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LotjaGi2g1v0356600.1

Overview

Field Value
Gene ID LotjaGi2g1v0356600
Transcript ID LotjaGi2g1v0356600.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Isocitrate dehydrogenase, putative; TAIR: AT4G35260.1 isocitrate dehydrogenase 1; Swiss-Prot: sp|Q8LFC0|IDH1_ARATH Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial; TrEMBL-Plants: tr|I1LI93|I1LI93_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0356600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:83300470..83304334) extracted from Lotus japonicus Gifu genome v1.2.

CGCAATTTACCTTTCCATGGCTTCACGAATCATATTCGCTTCATAACTCACAGCACAACAGCATCCAACCACAGACACTA AAGTCTCAAAACCCTAACACCGCCACCGCCACCGCAACCGCCACCGTCAATGGCGACGCGACGCTCCGCACCGCTCCTAA AAAACATATTCTCCCGACTCAACCCGACTCGCTCCGTCACCTACATGCCACGACCAGGAGACGGCACCCCGCGCGGCGTG ACCCTCATCCCTGGCGACGGAATAGGCCCACTGGTCACCGGCGCGGTGGAGCAGGTGATGGAGGCGATGCATGCGCCGGT GTACTTTGAGAAGTACGAAGTGCACGGCGACATGAAGGCGGTGCCCGCGGAGGTGATCGAGTCGATCAAGAAGAACAAGG TGTGCTTGAAGGGCGGCCTCGCCACTCCGATGGGCGGTGGTGTCAGCTCCCTCAATGTGCAGCTCAGGAGGGAGCTTGAC CTCTACGCCTCCCTTGTTAACTGCTTCAATGTCCCCGGGTTGCCCACGCGCCATGACAATGTCGACATCGTCGTTATCAG GGAGAATACTGAGGGCGAGTACGCTGGCCTTGAGCACGAGGTCGTTCCCGGCGTCGTCGAGAGTCTTAAGGTGTTCCTTT GAATCCTTTCCCTGTCTCTTTACCTTAGCTTGTTTTGTACTGATAGATAAGCGAATTTTACTTGATAAACAAGTGAATGA AAACATGATACCAGTAATTGAATCTAGGATTGCGAGAATTTGTGGAATTTATACTTTTGAGTTGCTTAGACAGTGGCTAG GTTTGAAGTTTGAATTGTTTGATGAGTAGGCTATGACTTGCTGGGTCCAGTAGTGAGTGATTTGTGAATTGTGAGTATTA AATTAGTTTATTTGCTCAACTCGAAAGAGGGACATAGAGTTGGATTGCAATTTGTGGGCGTTTGGCATGATCTGTGATTT TTCGGTTGAGTTACTTACTGATATTTAATTCACACTATGAAATGGAAAGAACTGATGTAGAGTTGCATGTGATTTGTTAG GTTGTGTATATTTTTGGTGATTTTGTTGCACTTAATGGATAGCTGATAACTCAGAAGATACTTAGGATGTGACCAATTTC GTGACATGTTTTAATAGATATTAGTTGGTATGGGGGCTTGGTCACTTAGTTGAAAAAATTCTAGGTGCCATGTTTAGCAG TGATGGTTTTCAGGAGGTATTTTACTAATATTAGAGAATACCTTTTGGTCATTGGACAGGTTTATTCTGACACATATTTA TAAGAAACAGGGGTGAAACTTAGCTCCTTAGATATTGAACACATACGTCATTCACCAGTAGCATTTACATATTATGTATA TATTGATATTCATGGCAGTTGTCAATTATCTATGTAAAGGCTTATTAAAATGCATATGAAGAGAAAAATAGTAGTGCCGT GATCAAATTGATTGAGAATGACTATGAATTTTGTTTGCTTTTTTTTTTTTGTTTTTTGTCATTTATACGGGTTGGGTTAC CATGCACATGCTGCTCCCTGTGGGCTGACCATTGTTTGGCTGATAAGAGAAATAGGGGAAAGAAATAAGAGAAAAAAATT GAAGAGAAGAGAAAATGAAGATAAGTAGAAAGGATGTATTGTTTTTATGGATAGAGGTGATAAATAAAGAAGTGGGGTAA TTCCGCTGGGTTTGTTTGGATGAGTGGAAGAGTGATTAGAAACAAATTAAGACTTGAGAGAATAAGTTAACACACTTTTA