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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0344300 |
| Transcript ID | LotjaGi2g1v0344300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Formin-like protein; TAIR: AT1G31810.1 Formin Homology 14; Swiss-Prot: sp|Q7G6K7|FH3_ORYSJ Formin-like protein 3; TrEMBL-Plants: tr|M5WXW5|M5WXW5_PRUPE Formin-like protein; Found in the gene: LotjaGi2g1v0344300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82153059..82156401) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTTGGAAAGTGTGAGCAGGTTATTTCTTTCTCGATTCCCTTTTTAGTCTATGAGTATGAATCCTTCAAAATGCTATA TATTGGTTTAATAATTCTTTTATTTTGATATATTCTTCAGTTTTTTATGGAGCTGATGAAGGTCCCACGAGTGGAATCCA AGTTAAGGGTGTTTGCTTTTAAAATAACCTTTAATACTCAGGTATGTTATCTAGGTTATTTTTATCTATGTTTGGTTTTG CATGCTATTGTTATGAATGATATTTCATGTTTAACTACCTTTCTTGCTTGCTTCTCCAGGTGAGCGATTTAAGGTTAAAT TTGAACACAATCAATGGTGCAGCTAGAGAGGTACTGTATTGTTTGATGGCTCTTTTTGAATATTATTAAGGCTTTATTGG GTTGCATCTTTATGTTGTTGCTTATGCTAAAAGGTGAAAGAATCTGGGAAATTGCGTCAGATAATGCAGACTATTCTTAC TTTGGGCAATGCCCTGAATCAGGGAACTGCACGAGGTTTTTTGTTTACTATAACCCTACATGATTAATTTTTAAATTGAC ATGTAATTTCATTTCCTGGTTCACCTCAATATTTTTTACAAAATGAGAATTTCTATTTATGTTGTTCGTAGATTATATTT TCTATGTTGTTCATTGCAGGATCAGCAGTAGGATTCAAGTTGGATAGCCTTCTTAAATTATCTGATACTCGTGCAAGAAA TAACAAAATGACTTTAATGCATTATTTGTGTAAGGTAGATATGTCAATTTTAAATTATAGTTTTCATTTACTATTGTATT TTGAAGTAGTTGTAGACTTCTCTATCCTGATGTTAATATTCTCATATAAAAGATTATGTGAAAGAAAAGAAAAGCCATTT TCTTTCAGAAGAAATGTCACCATAAATTGTCGTAATAAGGCTACTTTGTTCTTTTCTGGGCATTATTAGAGGCTTATGGA TCATAACTTGAACAAGTCTAAGGTGGTATTTGACTTGTTTTTTTGTATTTTCATTTTTGGATGATTAATTTTTTTGCACA AATAATTACAAGATACCACTACTTTTGCAGTAATTTTGAAAGATATATGTCAGAGAGGACTGTAGAAGCATGCTTGGGTG ACTAAAAAATTATTATATCCAATAAGCTTTTTTGTACTAGTTCATATATTAACTTTACAATATCTAAGTTCTAACTTAAA TTTTTATATATTTCCTTTTTGTTCAATTCTAGGAATTTTATATTCTTCTGTTTCTTTGTATTTGCCTTATGAGTACTGTA AAAATTCATCTTTTGTTTGGTATTGGTGCTGCTTTTGATACTATATCTTACCAAATTTTATTCGCTTCACTAGCTGATTG CTGAGAAAATGCCCGAATTGCTAGATTTTGACAAGGATCTTGTCCATTTGGAAGCAGCTTCTAAGGTACTCTCTTCAACG CCAATACTTTCTATTCACTTTTGTGATGATAGATGAGCTCCGGGTTGACTTGCGTTAGGTTAATTGTTTATGGATTTATG TTATCTGTGTCCAATATCTAGATCCAACTAAAAGCATTAGCTGAAGAAATGCAAGCGGTAAGCAAAGGTTTAGAGAAAGT TGAGCAGGAACTCAGTGCTTCTGAAAACGATGGAATTATATGTTCAGGATTTTGCAAGGTAAGGAATAAAAATAGTTCCT TTTACATTTTGCTGATATGCATGCATTATTTGTCTGTTAATCCATTCCTCATCATACCCATCTCATCTCCTCAACTAACA AGTTTATGCATAAAAGAAATTGAAGCCTCGGAAGCAACTTTGGCTTGCCTTTCTATTTGCTCTATGAAAAGACTAACCTT TTGGTTGTAGAAAATAGAATGCGGAGAAAGAAGACACGAGTAAGTTTTGTATTATTTGGTATGAGAGAAATAGGAAAGAA GAAGCGGACAAAAAAATGTCAAGCTCCCTCTCCAGTCCACTTGTTTAATTGGATACCAAAGTGGGAACAAATAAGATTGT GTTTTTTGAAAGAACAAAAAGGCCCCTAGAATTAAAAATGGTATGATGAGACATGGAATTTGATGAGTATGGTGAGATAA GCAAAAAATAGGAGTACTTTCTCTTTCTTTTCTTCTTAATTTGGAAAGAAGATAAAAAGTTAGGGCCCTATGACTTTTTT CTCAGCCAAACATACATGTTTCCCAAATTCTCTGCCTTAAATTTTTTTTCTCCTCCAATTCCGTTCAACCAAACTTTGCA TAAAGAAAATCATGAGATCATACATTCAAGGAATCAAAACAAAACTAGATGTTTACTTAGGGTAATTAGTAATTACTATA