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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0344900 |
| Transcript ID | LotjaGi2g1v0344900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Kelch repeat-containing F-box family protein; TAIR: AT1G31350.1 KAR-UP F-box 1; Swiss-Prot: sp|Q8GX29|SKI25_ARATH F-box/kelch-repeat protein SKIP25; TrEMBL-Plants: tr|A0A1J7GEY5|A0A1J7GEY5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0344900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82201399..82203708) extracted from Lotus japonicus Gifu genome v1.2.
AGAGCAGTTGGAAAGGCAGCATGTCTTTTAATGAATGCTAAAAGCTGAAATTGGCAGACTCCCTTACTTTTGCTTTTTAT TTCCATTCCAACTTTGAATAATCCAAACAAAACCTGCCCACAACTGCATCTCTTTAAACTCACAACCAATTCACACCAAA CCCCACTCATCAAACTCCCATACTAGAAAATCTCATATTAATTCAATCCAACTCCATGGCCACCACCACCACCACCACCA CCGCCGCAAAACGCCATAAACTCCTCCACCACCACCAGGAGGAGGAGGATGAAGAACAACAGCCTCTAATACCTGGCCTC CCAGATCACATAGCTCAAATCTGTCTCTCTTCCATCAACAACCCTTCTCTTCTCTTCAGAGTCTGCCACTCCTGGCGCCA CCTCATCTACTCTCCTTCCTTCCCTCCTTTCCTCTCTCTCTACGCCATTCTCAGCTCCCACTCTTCCCATTCCGGCGACG GCGGCGACTCAGTTCAGTTCCACAATTTCGACCCAATCTCACAAACTTGGCAAACACTCCCTCCTCCGCCGTCATACTCG CCGCTCCTCCTCCGCCACCCCTCCTTCCTCTCCCGCAACCTCTCCATCCAATCCATCTCCCTCGCCGGAAGCCTCATCCT CCTCGCCGCCACCACCTACAACCTCTCCCCCGCTCTCTCCCGCCCCTTCATCTTCAACCCCCTCTCCCGTTGTTGGTCCC TCGGCCCCCCTCTCCCCACCCCCCGCCGCTGGTGCGCCCTCGGCTCCTCCCGCGGCGCCGTCTACGTCGCCAGCGGCTTC GGCTCCATCTTCTCCGGCGACGTCGCCAGGTCATTACAGAAATGGGAACTCGCCGCCGCCTCCGGCGGCGACGAGTGGGA GAAGAAGGCTGAGCTGAAGCATGGGAGGTTCAGCAGGGAAGCGATCGACGCGGTGGGGTGGAGGGGGAAGTTCTGCATGG TGAACGTGAAGGGCGACGCGGCGAAGGAAGGGGCGGTGTACGACGTGGAGGAGGACGCGTGGAAGGAGATGCCGGAGGGG ATGTTGTCTGGGTGGAGAGGGCCGGTGGCGGCGATGGCGGAGGAGGAGATGTACGTCGTCGATGAGGTGAAGGGTGCGGT GAGAAGGTACTTGCCTGAGGAAGATTCATGGGAAGAGGTTTTCGAGTGTGAGAGGCTGAAAGGAGCTGAACAGCTCGTTG CAGAAAAGGGGAAACTCTGTGTCGTTTCTGCCGCCGGGATCTCCGTGGTGGATATCACGGTGGCGCCGCCGAGGGTCTGG GTGGTGGAGTTGCCGGACGGGTTTGAAGCGGTGGCTGTTCATATCTTGCCAAGGATGCCGGTAACTGATTCCGTCAAAGC TTGATTTATTTATTTTTTTGATGTAAAAAAAAAAGAAAATGAAAAGAATGAAAGTGTTTTTATTATTATTTTAATTTTTT GTGATGGTGAGTTTTTGTTGGAAAGATATGATAAAAAGGCAATTTTGTTGTACTTGGAAGGTGGAATAATGGAGTTTTTA ATTATCTTGTTTTGTGGGTTGTGTCCTCATGAGAGCTGAAAGTGAAAATTTGTCTTCAAGTGTGTGGTGGTGTATGAGAT ATTGAGATGAGAGATTTTTATTTTTTCAATTATTTTTGGTTGTGAGTAGTGTGTGGTGTGGGTGTGTGGAATATTTATAG AACGGTGGGGGATGTTGTCATTCCCATTCCAATGGTTGTGTTATGTTCACATTTCAAATGTAAGAAATGCAATTGGAATC GGAGAGAAAGATAGGAAGAAAATAGAGATAAAAATAAAATATGTGAGTGTAAATGTAATATAATATCAGAGTGGCGGCAA TTTATTGGAGATGAAATAAATAATCTTCACCTTCCCTTGTTGTGTTGTTGACTACTAATAATGTCAATGTCAATGTCAAG