CCCTTATGTAGGTTGGGTAACTTGGCATTACTAATCAGTTAGAAACATTCAGTAATATGTGGAAAACACACACTTTTACC CCAGTCTGTACAAGAATTTTGCCGATGAAGGGGAGATCTTTTTTGGTGAGTGATGAGTTGCACATTTTTTTTTCCATTTT CATATCATTCAACACCTAAATGAGTAAGATGCTATGTTTCAATCCAACGTCTCTTCTTTCCATTTCTTTCTTCACAAGGC CCACCAATACTAGAAGTTGTTCATCGTGAACATGATCCAGATATATCCTGTTTTACGAAATGCTATACTTCAAATGGATG AGTTGTTTTCCCTTATAATCTCTTGATTTTTTTGTGAAATCTTTAAATGTTTACATATCATGAAGTTAAGTATGGGTTTT ATGTTTGCACCTCATACTGATATTTTGCTAGGTAATAACAAAGTTCTGTTCAGAGCGCATCGCTAAATATGCTTTCGAGT TTGCTTATCTAAATAACAGAAAGAAGGTGACTGCTGTGCACAAAGCAAACATAATGAAACTTGCAGATGGTTTATTCCTG GAATCCTGTCGAGAGGTTGCCACTAAGTATCCTGGAATCAAGTATAATGAAATTATTGTGGATAACTGTTGCATGCAGCT TGTTTCAAAGCCTGAGCAGTTTGACGTCATGGTATGTATATTTACAATTTGATCCTGATCCCATTTATTTATCCACTCTT GGTTAATTTGTACGTGGAGTAAATGTAATTATGGCGGACCAGCACTTGTTTAGCACAAAGTTTTTTCCTTTTCTTCTTAC CTTAGTGCTATCAATTTTCTGGGGAGATAAGCAGCTCTTTGATTAAATTGTGACCTGTTTGTGTTTTGACTGTTTTCATA TTTTCTTTTCATTTCTTTGGGGAATTAGTGCTATGGCTCCTTTTGTTAACTCATGCAAGACAAATCAGTCTAGAAATGAG TAGCAACAGAAAAGAATAAAAAACGAATTCATAATAACTGACTCCCTTGACGTAGTGGAGTATGTAGATCAGTAGATGTG CTGTATGGATACAGAGTAGACATATAAGTTCGCTTTTTTTTTTCTGTCAGTTCAACTGTGCAAGGGAGAACATTGCAGGT GGTTGTTGGTTGACCTGATGGTTCTCTTGCAATTAACTGGTCTTTGTTTCATTCAAATTGCTTTCATTTTCAATCCAATA AAAGGGTTTTGAAGCTCATGAGCACTATTCCACTTGCTAGGTAACCCCCAATCTCTATGGAAATCTGGTGGCAAATACAG CGGCTGGTATTGCTGGAGGCACTGGTGTCATGCCAGGAGGTATGCTTTTAATAAACAATGCATTGAATGAAACTCGAGAG GTCTCATCTAATTTTGTTGCCATTTTTCTTATTAAATAGTGTCTTACTTCCATACTGACATTGTTATTAGATGTGTAAGG GTGGCATTTTCATACATTGGCTTTGCAGGTAATGTTGGGGCAGACCATGCAGTGTTTGAACAAGGTGCTTCAGCAGGAAA TGTTGGTAATCAATCGTTAGTGGAACAAAAGAAGGCGAATCCGGTCGCACTCCTTCTTTCGTCAGCCATGATGCTTAGAC ATCTCCAGTTTCCTGCATTTGCTGACCGATTAGAAAGTGCTGTAGAACAAGTCATTCTAGAGGGCAAGCACCGGACGAAG GACCTTGGAGGGACAAGCACCACGCAAGAGGTTGTTGATGCAGTCATACATGCCTTAGATTGATTCTTTTATTTGCCAGC CATGTTCATTCCTTGCTAGCTAGCTAAGTTTATCCACTATGTTTTTGCACCCTTTTAAGGTGAAATTGCTTTGGACAAAA AAAAAGGTGTAATTGCCAAGTTTTGGTCCCCAATAAATAATGTTTATACACTCAGAAAATTGTGATGAAAAAATATTCAG AGATGTAGGTGGTTACTGTTTTGAGTGTTTTCTGTTTGTTGTTCCTTTTTAAACACTAGTTTTATATATGCTCTTAATTT TTTAAAAAGTTAATTCGTCACAAAAATGATTGTATAGTAATATATTAACAGAGTATGTTAAATGTAGTCTATCTACCATA CTCAACTGCACATGAGAAATATTCC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0356600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGACGCGACGCTCCGCACCGCTCCTAAAAAACATATTCTCCCGACTCAACCCGACTCGCTCCGTCACCTACATGCC ACGACCAGGAGACGGCACCCCGCGCGGCGTGACCCTCATCCCTGGCGACGGAATAGGCCCACTGGTCACCGGCGCGGTGG