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LotjaGi2g1v0354000.3

Overview

Field Value
Gene ID LotjaGi2g1v0354000
Transcript ID LotjaGi2g1v0354000.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Phosphatase 2C family protein; TAIR: AT3G51470.1 Protein phosphatase 2C family protein; Swiss-Prot: sp|Q9SD02|P2C47_ARATH Probable protein phosphatase 2C 47; TrEMBL-Plants: tr|A0A1J7I7H5|A0A1J7I7H5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0354000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:83042232..83046100) extracted from Lotus japonicus Gifu genome v1.2.

GAAAAAAAAAGGAAACAAAATGGGGATGGAATCTAGTCAAGTTTTATATAAATTTAGACTAATGCATCATGACAAGTAAA GCAAAACATATGCAGATGTGAAGTTTATGATAGAATCTAGATCATAGATTCTAAGATGTTGTAGCATTACCACAAGGCCA AACGGTCAACTAGTAACACAAATGGCAGCAGAGGAAGCCACGTGCCACTCCTCCAATCTCCCCTTACAATGGCGAGGCGC AAAACTTGCAATGGCCAATCAGTTCATGTATACATTTTACCTCCCACTTCTTGTGATCCCTCCATTTGGTGGGTCTTCAT TTTTCTTTCACATCTCTAATGCTACAACAACAACATGTGCTTGGTTCTGTGGATTGATGGTGGTACAAGCTTACAGAGGC TACACTTGTTTCCTTGGTCACAAAAATACCTCATATTGTGATCCATGTTGTTGTGTCTTCTTTCACGTGCAACCCTTTTT TCTTGGATCATGTGCCAACCACGTTTGGAATAGCTGTTTCTTGCTGTTCATGATCTTGTTCTAGGGGGTTGTGTGAGAAT GGCTTCTCTGTCGGTTATGGCGGTTGTTTGAAGTTTCAACCTTCTTCTTTTTCTTCATCTGGGAAACTTGTGGTGTCTAT AAAGGACACATATTTGAGGTTTTATTTAAGAATTTTTGTGTTATGGGACAAGAATGGCACCAGGTACTGGTTGCCCTTCT CAGACAGAAACAGCTATGTTGAGTGGTGGAGCTGGTGGGATCCCCAGGGGCAGTAGTGAGTGTTCCATGGAGGATCAGAA TGGTGATACGCTTGGGAATTTGAATCAGAACATTGGGAAGCCTCCAAGGGATCTTTCAGCTATGCGCCATTGTAGCAGTT CTTCATGGTTGGCTGAATCGGTTAGTATATTATCAACCAAATCCCATGTTGTTTTTGTATTCAGGCTTGTTTTGTGGATT GGATCTTTGTGTTTGAAAACTCTTCTACAATTTGATTCTGAGGTGAGAATCAATTCTGGGTAGGAGTAGCTTCCTCATAG TGGTTTTTCTGTTGGCTATGGCAGTTGTTTGAACTTTTTTTTCTTTATCTGGGAAACTTGTGGTGTCTATAAAGGACAAA TCTTTGAGCTTTTATGTTCAGGCTTGATGTGTGGATCAGATTGATTCTGAAACCAGAATCAATTCCAGGTAGAAGTAACT TCTGGGCTGGTTTCAAAATGGATTCTGGTGAAAGAGAAGCCGATCCAAACATGCTAACAATCAAAAGTGCTCAGGCTAGA AGGCAAAATATGTTATTATGGTTAGGATGAATGTGCTGATGGATTTTGCAGCATTTGAAGCCTTGAAATGCTTGGGTTAC CATGGTGATGATTTAGGATTATGTGGATTGTAGTTTTACAATTCCAACCTCAATAAGTTGATTGTCATTTGTGTGTGTAT TTGGTTTTTTCCGATTGTATTAAGGCAAATGTGATTTCACATGGACCCCAATACTTAAATGGGGAAATCTTGCGGCCTTG AATTCAACGTAGATTTTGCCTAAAAAAAAGAGTCCAATATGATCGAGTTCAATAAAAATTGAAACACACATTTCAGCCCA ACCCGTCCCTTTTTTTCTCCTTAGAAATGTGTGGCAGAAAAATATATAAACTGCAGCAAGCCACTATTAAACTTTGAGCA ACTTCCTGTGCCATTTTGACCGGTTTGTTTCAAGTAGAGTGTCTGTAACAACCCATACAAAGAAAATGGGTTGTTTATTT GTTCTAGTAGTGGTGTGTAATTTTCTAACCCATTTAGTTACATCTTGTGTCTAGGAACCAAATATTATTACTGTTGGCTT