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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0349100 |
| Transcript ID | LotjaGi2g1v0349100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear pore complex protein; TAIR: AT1G10390.1 Nucleoporin autopeptidase; Swiss-Prot: sp|Q8RY25|NU98A_ARATH Nuclear pore complex protein NUP98A; TrEMBL-Plants: tr|A0A0L9UIU4|A0A0L9UIU4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0349100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82589931..82594186) extracted from Lotus japonicus Gifu genome v1.2.
GAAACAACTCTTATAATATTTCCATCTCAAACAACAACAACGGTTTCTCAATATGTTGCGGAATTTTCACGCTAATAATA TAACGTGTGTGCTGAATTTTCACGCTAATACGGTTACTATATAAACAAGAAATCACGCTCGATTCATTTCAATTCATGCC CACTGAGATTGCATTTGCTTGATCAGAAGAATCAAGGCAAAAGTTTCAGTAAGTGATTTTTTCATTTTTTGGTGTGTTAA TTTCTTTCGCCAATTTCATCTGATTTATTTACATGGAAAACTAACGATTTTGATGTGTGTTTGAGTTAGGGAGTAATAAA CTAGCTACAAAAATGGTGGCATTTGGTTCACAAACTTCCATGTCTAATGGTACTTCTTCCACTGGTGTATTTCGTGCACC ACAAGCCTCTTATCCCTGCCCTTCAACTCCGGGATTCGGTTGTTGTTCGCCATCATCACCAATTGGTAGTAAGTGTGCCT ATTGAAACCTTTTTGTGTTGTATATATTGCTGTCAGCATAGTACTGTCTTCTTTGAAAATGAGTTTATTTGTATTGGGGC ATTGGTGTGTGTAATGTGTGAGGACCACTATTTTCTTGAATTGGAATAACAGTTTTTGGAAATATATACTTTCTGTTACC TCTCTTATGAGATAAAGCAGCATTTTTTATTTGGAGGGGTTGTTTGTTTTTATTTAGTTTTTTCTATTTACATGTTAGTA CATTGATATCATTGGAAACACATGATAATGCCAAATTCCACATGAAACACTTTAGAACAAGAGCATTAGGAAGAGATGAC ATTCCTTTCAGATGTATATACTCTCTATTTGATGCTGTTTTATAGATCACTTTAAAGACTTGAAGATTACCTAACATAAG AATTGAGATTCATGTTAGTTTGTTTGTGGCATACTTGAAATCTTTACAATTAAAGATAGTAATCATTAGTGTGATAGTGT CTGTTTTTATACTTTCTTCCGGTTTATTATTTTATCTGTTGATTTTATGATTAAATCTGAGAACCAACTCACTTGCTTCA TAGGATCATCCTTATATGGTCAGAAGACTGGTTTTGGACGTTTTGCCTCAACTGATACTCAAACAAGTCTATTTGGAGGT GCCACTCAACCATCACAACCAGCTTTTGGAAGCAGTTCCTCAACACCTTTTGGTGCATCAACTGGCACACCTGCATTTGG AGCAACGAGCACCCCCGCTTTTGGTGTAACTAGCACCCCTGCATTTGGGTCAACCTCAAGCCCAACTTTTGGTAACAATG GGAATGCATTTGGTGTGCCAAGTGCTCCTGTGTTCGGAGGTGGGGGAGCATTTAGGGCGTCAAGTAACCCTCTGCTTACA TCTGCATTTTACATCCCTCCGTTTGGTTGTTCAAGTACGTCTGCATTTAGCACTTCAAGAAGTACTCCATTTGGGGTCTC TATAGCTAGTACTCCTGCTTGTGGTGCTTCTAGTACCCCTGCCTGTGGTGCTTGTAGTACCCCTGCTAATGGTGCTTCTA