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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0355000 |
Transcript ID | LotjaGi2g1v0355000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | High mobility group protein; TAIR: AT1G20693.2 high mobility group B2; Swiss-Prot: sp|O49596|HMGB2_ARATH High mobility group B protein 2; TrEMBL-Plants: tr|A0A1J7FXB8|A0A1J7FXB8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0355000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:83124239..83127014) extracted from Lotus japonicus Gifu genome v1.2.
CATATTTTGAGTTTGCCTTTCTTATCCCTCCCTCGCGCCTCTTACCATAAACGCACCCCACGTCTCGCTATTAATCTTCT CCCTCACGAAACCGAAATCTCACACACTCGCTCTCAAACCCTCTCTCTCTCTCTCTCTAACAAACCCTCGCTCTCTCTCT CTCTCTAACAAACCCTCGCTCTCTCTCTCTCCTCGCCGCACCGTCACCATGCCGAAGGCCGCTTCCGACTCCAAACCCGC TGACAGCCGGTGAGTCTCTAACACTTTCCACCGTGTTCTCCTCGTTTTCACCATTCGTTTCGTGGTTTCGTGCTTTGAAT CGCTTTATCCGTTGATTTTCTGCTTGTTTGTTATGTAATTCGTTAGATCTGTATCGTGTTGCTTGTTTTCTGTGATTTGT GACTTGTTTTCCGTTGTTTGAATTTTGATTTTGTTAGGTTGAAGCGCAAGGGCGCTGGAACTGGAAGGAAGCAGACGAAG AAGGCTGCGAAGGATCCTAACAAGCCTAAGAGGCCTTCCAGCGCTTTCTTTGTTTACATGTACGGTTTGGTGCTTAGATT CATTCGATTCGGTTTTCAATTTGTGATTTCTGATTTGCGTTTCGCGTTTCTCGTTCTGTTTCTGTCAAATTCGTGTTTCG GTCAAATTCAGTCTCTGATTTGTGATTTGTGGTGTGGTTTTTGCAGGTCTGAGTTCAGAACGCAGTTCAAGAAGGATAAT CCTAACAACAAGTCCGTTGCTGCTGTGAGTGATTTGATTTGATCTAGTTTATCGTCGTTTTCTGTTCCAATTTTTGAATG TGTGTTTGAATTCGTGTCCGTTTTTTACTGTGAAATTCAATTAGGTTGGCAAAGCTGCTGGTAGCAAGTGGAAATCCATG ACTGATGCTGTGAGTGATTTGCTCTGATAATTTTGTTGTTCTTATGCACAGAATGATTTAACCCTAATTTGTGATTAATT GTGATTTTTTTGAATTTTTCAGGAGAAGGCTCCCTACGTTGCTAGGGCAGAGAAGGCGAAGGAGGAGTATGAGAAGACTC TCCGTGCCTACAACAATGGATTGGTAATTACTTCCCCCTGTGGTGTTTTGGTGTTTGACTTTTGCTTTGATTGGTTGACT TTGCCATTATTGATTGAACCTGTTTGTGATGTAATAACAGGCTGAGAGCAAAGGCTCTGCTGAGGAAGAAGGTTCTGACA AGTCAAAGTCCGAAGTCAATGATGATGATGAGGACGATGTAATTTTCTTCTTGTGGCTTTGTACTCTGTAATTTACTTTG CTATGTGATTTGCTATGTTGTTCATGATATTAATTGATTTGTGGTTTGCTTTTTGATTCCACAGGATGAAGATGACGAGT GAAATCATGTAGCAAATGAAGGAGCTTAAGGGTGTAACTGGATGCAATAATTTTCATAGGCTCGCTTCAATTTTAGCAGC AGACATTTTCAATTTCAATAGATAAATAGTTTTTATGAATGCGTTTAATCTAGGGAACAATCGTAATTTTAGGCCTGTAG TTTGAAGGCAGTATCTATCATCAATACAGGACTCGTTTTGCTATGTTGCGTTTGAATGGTCAATTGTCCTTTTCTTTATC CGTTGATTATCTTATTTCTCCGCGAATTCAACTCGTTTTGTTGACATCAAGTACCTTTTTCAACGCAATCAAAGTCCAAT TCGTATCCAAATCCAATTAAATAATTAATTTTGGTATTGTGGGTTGTGTCATGTGTGCTTGTTTCATTCTGAAAAGCAAT