AAAACCAAGCACAGAGGAAAAATCAGAGTTTTCACTTTCATTGCGATCAGGAAGCTTTTCTGATAAAGGACCAAAGCAAT ATATGGAGGATGAGTTCATATGTGTTGATGTTCTTCGTGAATGTGTTGGTCCAGGATCAGACCTTCCTTCTCCAGCAGCA TTTTATGGGGTATGTATGTTTCTTCATGTTGAATTTAGATCAATTGTATTACTCTCCTAATGGAATTGGCCAATTGTCTT CATATGTTGCATTTTACATGCCTTTTAGATACTCATGGAGGTTAATATACAGGTATTTGATGGACATGGTGGTGTTGATG CTGCATCATTTACCAGAAAGAACATCCTTAAGTTTATAATTGAAGATCCCCAGTTCCCATCTGGCATTAAGAAAGCAATT AAGAATGCATTTGTGAAGGTTGACAATGCATTTAGAGATGCTAGTGCCCTTGACAGCTCTTCAGGCACCACCGCCCTAGC AGCCCTTGTTCTAGGAAGGTGAGGACTCAGAACCATTGTCATCAATTCAGACCTAACAAGTTTCTACTTTTACATAGGTT TTCATTTATGCTAGTACAACTACAGATTAATAATTTTACTGTGCGCTTGGGTAAATAGCTTATTCAAGGCGCTTATGTCA ATAAGTACTTATCAGATATCACATAAGTGCTAATTCATAAGCTCATTTGAGATGTTTATTAAAATAAGTTCAAAAGAAGT TTTAAGTAGGTATAAGCTGTTATTCATAATGAAAAACTTATCAAGATAAGCTCAAAAGTGTAGGTTGTAAGCTGTTTTCT TAAGTTTAATAAAATATCTGCTTCAGTGATTACTATATAAGATAATCTTAAATAAGCTCTTCCAAAAGTGCCTTAGTTGC TCTAAAGCAATAATTGTACATTACCTCTATTTTGCAGTGTCATGCTGATTGCCAATGCAGGGGATTCTCGTGCTGTATTG GGCAAAAGGGGCAGAGCCGTTGAACTTTCCAAAGACCACAAACCAAATTGCACATCAGAAAGACTGAGAATTGAGAAACT GGGTGGTGTGATCTATGATGGATACCTCAATGGCCAACTATCAGTGGCTCGCGCTCTCGGAGACTGGCATATCAAAGGCG CTAAAGGCTCGAAAAGCCCCTTGAGCTCCGAGCCTGAGCTCGAGGAGATTATCCTGACAGAAGAAGATGAGTTTTTGATA ATGGGGTGTGATGGATTATGGGATGTCATGAGCAGCCAGTGTGCTGTTACAATGGTGAGGAGGGAGCTCATGCAGCACAA TGATCCCAACAAGTGTGCAAAAGTGCTCGTTGCTGAGGCCCTCCAACGCAACACGTGCGACAATCTCACAGTTGTGGTGG TTTGTTTCTCTAAAGATCCACCTCCTAAAATTGAGATTCCTAGATCACATAGGAGGAGGAGCATTTCTGCTGAAGGCCTT GATCTTCTCAAGGGTGTCTTGAATGGTAGGTGAATAAAACTTGATAGTAATTTGTACAGATTGATTGAGTTGGACATTCA TACAAACAGTTGGTGGGGATTTTTCAGACTAATTGCTATCCCTGCTACTTTGAGGATTGCTGCTTGCTTACATGCCAGAT TGCCAGTGATAATGTCCCACAACTTGTAACAACTTGGATTTGGAGGTACCAACCAGAATCAAATCAAAGCCTTCTTGCCT TGCACTATATAATTATTTCAAGAAGCTATCACCCTCCCTGCTTTATACCTACACCTTTTGGCCTTGCAAGCTTCTCAATT TTACCATTTTCTACGGCAAGAAGTGATACAAGTACACAAGAGCATAACAGCAAACTTTCACTGACTGTTGAAAATAACTA TGAAGTAAACTAAATGAATGTATTCTTTTCTTTTTGTTAGTGTATCTTTCACAACCTTTTTGAACCATTGTAAATTTGTA AGCACCTTCCACTTTGTTTTCTTATTGTTGTGTATTTGTCTTTGACCTGTCTTTATTTTTTCTTTACAAAAAATTAATAA CATAATTTGTAGACACTCAATACTACCTC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0354000.