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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0354000 |
| Transcript ID | LotjaGi2g1v0354000.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphatase 2C family protein; TAIR: AT3G51470.1 Protein phosphatase 2C family protein; Swiss-Prot: sp|Q9SD02|P2C47_ARATH Probable protein phosphatase 2C 47; TrEMBL-Plants: tr|A0A1J7I7H5|A0A1J7I7H5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0354000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:83043781..83045544) extracted from Lotus japonicus Gifu genome v1.2.
GAGTCCAATATGATCGAGTTCAATAAAAATTGAAACACACATTTCAGCCCAACCCGTCCCTTTTTTTCTCCTTAGAAATG TGTGGCAGAAAAATATATAAACTGCAGCAAGCCACTATTAAACTTTGAGCAACTTCCTGTGCCATTTTGACCGGTTTGTT TCAAGTAGAGTGTCTGTAACAACCCATACAAAGAAAATGGGTTGTTTATTTGTTCTAGTAGTGGTGTGTAATTTTCTAAC CCATTTAGTTACATCTTGTGTCTAGGAACCAAATATTATTACTGTTGGCTTAAAACCAAGCACAGAGGAAAAATCAGAGT TTTCACTTTCATTGCGATCAGGAAGCTTTTCTGATAAAGGACCAAAGCAATATATGGAGGATGAGTTCATATGTGTTGAT GTTCTTCGTGAATGTGTTGGTCCAGGATCAGACCTTCCTTCTCCAGCAGCATTTTATGGGGTATGTATGTTTCTTCATGT TGAATTTAGATCAATTGTATTACTCTCCTAATGGAATTGGCCAATTGTCTTCATATGTTGCATTTTACATGCCTTTTAGA TACTCATGGAGGTTAATATACAGGTATTTGATGGACATGGTGGTGTTGATGCTGCATCATTTACCAGAAAGAACATCCTT AAGTTTATAATTGAAGATCCCCAGTTCCCATCTGGCATTAAGAAAGCAATTAAGAATGCATTTGTGAAGGTTGACAATGC ATTTAGAGATGCTAGTGCCCTTGACAGCTCTTCAGGCACCACCGCCCTAGCAGCCCTTGTTCTAGGAAGGTGAGGACTCA GAACCATTGTCATCAATTCAGACCTAACAAGTTTCTACTTTTACATAGGTTTTCATTTATGCTAGTACAACTACAGATTA ATAATTTTACTGTGCGCTTGGGTAAATAGCTTATTCAAGGCGCTTATGTCAATAAGTACTTATCAGATATCACATAAGTG CTAATTCATAAGCTCATTTGAGATGTTTATTAAAATAAGTTCAAAAGAAGTTTTAAGTAGGTATAAGCTGTTATTCATAA TGAAAAACTTATCAAGATAAGCTCAAAAGTGTAGGTTGTAAGCTGTTTTCTTAAGTTTAATAAAATATCTGCTTCAGTGA TTACTATATAAGATAATCTTAAATAAGCTCTTCCAAAAGTGCCTTAGTTGCTCTAAAGCAATAATTGTACATTACCTCTA TTTTGCAGTGTCATGCTGATTGCCAATGCAGGGGATTCTCGTGCTGTATTGGGCAAAAGGGGCAGAGCCGTTGAACTTTC CAAAGACCACAAACCAAATTGCACATCAGAAAGACTGAGAATTGAGAAACTGGGTGGTGTGATCTATGATGGATACCTCA ATGGCCAACTATCAGTGGCTCGCGCTCTCGGAGACTGGCATATCAAAGGCGCTAAAGGCTCGAAAAGCCCCTTGAGCTCC GAGCCTGAGCTCGAGGAGATTATCCTGACAGAAGAAGATGAGTTTTTGATAATGGGGTGTGATGGATTATGGGATGTCAT GAGCAGCCAGTGTGCTGTTACAATGGTGAGGAGGGAGCTCATGCAGCACAATGATCCCAACAAGTGTGCAAAAGTGCTCG TTGCTGAGGCCCTCCAACGCAACACGTGCGACAATCTCACAGTTGTGGTGGTTTGTTTCTCTAAAGATCCACCTCCTAAA ATTGAGATTCCTAGATCACATAGGAGGAGGAGCATTTCTGCTGAAGGCCTTGATCTTCTCAAGGGTGTCTTGAATGGTAG GTGA
