | 142 | 33 | 12.983 | ||
| MobiDBLite | 163 | 269 | 107 | - | – | |
| MobiDBLite | 163 | 202 | 40 | - | – | |
| MobiDBLite | 218 | 263 | 46 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0343800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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