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCACCAGGTACTGGTTGCCCTTCTCAGACAGAAACAGCTATGTTGAGTGGTGGAGCTGGTGGGATCCCCAGGGGCAG TAGTGAGTGTTCCATGGAGGATCAGAATGGTGATACGCTTGGGAATTTGAATCAGAACATTGGGAAGCCTCCAAGGGATC TTTCAGCTATGCGCCATTGTAGCAGTTCTTCATGGTTGGCTGAATCGGAACCAAATATTATTACTGTTGGCTTAAAACCA AGCACAGAGGAAAAATCAGAGTTTTCACTTTCATTGCGATCAGGAAGCTTTTCTGATAAAGGACCAAAGCAATATATGGA GGATGAGTTCATATGTGTTGATGTTCTTCGTGAATGTGTTGGTCCAGGATCAGACCTTCCTTCTCCAGCAGCATTTTATG GGGTATTTGATGGACATGGTGGTGTTGATGCTGCATCATTTACCAGAAAGAACATCCTTAAGTTTATAATTGAAGATCCC CAGTTCCCATCTGGCATTAAGAAAGCAATTAAGAATGCATTTGTGAAGGTTGACAATGCATTTAGAGATGCTAGTGCCCT TGACAGCTCTTCAGGCACCACCGCCCTAGCAGCCCTTGTTCTAGGAAGTGTCATGCTGATTGCCAATGCAGGGGATTCTC GTGCTGTATTGGGCAAAAGGGGCAGAGCCGTTGAACTTTCCAAAGACCACAAACCAAATTGCACATCAGAAAGACTGAGA ATTGAGAAACTGGGTGGTGTGATCTATGATGGATACCTCAATGGCCAACTATCAGTGGCTCGCGCTCTCGGAGACTGGCA TATCAAAGGCGCTAAAGGCTCGAAAAGCCCCTTGAGCTCCGAGCCTGAGCTCGAGGAGATTATCCTGACAGAAGAAGATG AGTTTTTGATAATGGGGTGTGATGGATTATGGGATGTCATGAGCAGCCAGTGTGCTGTTACAATGGTGAGGAGGGAGCTC ATGCAGCACAATGATCCCAACAAGTGTGCAAAAGTGCTCGTTGCTGAGGCCCTCCAACGCAACACGTGCGACAATCTCAC AGTTGTGGTGGTTTGTTTCTCTAAAGATCCACCTCCTAAAATTGAGATTCCTAGATCACATAGGAGGAGGAGCATTTCTG CTGAAGGCCTTGATCTTCTCAAGGGTGTCTTGAATGACTAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0354000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAPGTGCPSQTETAMLSGGAGGIPRGSSECSMEDQNGDTLGNLNQNIGKPPRDLSAMRHCSSSSWLAESEPNIITVGLKP STEEKSEFSLSLRSGSFSDKGPKQYMEDEFICVDVLRECVGPGSDLPSPAAFYGVFDGHGGVDAASFTRKNILKFIIEDP QFPSGIKKAIKNAFVKVDNAFRDASALDSSSGTTALAALVLGSVMLIANAGDSRAVLGKRGRAVELSKDHKPNCTSERLR IEKLGGVIYDGYLNGQLSVARALGDWHIKGAKGSKSPLSSEPELEEIILTEEDEFLIMGCDGLWDVMSSQCAVTMVRREL MQHNDPNKCAKVLVAEALQRNTCDNLTVVVVCFSKDPPPKIEIPRSHRRRSISAEGLDLLKGVLND
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 54 54 - –
MobiDBLite
mobidb-lite
1 16 16 - –
MobiDBLite
mobidb-lite
29 49 21 - –
PANTHER
PTHR13832:SF673
66 369 304 2.8E-151 –
PANTHER
PTHR13832
66 369 304 2.8E-151
IPR015655
Gene3D
G3DSA:3.60.40.10
76 358 283 5.8E-84
IPR036457
SMART
SM00332
83 351 269 3.7E-93
IPR001932
SUPERFAMILY
SSF81606
86 354 269 2.49E-74
IPR036457
CDD
cd00143
93 353 261 1.80049E-86
IPR001932
ProSiteProfiles
PS51746
93 353 261 49.067
IPR001932
Pfam
PF00481
100 345 246 8.7E-72
IPR001932
ProSitePatterns
PS01032
132 140 9 -
IPR000222

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004722
Molecular function Protein serine/threonine phosphatase activity Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate.
Subterm of
GO:0006470
Biological process Protein dephosphorylation The process of removing one or more phosphoric residues from a protein.
Subterm of
GO:0043169
Molecular function Cation binding Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0354000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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