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LotjaGi2g1v0356600.2

Overview

Field Value
Gene ID LotjaGi2g1v0356600
Transcript ID LotjaGi2g1v0356600.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description 3-isopropylmalate dehydrogenase; TAIR: AT4G35260.1 isocitrate dehydrogenase 1; Swiss-Prot: sp|Q8LFC0|IDH1_ARATH Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial; TrEMBL-Plants: tr|A0A0R0HDU0|A0A0R0HDU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0356600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:83300505..83304146) extracted from Lotus japonicus Gifu genome v1.2.

TCGCTTCATAACTCACAGCACAACAGCATCCAACCACAGACACTAAAGTCTCAAAACCCTAACACCGCCACCGCCACCGC AACCGCCACCGTCAATGGCGACGCGACGCTCCGCACCGCTCCTAAAAAACATATTCTCCCGACTCAACCCGACTCGCTCC GTCACCTACATGCCACGACCAGGAGACGGCACCCCGCGCGGCGTGACCCTCATCCCTGGCGACGGAATAGGCCCACTGGT CACCGGCGCGGTGGAGCAGGTGATGGAGGCGATGCATGCGCCGGTGTACTTTGAGAAGTACGAAGTGCACGGCGACATGA AGGCGGTGCCCGCGGAGGTGATCGAGTCGATCAAGAAGAACAAGGTGTGCTTGAAGGGCGGCCTCGCCACTCCGATGGGC GGTGGTGTCAGCTCCCTCAATGTGCAGCTCAGGAGGGAGCTTGACCTCTACGCCTCCCTTGTTAACTGCTTCAATGTCCC CGGGTTGCCCACGCGCCATGACAATGTCGACATCGTCGTTATCAGGGAGAATACTGAGGGCGAGTACGCTGGCCTTGAGC ACGAGGTCGTTCCCGGCGTCGTCGAGAGTCTTAAGGTGTTCCTTTGAATCCTTTCCCTGTCTCTTTACCTTAGCTTGTTT TGTACTGATAGATAAGCGAATTTTACTTGATAAACAAGTGAATGAAAACATGATACCAGTAATTGAATCTAGGATTGCGA GAATTTGTGGAATTTATACTTTTGAGTTGCTTAGACAGTGGCTAGGTTTGAAGTTTGAATTGTTTGATGAGTAGGCTATG ACTTGCTGGGTCCAGTAGTGAGTGATTTGTGAATTGTGAGTATTAAATTAGTTTATTTGCTCAACTCGAAAGAGGGACAT AGAGTTGGATTGCAATTTGTGGGCGTTTGGCATGATCTGTGATTTTTCGGTTGAGTTACTTACTGATATTTAATTCACAC TATGAAATGGAAAGAACTGATGTAGAGTTGCATGTGATTTGTTAGGTTGTGTATATTTTTGGTGATTTTGTTGCACTTAA TGGATAGCTGATAACTCAGAAGATACTTAGGATGTGACCAATTTCGTGACATGTTTTAATAGATATTAGTTGGTATGGGG GCTTGGTCACTTAGTTGAAAAAATTCTAGGTGCCATGTTTAGCAGTGATGGTTTTCAGGAGGTATTTTACTAATATTAGA GAATACCTTTTGGTCATTGGACAGGTTTATTCTGACACATATTTATAAGAAACAGGGGTGAAACTTAGCTCCTTAGATAT TGAACACATACGTCATTCACCAGTAGCATTTACATATTATGTATATATTGATATTCATGGCAGTTGTCAATTATCTATGT AAAGGCTTATTAAAATGCATATGAAGAGAAAAATAGTAGTGCCGTGATCAAATTGATTGAGAATGACTATGAATTTTGTT TGCTTTTTTTTTTTTGTTTTTTGTCATTTATACGGGTTGGGTTACCATGCACATGCTGCTCCCTGTGGGCTGACCATTGT TTGGCTGATAAGAGAAATAGGGGAAAGAAATAAGAGAAAAAAATTGAAGAGAAGAGAAAATGAAGATAAGTAGAAAGGAT GTATTGTTTTTATGGATAGAGGTGATAAATAAAGAAGTGGGGTAATTCCGCTGGGTTTGTTTGGATGAGTGGAAGAGTGA TTAGAAACAAATTAAGACTTGAGAGAATAAGTTAACACACTTTTACCCTTATGTAGGTTGGGTAACTTGGCATTACTAAT CAGTTAGAAACATTCAGTAATATGTGGAAAACACACACTTTTACCCCAGTCTGTACAAGAATTTTGCCGATGAAGGGGAG ATCTTTTTTGGTGAGTGATGAGTTGCACATTTTTTTTTCCATTTTCATATCATTCAACACCTAAATGAGTAAGATGCTAT GTTTCAATCCAACGTCTCTTCTTTCCATTTCTTTCTTCACAAGGCCCACCAATACTAGAAGTTGTTCATCGTGAACATGA TCCAGATATATCCTGTTTTACGAAATGCTATACTTCAAATGGATGAGTTGTTTTCCCTTATAATCTCTTGATTTTTTTGT GAAATCTTTAAATGTTTACATATCATGAAGTTAAGTATGGGTTTTATGTTTGCACCTCATACTGATATTTTGCTAGGTAA TAACAAAGTTCTGTTCAGAGCGCATCGCTAAATATGCTTTCGAGTTTGCTTATCTAAATAACAGAAAGAAGGTGACTGCT