TGATAACTTATATTGATAACATCTGTATATTGTGGATCTTCACCAATAGATTATAAGAAGTAAACAACTTCTAGCTAATA GCTATCATGCATCTATCTAAGTTTTTTAGAAGACATGTCTTGTGTCCCCATGATTAATTTCTAGTAATGTATCTCTTTAC AGGTGTTGAAGAATTTTCTGCATACTGCCGAAGCTGACGTGAGGTCACTTACATCATTGTATTCTGAAGTGGTGAGTCCA GTCATAGTTATAGTTTCTCTTTTTTCCCTCCTTTTTTTAGGTGTTGTTCTTGGCTGGGAGATTGAGCATGAGATTGCCTA CTCAGATGAGAGTTTAGTGTATCATCCAGTTAATGGATAGGTCTATGTTGATAACTAATTCTGCCAACATTCTGCTTATT TTTCATTTTTGGTCATAACTTTCTTTTCCAGGGTAGAAGTGCAGATTCTTTGTCCCAGTACTTTGGGGAGGATCCAGCTA GGTGCCCCTTTGAACAAGGTTTGTTATTTTTCAAAGTATATTTTTTTTGTCTAAATCAGAAGTCAGTATTATGAACCATG CATTGTGTTTGAAGAAGGGCATGAAATACACCCGAGTTAATAACAGTGAGTAAGGTCTGTGAAAGCTCTCTGGAATACTT TGAACTTGATTGGTAATGTTTGTATTGCTACTTGATTGTCATGAATAGATGATAAGAGAGACATGAGTCATGCTTTTAGC CTCGATATTTCAAGAAGAGCAGAAAATGAGTTATAAGGCGCAGAGCAACTAACCTTATTATCCTGTGATTGCACATAAAG CACTTCTTTTTTTAAGGAAAATATATGTCGAGATTATATTGATTGTTAAACTTGTGTTCTTGTTGCAGTGACACAGATAC TTGTTGTCTTTGTCAAGATGTTCAAGAAGTCAAGGGAGGAGAACGAAAAACAAGCAGATGCTGAGAAAAAGAAATTAGAA AAAGAAGCCATGAAGGAGAAGGCAGCAATTAACACGCATTCCAAAAAAGAGGGCGTTCGGTAA
CDS sequence (LotjaGi2g1v0344300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGGAAAGTGTGAGCAGTTTTTTATGGAGCTGATGAAGGTCCCACGAGTGGAATCCAAGTTAAGGGTGTTTGCTTT TAAAATAACCTTTAATACTCAGGTGAGCGATTTAAGGTTAAATTTGAACACAATCAATGGTGCAGCTAGAGAGGTGAAAG AATCTGGGAAATTGCGTCAGATAATGCAGACTATTCTTACTTTGGGCAATGCCCTGAATCAGGGAACTGCACGAGGATCA GCAGTAGGATTCAAGTTGGATAGCCTTCTTAAATTATCTGATACTCGTGCAAGAAATAACAAAATGACTTTAATGCATTA TTTGTGTAAGCTGATTGCTGAGAAAATGCCCGAATTGCTAGATTTTGACAAGGATCTTGTCCATTTGGAAGCAGCTTCTA AGATCCAACTAAAAGCATTAGCTGAAGAAATGCAAGCGGTAAGCAAAGGTTTAGAGAAAGTTGAGCAGGAACTCAGTGCT TCTGAAAACGATGGAATTATATGTTCAGGATTTTGCAAGGTGTTGAAGAATTTTCTGCATACTGCCGAAGCTGACGTGAG GTCACTTACATCATTGTATTCTGAAGTGGGTAGAAGTGCAGATTCTTTGTCCCAGTACTTTGGGGAGGATCCAGCTAGGT GCCCCTTTGAACAAGTGACACAGATACTTGTTGTCTTTGTCAAGATGTTCAAGAAGTCAAGGGAGGAGAACGAAAAACAA GCAGATGCTGAGAAAAAGAAATTAGAAAAAGAAGCCATGAAGGAGAAGGCAGCAATTAACACGCATTCCAAAAAAGAGGG CGTTCGGTAA
Protein sequence (LotjaGi2g1v0344300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGKCEQFFMELMKVPRVESKLRVFAFKITFNTQVSDLRLNLNTINGAAREVKESGKLRQIMQTILTLGNALNQGTARGS AVGFKLDSLLKLSDTRARNNKMTLMHYLCKLIAEKMPELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELSA SENDGIICSGFCKVLKNFLHTAEADVRSLTSLYSEVGRSADSLSQYFGEDPARCPFEQVTQILVVFVKMFKKSREENEKQ ADAEKKKLEKEAMKEKAAINTHSKKEGVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 267 | 267 | 1.0E-86 | ||
| ProSiteProfiles | 1 | 256 | 256 | 52.183 | ||
| SMART | 1 | 269 | 269 | 7.6E-4 | ||
| Pfam | 1 | 231 | 231 | 3.3E-76 | ||
| PANTHER | 2 | 250 | 249 | 9.4E-138 | – | |
| SUPERFAMILY | 2 | 257 | 256 | 2.35E-78 | – | |
| PANTHER | 2 | 250 | 249 | 9.4E-138 | – | |
| Coils | 137 | 164 | 28 | - | – | |
| Coils | 231 | 265 | 35 | - | – | |
| MobiDBLite | 232 | 269 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0344300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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