GTACCCCTTCTTTTAGTTTTGGCCCCACAAAAGCTTTTGGTCAGTCTAGTTCTACATTTGGTAGTAGCAGCCCATTTGGG AGTACAACCTCACCCTTTGGAGGTCAGAGTTCTGCATTTGGTGAGTTTTTGAGCTTTTAGAATTTTGACTATGTGATATA TATATTCTTGAGATACAAGGAATTTTAAGAATTAATGCGTGTTTCTGTCATTGTAATTGAAAATGACCTTTACATCCTTT TCTTGTTTGCAGGATCTCCAGCTCCAACTCCGGCTTTTGGAAGTACTGGTTTTGGACACCAACCGGGTGGAAGTGGAGTA GCTAGTTACTCAGCAACAACTGAAGCAGATTCTGGAACCTTCGGACAAACCGCAAAATTCGAGTCCATATCAGCCATGCC TGTTTACAAAGATAAAAGCCTAGAGGAGCTAAGATGGGAGGACTATCAATTGGGAGATAAAGGTTCTTTTCTTTTCTAAT TATAAAATTATAAATACATCCATAATTTTCTGGCTTTCATTGCATCAGTGATGATGATTGATGACATTTACTCAATCTTT TATTTGATTTAAATTTAGGTGGACCACTACCCTCTGCTCACTCAACTGGTATGGCAGCCTTTAGTTCATCTACAATACAA ACAAGCCCCTTTTCTCCTTCACAAGTGTTTGGTCAAACATCAACCAATCCTAGTTCTAACCCATTTGCTCAGCGGCCACA GAATTCTCTTTTTTCTACTCCAACATCTGGTGGAACTTCAGCTGCTCATTTCTTCAAACCATCAGACCCAATTTTTTTTG GCTATCCTCAGCCATCCTTTATCCCTGCAGCCCCTACAAATGCACAGCCAACTTCTACTTTTGGACAGAATACCCCCTTT GGGCAGACTGCATCTTTTGGTCAATCAAACTTGTTCAACTCACCAGTGTCAGGGCTTGCTGGAAATATTTTTTCAACCAG TCCGTCACTCACTTCTACAGCGGTGAGTAGTTTTTTAATTTTCCGTTAAAGATGACAGTTTGGTTATGATCCAAGATAAA GTGGAATCATATATAAGCTTTACTTTACAAACTTATTGAGCTTTATAAATGGTCAGTTATTTCATCATTCTATTAATATT CATATAAATGATAGTATATAGTACTACAACAACCAAGCCTTAACCAGTTCCGATAGGGTTTCAATAAACACCATTCTGCT ATATTAAAATTCAAATTTTCAGTAGAAGTGTATAACCATCTGTCCACTATAGTATATAAAAATTAAGTGAGGCATCTGCT GTTGCAAGCTAAGCTGATAAACTATTATCTGCATGAAATATGATTATACTATTAAAACATTAAACAATATGTTTGCAACC TAAGAAAGTCAGGTACTGTTTATGTTAGAATTATTAAAAGTATGATTCATCTACACTTGTAAACTGAGCAGGGCACTCCA AAAATGGTTAGATTAACACCTTTGTTGGATTATTGGTCTTAATTAATGAGATGTGAACTTAATAGAGCATATTGGCGATA CTTCCAGATAAATATCATTTAACTTAGCATCTCTATATGTTAACTAGTTTGATAAATTGTTTCTTTTCTAGTTTCCTTTG TGTTATGCACGTGTAGTTAGTTTCTCTATATGATTCCCTAGTTGTTCCTACATTTTGACTTTCCAATTTGTTTATTGAAC TTTGTAACTGCAGCAACCCATCTCAACACCTTTCCAATTCCAACCTCCACAAGTTGCTCCTTCAAGTGGTACATTTGGCT TTAGCAACTTTGGCCAGACACAACCTGGTCAGTTCAAAATTTTATTTATGAATGTACTATGTTTTGTTTCGTGTAATGAT TGAAGGATTAATGTTCTGAATTTATTTACTGTCTTTAGTATTTGGTGGAAGTTGCTGCAATTGCACACGAGGAATGTTTG GCCAGAATAATGGTGGCACTCCAGGAATGTTTGGTCAGAATAATGGTGGCACTCCAGGAATGTTTGCTCAGAATAATGGT