TGTTTGAGACTAAGCAATGAGATGTGGGCGATTCACGTGGCAATTGGAGTTGGAGCTGAGATCAGACATGAGGTGTGGTT GGGATTTTATGTGCATACTCATCCTTATCACGGAAGTAAAATATTCCTGGGTGTTTGTTTTGGTGCAGAGCAAATGGAAA CCTAATTTACATTTTGATGAGTTATGATATATAGATATTCCTTCCACTTTTTTTCCACTTTCATTTTCTATTATTTTTCT TTTCTCTATCAATTAAATCACATATTATATCTTTACTTTTTCTCTCTTATCTTTTTATATCTTTTTTCCTCCACTTTTTC ACACCTAAAAGATGAGGTGTGAACATATAATTATTTAATTTTGATGAGTTGGATTTGACATGAATTAGAG
CDS sequence (LotjaGi2g1v0344900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACCACCACCACCACCACCACCGCCGCAAAACGCCATAAACTCCTCCACCACCACCAGGAGGAGGAGGATGAAGA ACAACAGCCTCTAATACCTGGCCTCCCAGATCACATAGCTCAAATCTGTCTCTCTTCCATCAACAACCCTTCTCTTCTCT TCAGAGTCTGCCACTCCTGGCGCCACCTCATCTACTCTCCTTCCTTCCCTCCTTTCCTCTCTCTCTACGCCATTCTCAGC TCCCACTCTTCCCATTCCGGCGACGGCGGCGACTCAGTTCAGTTCCACAATTTCGACCCAATCTCACAAACTTGGCAAAC ACTCCCTCCTCCGCCGTCATACTCGCCGCTCCTCCTCCGCCACCCCTCCTTCCTCTCCCGCAACCTCTCCATCCAATCCA TCTCCCTCGCCGGAAGCCTCATCCTCCTCGCCGCCACCACCTACAACCTCTCCCCCGCTCTCTCCCGCCCCTTCATCTTC AACCCCCTCTCCCGTTGTTGGTCCCTCGGCCCCCCTCTCCCCACCCCCCGCCGCTGGTGCGCCCTCGGCTCCTCCCGCGG CGCCGTCTACGTCGCCAGCGGCTTCGGCTCCATCTTCTCCGGCGACGTCGCCAGGTCATTACAGAAATGGGAACTCGCCG CCGCCTCCGGCGGCGACGAGTGGGAGAAGAAGGCTGAGCTGAAGCATGGGAGGTTCAGCAGGGAAGCGATCGACGCGGTG GGGTGGAGGGGGAAGTTCTGCATGGTGAACGTGAAGGGCGACGCGGCGAAGGAAGGGGCGGTGTACGACGTGGAGGAGGA CGCGTGGAAGGAGATGCCGGAGGGGATGTTGTCTGGGTGGAGAGGGCCGGTGGCGGCGATGGCGGAGGAGGAGATGTACG TCGTCGATGAGGTGAAGGGTGCGGTGAGAAGGTACTTGCCTGAGGAAGATTCATGGGAAGAGGTTTTCGAGTGTGAGAGG CTGAAAGGAGCTGAACAGCTCGTTGCAGAAAAGGGGAAACTCTGTGTCGTTTCTGCCGCCGGGATCTCCGTGGTGGATAT CACGGTGGCGCCGCCGAGGGTCTGGGTGGTGGAGTTGCCGGACGGGTTTGAAGCGGTGGCTGTTCATATCTTGCCAAGGA TGCCGGTAACTGATTCCGTCAAAGCTTGA
Protein sequence (LotjaGi2g1v0344900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATTTTTTTAAKRHKLLHHHQEEEDEEQQPLIPGLPDHIAQICLSSINNPSLLFRVCHSWRHLIYSPSFPPFLSLYAILS SHSSHSGDGGDSVQFHNFDPISQTWQTLPPPPSYSPLLLRHPSFLSRNLSIQSISLAGSLILLAATTYNLSPALSRPFIF NPLSRCWSLGPPLPTPRRWCALGSSRGAVYVASGFGSIFSGDVARSLQKWELAAASGGDEWEKKAELKHGRFSREAIDAV GWRGKFCMVNVKGDAAKEGAVYDVEEDAWKEMPEGMLSGWRGPVAAMAEEEMYVVDEVKGAVRRYLPEEDSWEEVFECER LKGAEQLVAEKGKLCVVSAAGISVVDITVAPPRVWVVELPDGFEAVAVHILPRMPVTDSVKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| PANTHER | 3 | 376 | 374 | 2.0E-168 | – | |
| SUPERFAMILY | 20 | 69 | 50 | 7.33E-5 | ||
| Gene3D | 74 | 330 | 257 | 1.5E-17 | ||
| SUPERFAMILY | 89 | 337 | 249 | 7.72E-21 | ||
| Pfam | 132 | 177 | 46 | 3.8E-6 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0344900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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