TTTCATTTGTCTTATTGTCTTTCGGATTGAATCTTGTCACAATTTATGATTGGAAACATCGCGATTTTACAATCTGGGTT TTAGATGCTATGGTGGATTATGCTCTTAAAAAGCATTTAGCTTATCTTGTTAATCCAATTTATGATTTAGTATCAGCAAT TTCAATAGTTTTCTCAAGATTACGCTCAGTAGGTGCTTTTTGAAAAACATTTCAATTAATCTACTTACCCTACTATGCTC TAAGATCCGATTTGATAATGGGCTAAATACCTTGAGGTTTTGAATGGGTATGTGGTCTTGTGTTGTGAAAATAATTCATG TTTTCAGATTTCTTGGGAACAGTAGTTTCTGTTTTCCTCAAACTTGAATTTTACAAGCTTTTCGTTTTTATCTTCACTTT GTAGTATCAAAATGAATATAATTTCAAGGGCGGTTGATCTGTTAGGGTGTTGATATGTGTTGTTGCAGTGCTTGAGTTTC AATACACAGAAAATCGTGTAATGTGTAAAATTATTAGTAAACAAATGAGCTTAAATTTAATAAGCAAAGGCTAAAGGAGA TAATACTGTATGTTTTGCTTTCTTCTTTATAGGCTGTGGCAGACATGGTGCTCAGTTAATATTCTGTTTCACGTCTTGTG TTTATCAATTTTTTTGTCTGATCCTTTTAATAAAAAAACGAAAGAGAAAAACACTGGATTTTAGATAGAATAGACTCAAT AGAGAAGTAATAAACTATTTACTAACACAATTGGATGAACTTATTTTTTCTTGAAATTGTTTTTGGCACTTAAAAGCTAC TTACAAAAATTTCTTCTATAAGTTTATTTTGTCTTTAGAATAAATTTACAAGGGTTTTGGTATCAAACAGGACCCACTCA ATATGCTTACACTAGGTCTATACGAAATATACAAAACCCCAGCTGGCTATAGGATAATGTTTAGCCTTTAAATATATTTC GTAGTTATTTCCATCTTCCAGAGTATATTCTATTTGTTGGATAAGTGCCATAGGCG
CDS sequence (LotjaGi2g1v0355000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGAAGGCCGCTTCCGACTCCAAACCCGCTGACAGCCGGTTGAAGCGCAAGGGCGCTGGAACTGGAAGGAAGCAGAC GAAGAAGGCTGCGAAGGATCCTAACAAGCCTAAGAGGCCTTCCAGCGCTTTCTTTGTTTACATGTCTGAGTTCAGAACGC AGTTCAAGAAGGATAATCCTAACAACAAGTCCGTTGCTGCTGTTGGCAAAGCTGCTGGTAGCAAGTGGAAATCCATGACT GATGCTGAGAAGGCTCCCTACGTTGCTAGGGCAGAGAAGGCGAAGGAGGAGTATGAGAAGACTCTCCGTGCCTACAACAA TGGATTGGCTGAGAGCAAAGGCTCTGCTGAGGAAGAAGGTTCTGACAAGTCAAAGTCCGAAGTCAATGATGATGATGAGG ACGATGATGAAGATGACGAGTGA
Protein sequence (LotjaGi2g1v0355000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPKAASDSKPADSRLKRKGAGTGRKQTKKAAKDPNKPKRPSSAFFVYMSEFRTQFKKDNPNNKSVAAVGKAAGSKWKSMT DAEKAPYVARAEKAKEEYEKTLRAYNNGLAESKGSAEEEGSDKSKSEVNDDDEDDDEDDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 42 | 42 | - | – | |
PANTHER | 6 | 140 | 135 | 7.9E-54 | – | |
PANTHER | 6 | 140 | 135 | 7.9E-54 | – | |
Gene3D | 23 | 108 | 86 | 4.5E-28 | ||
SUPERFAMILY | 24 | 106 | 83 | 6.28E-26 | ||
SMART | 36 | 107 | 72 | 7.3E-26 | ||
Pfam | 37 | 106 | 70 | 4.1E-23 | ||
ProSiteProfiles | 37 | 106 | 70 | 19.942 | ||
CDD | 37 | 103 | 67 | 6.16834E-17 | – | |
Coils | 88 | 108 | 21 | - | – | |
MobiDBLite | 106 | 140 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0355000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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