GGCACTCCAGGAATGTTTGCTCAGAATAATTTTGCATTTCCGTAAGTTACAACTGTCTTATTTATACTGTTTTGACTTTT GAGTGTCCAAAGAGAGGTGACTCTCAGATTAGTCCTATATATCCACTAAACGTTTTTCTATGTTTGGATATTTTTGTTTG ACAGGTCTTCTCGCCAGAGTTCTATGGTTGCACAACCAGCACCTGCTACAGATCCATTGGCAGCACTTCGTGCTTTGCAA GCTTCTTTTGCTGATCTTTCTATTTTTTGTGTTGTTCGTTTGTAGCATTTTTCTTCTTGACATCAACTCCTTCAGCATAT TGCTTTGTGCAAAGTCCAATTGAGAATATACTTTTGTCCGTTTCTTTTTATTGCTTTTAGTTTTTGGACAAACTTTTTAT TGCTTTGTGGGTAGTCCAAGTTTTGATTAATTCACACCTTACTTTCTCTTCAATTTCATTCTCGCTTTATTTTTCTTCTT ATCTCTCATTGAAGCTAGGAGCAGAATAACATCCTCATAAGACAGAGATAAAAGCTTGGGGTTATCCTTCTGATGAAGAA TAATAGAAGGCCAAATGATTCCCACAGGAATTAGCATCATGGTCATGGGCTTTAAAATACTTGAGGTAGAAAGCTCATGG GATCATTCCAAGGTGAGGCAAGGCATATATGGGATATGGTGAGGGCTGAAAACACCTTCTCTAGTCATTGAGATTTGAGA AAATGTCAAGATAGTA
CDS sequence (LotjaGi2g1v0349100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGCATTTGGTTCACAAACTTCCATGTCTAATGGTACTTCTTCCACTGGTGTATTTCGTGCACCACAAGCCTCTTA TCCCTGCCCTTCAACTCCGGGATTCGGTTGTTGTTCGCCATCATCACCAATTGGTAGATCATCCTTATATGGTCAGAAGA CTGGTTTTGGACGTTTTGCCTCAACTGATACTCAAACAAGTCTATTTGGAGGTGCCACTCAACCATCACAACCAGCTTTT GGAAGCAGTTCCTCAACACCTTTTGGTGCATCAACTGGCACACCTGCATTTGGAGCAACGAGCACCCCCGCTTTTGGTGT AACTAGCACCCCTGCATTTGGGTCAACCTCAAGCCCAACTTTTGGTAACAATGGGAATGCATTTGGTGTGCCAAGTGCTC CTGTGTTCGGAGGTGGGGGAGCATTTAGGGCGTCAAGTAACCCTCTGCTTACATCTGCATTTTACATCCCTCCGTTTGGT TGTTCAAGTACGTCTGCATTTAGCACTTCAAGAAGTACTCCATTTGGGGTCTCTATAGCTAGTACTCCTGCTTGTGGTGC TTCTAGTACCCCTGCCTGTGGTGCTTGTAGTACCCCTGCTAATGGTGCTTCTAGTACCCCTTCTTTTAGTTTTGGCCCCA CAAAAGCTTTTGGTCAGTCTAGTTCTACATTTGGTAGTAGCAGCCCATTTGGGAGTACAACCTCACCCTTTGGAGGTCAG AGTTCTGCATTTGGATCTCCAGCTCCAACTCCGGCTTTTGGAAGTACTGGTTTTGGACACCAACCGGGTGGAAGTGGAGT AGCTAGTTACTCAGCAACAACTGAAGCAGATTCTGGAACCTTCGGACAAACCGCAAAATTCGAGTCCATATCAGCCATGC CTGTTTACAAAGATAAAAGCCTAGAGGAGCTAAGATGGGAGGACTATCAATTGGGAGATAAAGGTGGACCACTACCCTCT GCTCACTCAACTGGTATGGCAGCCTTTAGTTCATCTACAATACAAACAAGCCCCTTTTCTCCTTCACAAGTGTTTGGTCA AACATCAACCAATCCTAGTTCTAACCCATTTGCTCAGCGGCCACAGAATTCTCTTTTTTCTACTCCAACATCTGGTGGAA CTTCAGCTGCTCATTTCTTCAAACCATCAGACCCAATTTTTTTTGGCTATCCTCAGCCATCCTTTATCCCTGCAGCCCCT ACAAATGCACAGCCAACTTCTACTTTTGGACAGAATACCCCCTTTGGGCAGACTGCATCTTTTGGTCAATCAAACTTGTT