AGCAGGTGATGGAGGCGATGCATGCGCCGGTGTACTTTGAGAAGTACGAAGTGCACGGCGACATGAAGGCGGTGCCCGCG GAGGTGATCGAGTCGATCAAGAAGAACAAGGTGTGCTTGAAGGGCGGCCTCGCCACTCCGATGGGCGGTGGTGTCAGCTC CCTCAATGTGCAGCTCAGGAGGGAGCTTGACCTCTACGCCTCCCTTGTTAACTGCTTCAATGTCCCCGGGTTGCCCACGC GCCATGACAATGTCGACATCGTCGTTATCAGGGAGAATACTGAGGGCGAGTACGCTGGCCTTGAGCACGAGGTCGTTCCC GGCGTCGTCGAGAGTCTTAAGGTAATAACAAAGTTCTGTTCAGAGCGCATCGCTAAATATGCTTTCGAGTTTGCTTATCT AAATAACAGAAAGAAGGTGACTGCTGTGCACAAAGCAAACATAATGAAACTTGCAGATGGTTTATTCCTGGAATCCTGTC GAGAGGTTGCCACTAAGTATCCTGGAATCAAGTATAATGAAATTATTGTGGATAACTGTTGCATGCAGCTTGTTTCAAAG CCTGAGCAGTTTGACGTCATGGTAACCCCCAATCTCTATGGAAATCTGGTGGCAAATACAGCGGCTGGTATTGCTGGAGG CACTGGTGTCATGCCAGGAGGTAATGTTGGGGCAGACCATGCAGTGTTTGAACAAGGTGCTTCAGCAGGAAATGTTGGTA ATCAATCGTTAGTGGAACAAAAGAAGGCGAATCCGGTCGCACTCCTTCTTTCGTCAGCCATGATGCTTAGACATCTCCAG TTTCCTGCATTTGCTGACCGATTAGAAAGTGCTGTAGAACAAGTCATTCTAGAGGGCAAGCACCGGACGAAGGACCTTGG AGGGACAAGCACCACGCAAGAGGTTGTTGATGCAGTCATACATGCCTTAGATTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0356600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATRRSAPLLKNIFSRLNPTRSVTYMPRPGDGTPRGVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFEKYEVHGDMKAVPA EVIESIKKNKVCLKGGLATPMGGGVSSLNVQLRRELDLYASLVNCFNVPGLPTRHDNVDIVVIRENTEGEYAGLEHEVVP GVVESLKVITKFCSERIAKYAFEFAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSK PEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNQSLVEQKKANPVALLLSSAMMLRHLQ FPAFADRLESAVEQVILEGKHRTKDLGGTSTTQEVVDAVIHALD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11835
14 364 351 7.3E-239 –
PANTHER
PTHR11835:SF65
14 364 351 7.3E-239 –
Gene3D
G3DSA:3.40.718.10
24 364 341 7.1E-126 –
TIGRFAM
TIGR00175
33 362 330 4.8E-156
IPR004434
SUPERFAMILY
SSF53659
36 363 328 2.3E-109 –
SMART
SM01329
36 359 324 1.4E-142
IPR024084
Pfam
PF00180
37 359 323 5.8E-79
IPR024084

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004449
Molecular function Isocitrate dehydrogenase (NAD+) activity Catalysis of the reaction: isocitrate + NAD+ = 2-oxoglutarate + CO2 + NADH + H+.
Subterm of
GO:0006099
Biological process Tricarboxylic acid cycle A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.
Subterm of
Part of
GO:0016616
Molecular function Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0356600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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