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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0352000 |
| Transcript ID | LotjaGi2g1v0352000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein FAR1-RELATED SEQUENCE 5; TAIR: AT4G38170.1 FAR1-related sequence 9; Swiss-Prot: sp|Q9SZL7|FRS9_ARATH Protein FAR1-RELATED SEQUENCE 9; TrEMBL-Plants: tr|I1LIE2|I1LIE2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0352000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82807026..82810746) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGTTTGAACCTCTGGCTCTAAGCAATGAGGTTATTGAATTTGATATGATTGGTTTGGGGGATGATGCTGCTGCCAT TGACATTGAGCATCCTGTTGAAGATGATGATGAGTTTGTTAATGGGGGAAACAATGATCCTGTTTTTGCTATTACCAATT CAGCTGCTACTGGGGGACCTCTCATACCTGGAGGGGGTGACTCAATTCTTGAACCTTGTCAAGGTATGGATTTTGAATCA GAAGAGGCTGCTAAGGCTTTTTATAATTCGTATGCTCGCCGTGTTGGCTTTAGCACGCGGGTGAGCATGTCTCGCCGCTC CAGGCGAGATGGTGCTATAATTCAGAGGTCTTTTGTGTGTGCCAAGGAAGGTTTTCGTGTCGAGAAGGAGAGGCATCTTG AGGGCAGAGTCAAGCGGCCTCGTGTCGAGACTCGTGTTGGTTGCAAGGCCATGTTGGTTGTGAAAATACAAGATTCTGGC AGATGGGTTGTCTCTTCCTTTGTCAAGGAACACAACCATGAATTGGTTCCGCCTGATAAGGTGCACTGCCTTCGCTCTCA TCGCCATGTTTCAGGTCCAGCTAAGTCATTGATTGATACCTTGCAGGGTGCCGGAATAGGGCCCAGTGGAATTATGTCTG CTCTTGTCAAAGAATATGGTGGAATTACCAATATCGGTTTCACCGAGCGTGACTGTAGGAATTATATGAGGAGCAGTAGG CAAAGGACCCTTGGAGGTGACACTCAAATCCTCTTGGATTACTTTAAGAGCAAAGAAGCAGAGAATCCTTCATTTTTGTA TGCTGTGCAGGGTGATGAAGATAATTGCATGAGTAATATCTTATGGGTTGATCATAAGGCCAAGACTAACTACACTTACT TTGGTGACACTGTCACTTTTGACACAACATATAGGTCGAACCGCTATAGATTGCCTTTTGCACCTTTCACTGGAGTAAAT CATCATGGACAGCCTGTCTTATTTGGTTGTGCTCTCCTGATTAATGAGTCCGAGGCATCTTTTGTCTGGCTGTTCGAAAC CTGGCTTGAAGCAATGTCAAGGCGACCTCCAGTTTCAATTACTACTGATCATGATAGGGTGATTCGTGGAGCCATCAACC ATGTCTTTCCTGATACCCGTCACCGATTTTGCAAGTGGCACATTTTTAAAGAATGCCAAGAGAAGTTGTCTCATGTGCTT TCTGAACACCATGATTTTGAAGCTGACCTCCATAAATGTGTTAACCTAACAGAGTCCATTGAGGAGTTTGAGTCTTGTTG GTCCTCTCTAATTGATAGGTATGGTCTCAGAGAACATGAATGGCTCCAAGAGATTTATGGTTATCGGCGGCAGTGGGTTC CAGTGTACTTGAGGGACTCATTTTTCGCAGAAATGTCAATAACACAACGGAGTGATAGCATAAACTCTTATTTTGATGGC TATATCAATGCATCAACAACACTTCAGCTTTTTGTTAAACAGTATGAGAAGGCTTTGGAGAGCCGTTATGAGAAAGAAGT CAAAGCTGATTATGACACAATAAACACTGCTCCACTACTGAAGACCCCATCTCCCATGGAGAAACAGGCAGCTGGAGTTT ACACAAGGAGGTTGTTTATCAAATTTCAGGAAGAGTTGGTTGAGACATTAACTTTCTTGGCAAACAAAGTAGGTGAAGAA GAAATGATTACTGTGTATAGAGTAGCCAAATATGGGGAAAGTCACAAGGCATACTTTGTCAGATTTAACTTTTCTGAGAT AAAAGCTACTTGTAGTTGCCAGATGTTTGAGTTTTCTGGTATAGTTTGTCGACATATATTGACTGTTTTTAGGGTGACAA ATATTCTTACCTTACCATCTCATTATATCTTAAAAAGATGGAGCAGGAATGCCAAAAGTGGTGTCATACTGGATGACCAT ACTACTGATTTGTTAAATGGTGGACAAGAATCTCTAACTATCCGATACAATAATCTTCGCCGTGAGGCCCTTAAGTATGC