CAACTCACCAGTGTCAGGGCTTGCTGGAAATATTTTTTCAACCAGTCCGTCACTCACTTCTACAGCGCAACCCATCTCAA CACCTTTCCAATTCCAACCTCCACAAGTTGCTCCTTCAAGTGGTACATTTGGCTTTAGCAACTTTGGCCAGACACAACCT GTATTTGGTGGAAGTTGCTGCAATTGCACACGAGGAATGTTTGGCCAGAATAATGGTGGCACTCCAGGAATGTTTGGTCA GAATAATGGTGGCACTCCAGGAATGTTTGCTCAGAATAATGGTGGCACTCCAGGAATGTTTGCTCAGAATAATTTTGCAT TTCCGTCTTCTCGCCAGAGTTCTATGGTTGCACAACCAGCACCTGCTACAGATCCATTGGCAGCACTTCGTGCTTTGCAA GCTTCTTTTGCTGATCTTTCTATTTTTTGTGTTGTTCGTTTGTAG
Protein sequence (LotjaGi2g1v0349100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAFGSQTSMSNGTSSTGVFRAPQASYPCPSTPGFGCCSPSSPIGRSSLYGQKTGFGRFASTDTQTSLFGGATQPSQPAF GSSSSTPFGASTGTPAFGATSTPAFGVTSTPAFGSTSSPTFGNNGNAFGVPSAPVFGGGGAFRASSNPLLTSAFYIPPFG CSSTSAFSTSRSTPFGVSIASTPACGASSTPACGACSTPANGASSTPSFSFGPTKAFGQSSSTFGSSSPFGSTTSPFGGQ SSAFGSPAPTPAFGSTGFGHQPGGSGVASYSATTEADSGTFGQTAKFESISAMPVYKDKSLEELRWEDYQLGDKGGPLPS AHSTGMAAFSSSTIQTSPFSPSQVFGQTSTNPSSNPFAQRPQNSLFSTPTSGGTSAAHFFKPSDPIFFGYPQPSFIPAAP TNAQPTSTFGQNTPFGQTASFGQSNLFNSPVSGLAGNIFSTSPSLTSTAQPISTPFQFQPPQVAPSSGTFGFSNFGQTQP VFGGSCCNCTRGMFGQNNGGTPGMFGQNNGGTPGMFAQNNGGTPGMFAQNNFAFPSSRQSSMVAQPAPATDPLAALRALQ ASFADLSIFCVVRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 63 | 176 | 114 | 2.7E-52 | ||
| PANTHER | 63 | 176 | 114 | 2.7E-52 | ||
| MobiDBLite | 71 | 93 | 23 | - | – | |
| PANTHER | 155 | 552 | 398 | 2.7E-52 | ||
| PANTHER | 155 | 552 | 398 | 2.7E-52 | ||
| MobiDBLite | 227 | 271 | 45 | - | – | |
| MobiDBLite | 227 | 249 | 23 | - | – | |
| Gene3D | 271 | 314 | 44 | 5.7E-10 | – | |
| MobiDBLite | 332 | 371 | 40 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nuclear pore | Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined. | ||
| Molecular function | Structural constituent of nuclear pore | The action of a molecule that contributes to the structural integrity of the nuclear pore complex, a protein-lined channel in the nuclear envelope that allows the transfer of macromolecules. |
Expression pattern of LotjaGi2g1v0349100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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