CDS sequence (LotjaGi2g1v0354000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTGGCAGAAAAATATATAAACTGCAGCAAGAACCAAATATTATTACTGTTGGCTTAAAACCAAGCACAGAGGAAAA ATCAGAGTTTTCACTTTCATTGCGATCAGGAAGCTTTTCTGATAAAGGACCAAAGCAATATATGGAGGATGAGTTCATAT GTGTTGATGTTCTTCGTGAATGTGTTGGTCCAGGATCAGACCTTCCTTCTCCAGCAGCATTTTATGGGGTATTTGATGGA CATGGTGGTGTTGATGCTGCATCATTTACCAGAAAGAACATCCTTAAGTTTATAATTGAAGATCCCCAGTTCCCATCTGG CATTAAGAAAGCAATTAAGAATGCATTTGTGAAGGTTGACAATGCATTTAGAGATGCTAGTGCCCTTGACAGCTCTTCAG GCACCACCGCCCTAGCAGCCCTTGTTCTAGGAAGTGTCATGCTGATTGCCAATGCAGGGGATTCTCGTGCTGTATTGGGC AAAAGGGGCAGAGCCGTTGAACTTTCCAAAGACCACAAACCAAATTGCACATCAGAAAGACTGAGAATTGAGAAACTGGG TGGTGTGATCTATGATGGATACCTCAATGGCCAACTATCAGTGGCTCGCGCTCTCGGAGACTGGCATATCAAAGGCGCTA AAGGCTCGAAAAGCCCCTTGAGCTCCGAGCCTGAGCTCGAGGAGATTATCCTGACAGAAGAAGATGAGTTTTTGATAATG GGGTGTGATGGATTATGGGATGTCATGAGCAGCCAGTGTGCTGTTACAATGGTGAGGAGGGAGCTCATGCAGCACAATGA TCCCAACAAGTGTGCAAAAGTGCTCGTTGCTGAGGCCCTCCAACGCAACACGTGCGACAATCTCACAGTTGTGGTGGTTT GTTTCTCTAAAGATCCACCTCCTAAAATTGAGATTCCTAGATCACATAGGAGGAGGAGCATTTCTGCTGAAGGCCTTGAT CTTCTCAAGGGTGTCTTGAATGGTAGGTGA
Protein sequence (LotjaGi2g1v0354000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCGRKIYKLQQEPNIITVGLKPSTEEKSEFSLSLRSGSFSDKGPKQYMEDEFICVDVLRECVGPGSDLPSPAAFYGVFDG HGGVDAASFTRKNILKFIIEDPQFPSGIKKAIKNAFVKVDNAFRDASALDSSSGTTALAALVLGSVMLIANAGDSRAVLG KRGRAVELSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARALGDWHIKGAKGSKSPLSSEPELEEIILTEEDEFLIM GCDGLWDVMSSQCAVTMVRRELMQHNDPNKCAKVLVAEALQRNTCDNLTVVVVCFSKDPPPKIEIPRSHRRRSISAEGLD LLKGVLNGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 18 | 300 | 283 | 3.4E-84 | ||
| SMART | 25 | 293 | 269 | 3.7E-93 | ||
| PANTHER | 26 | 311 | 286 | 7.4E-151 | – | |
| PANTHER | 26 | 311 | 286 | 7.4E-151 | ||
| SUPERFAMILY | 28 | 296 | 269 | 1.44E-74 | ||
| CDD | 35 | 295 | 261 | 1.76331E-86 | ||
| ProSiteProfiles | 35 | 295 | 261 | 49.067 | ||
| Pfam | 42 | 287 | 246 | 5.3E-72 | ||
| ProSitePatterns | 74 | 82 | 9 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Protein serine/threonine phosphatase activity | Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. | ||
| Biological process | Protein dephosphorylation | The process of removing one or more phosphoric residues from a protein. | ||
| Molecular function | Cation binding | Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge. |
Expression pattern of LotjaGi2g1v0354000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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