TGATAAGGGAGTAAGCTCTCCAAAAGTTTATGATGTGGCTATGAGTGCTCTTCGGGAGGCAGCAAATAAAGTGGAAGCTG CGTCAAAAAATGGTGGAAGACTGGTTATTTTGGATGGAGCTTGTAAAGAAGACCTTCATCAGGGAAACGAAGCAATAACA AGTTGTAGTAATGCTCAATTAAGTTCACAACTATCTTCGTCTACGGTATGTTGTTCTTGGTTATAGCAGTTTCTTTCTGC AGCATATTTTTTTGTCCCTTTTTTGTTTATAGAATTTTGAATGTGCTGCTTTCTGCTAGCAAAAATTGCTAAACCCTTTT GGCCCATTTGTTGTCCAATTGCATCAAACATAGGTCTTACCTGCAACAACGGAGTATATGATTTGATGATTTTAGCACAA ATAATAGCATATATACTGTATTAAACTGACATGGTAGGATGAATATAATCTAAAGTAAGTCGGAGCCTAGTTGATGTAGG ATAAAGAGAGTTCTGACACTGAGAGAAAAAGAAAAGGAGATTAGGGGAGGAAAAGAAAGTTTGGAGAGTATAGATAGAGT AAAATCCCCATTCAAAAATCAAAATCACACCAGTCAAAATTACTCTGAATTGCGATTAAAAGTAACTTTTAATTTTGAGT CGATTAGAACAAGATCTCTTGAATCCAACTCAAACCAAATCCTAGTCAAGTTCAATTCCTTTACAAGTGTAAATCACATA ATACATCGACATTAAGTTCCAAATACATAATGCCAAATTTCTATTCAACTTTCGTTAAAAAATCAGCTTATCAACTTTCT GATTTTTTTAGTCAAACATCTGTTGTTATGATTTAAGACAAGATGGCTTAGAAAACAGAATAAAATATGAATTTGCGGTA TCTGGTTTTAATAAAAGGAAAAGTCAAACTAAAGGGGTTCAATGTGTTAAGATTACCGATTCACCATTTCTTTTGCTGGA AGAATCACCATAAATACTGTTTAAGGGGAGCCTTGATGGCTGATGCAATAGTTGATGTTGTCTCTGTGTAACTAGGAGGT AACAAGTTGAATCATTCTCTTACAAGTGAAAGGTAACATTACCTATAATAGACCGCAATGAGTTTGACCCTTTAGCCTTT GCAGCTCCGCGCTATTGTAGAAGCTTTATAGAACAAAGTTGCCCCTTCTTTATTGTGACCACTTCTGCCACCATCATTGT ATTACAGAGACAAGTCTTTATTGTTGATATTGTGGATATATTTCTAAAAAATATAACATAGTTGATTTTAATAATCTCAA AAATCCTTACAAAAAATGAGTAAGAGATGATTGGAAAGTTATGTGATATGCTCTCATTTTAAAACATTATTGATTAAGGA ACTTAAAATAAGAAAATTACTCCTTCAACCACCCCCCCCTCCACCACCCTATTATTCATTCAATCTCGATTTTTAAACAC CGCAACAATAACGTCAGCCTACATACAGCATATTTTTCTCTCCCTCTCTTTTCATATCACACCACATCATATCTACAAAA CATTCCTATTTATGTTGTGTGATTTTGTTACAGGATGACCATGACAGAACAATTGAAAAGCTGACACATCAACTTGACCG AGCAAGGAAGAAGTGTGAAGTTTATAGGTCCAACTTGCTGTCAATTTTAAAAGCCATTGACGAGCAGAAGCTAGAATTAT CAGTTAAAGTTCAAAATATCAAGTTAGAGATGAAAGAGTGA
CDS sequence (LotjaGi2g1v0352000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTTGAACCTCTGGCTCTAAGCAATGAGGTTATTGAATTTGATATGATTGGTTTGGGGGATGATGCTGCTGCCAT TGACATTGAGCATCCTGTTGAAGATGATGATGAGTTTGTTAATGGGGGAAACGATGACCATGACAGAACAATTGAAAAGC TGACACATCAACTTGACCGAGCAAGGAAGAAGTGTGAAGTTTATAGGTCCAACTTGCTGTCAATTTTAAAAGCCATTGAC GAGCAGAAGCTAGAATTATCAGTTAAAGTTCAAAATATCAAGTTAGAGATGAAAGAGTGA
Protein sequence (LotjaGi2g1v0352000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEFEPLALSNEVIEFDMIGLGDDAAAIDIEHPVEDDDEFVNGGNDDHDRTIEKLTHQLDRARKKCEVYRSNLLSILKAID EQKLELSVKVQNIKLEMKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 43 | 98 | 56 | 7.3E-14 | – | |
| PANTHER | 43 | 98 | 56 | 7.3E-14 | ||
| Coils | 44 | 71 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0352000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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