GTGCACAAAGCAAACATAATGAAACTTGCAGATGGTTTATTCCTGGAATCCTGTCGAGAGGTTGCCACTAAGTATCCTGG AATCAAGTATAATGAAATTATTGTGGATAACTGTTGCATGCAGCTTGTTTCAAAGCCTGAGCAGTTTGACGTCATGGTAT GTATATTTACAATTTGATCCTGATCCCATTTATTTATCCACTCTTGGTTAATTTGTACGTGGAGTAAATGTAATTATGGC GGACCAGCACTTGTTTAGCACAAAGTTTTTTCCTTTTCTTCTTACCTTAGTGCTATCAATTTTCTGGGGAGATAAGCAGC TCTTTGATTAAATTGTGACCTGTTTGTGTTTTGACTGTTTTCATATTTTCTTTTCATTTCTTTGGGGAATTAGTGCTATG GCTCCTTTTGTTAACTCATGCAAGACAAATCAGTCTAGAAATGAGTAGCAACAGAAAAGAATAAAAAACGAATTCATAAT AACTGACTCCCTTGACGTAGTGGAGTATGTAGATCAGTAGATGTGCTGTATGGATACAGAGTAGACATATAAGTTCGCTT TTTTTTTTCTGTCAGTTCAACTGTGCAAGGGAGAACATTGCAGGTGGTTGTTGGTTGACCTGATGGTTCTCTTGCAATTA ACTGGTCTTTGTTTCATTCAAATTGCTTTCATTTTCAATCCAATAAAAGGGTTTTGAAGCTCATGAGCACTATTCCACTT GCTAGGTAACCCCCAATCTCTATGGAAATCTGGTGGCAAATACAGCGGCTGGTATTGCTGGAGGCACTGGTGTCATGCCA GGAGGTATGCTTTTAATAAACAATGCATTGAATGAAACTCGAGAGGTCTCATCTAATTTTGTTGCCATTTTTCTTATTAA ATAGTGTCTTACTTCCATACTGACATTGTTATTAGATGTGTAAGGGTGGCATTTTCATACATTGGCTTTGCAGGTAATGT TGGGGCAGACCATGCAGTGTTTGAACAAGGTGCTTCAGCAGGAAATGTTGGTAATCAATCGTTAGTGGAACAAAAGAAGG CGAATCCGGTCGCACTCCTTCTTTCGTCAGCCATGATGCTTAGACATCTCCAGTTTCCTGCATTTGCTGACCGATTAGAA AGTGCTGTAGAACAAGTCATTCTAGAGGGCAAGCACCGGACGAAGGACCTTGGAGGGACAAGCACCACGCAAGAGGTTGT TGATGCAGTCATACATGCCTTAGATTGATTCTTTTATTTGCCAGCCATGTTCATTCCTTGCTAGCTAGCTAAGTTTATCC ACTATGTTTTTGCACCCTTTTAAGGTGAAATTGCTTTGGACAAAAAAAAAGGTGTAATTGCCAAGTTTTGGTCCCCAATA AATAATGTTTATACACTCAGAAAATTGTGATGAAAAAATATT
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0356600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGACGCGACGCTCCGCACCGCTCCTAAAAAACATATTCTCCCGACTCAACCCGACTCGCTCCGTCACCTACATGCC ACGACCAGGAGACGGCACCCCGCGCGGCGTGACCCTCATCCCTGGCGACGGAATAGGCCCACTGGTCACCGGCGCGGTGG AGCAGGTGATGGAGGCGATGCATGCGCCGGTGTACTTTGAGAAGTACGAAGTGCACGGCGACATGAAGGCGGTGCCCGCG GAGGTGATCGAGTCGATCAAGAAGAACAAGGTGTGCTTGAAGGGCGGCCTCGCCACTCCGATGGGCGGTGGTGTCAGCTC CCTCAATGTGCAGCTCAGGAGGGAGCTTGACCTCTACGCCTCCCTTGTTAACTGCTTCAATGTCCCCGGGTTGCCCACGC GCCATGACAATGTCGACATCGTCGTTATCAGGGAGAATACTGAGGGCGAGTACGCTGGCCTTGAGCACGAGGTCGTTCCC GGCGTCGTCGAGAGTCTTAAGTTCTGTTCAGAGCGCATCGCTAAATATGCTTTCGAGTTTGCTTATCTAAATAACAGAAA GAAGGTGACTGCTGTGCACAAAGCAAACATAATGAAACTTGCAGATGGTTTATTCCTGGAATCCTGTCGAGAGGTTGCCA CTAAGTATCCTGGAATCAAGTATAATGAAATTATTGTGGATAACTGTTGCATGCAGCTTGTTTCAAAGCCTGAGCAGTTT GACGTCATGGTAACCCCCAATCTCTATGGAAATCTGGTGGCAAATACAGCGGCTGGTATTGCTGGAGGCACTGGTGTCAT GCCAGGAGGTAATGTTGGGGCAGACCATGCAGTGTTTGAACAAGGTGCTTCAGCAGGAAATGTTGGTAATCAATCGTTAG TGGAACAAAAGAAGGCGAATCCGGTCGCACTCCTTCTTTCGTCAGCCATGATGCTTAGACATCTCCAGTTTCCTGCATTT GCTGACCGATTAGAAAGTGCTGTAGAACAAGTCATTCTAGAGGGCAAGCACCGGACGAAGGACCTTGGAGGGACAAGCAC CACGCAAGAGGTTGTTGATGCAGTCATACATGCCTTAGATTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0356600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATRRSAPLLKNIFSRLNPTRSVTYMPRPGDGTPRGVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFEKYEVHGDMKAVPA EVIESIKKNKVCLKGGLATPMGGGVSSLNVQLRRELDLYASLVNCFNVPGLPTRHDNVDIVVIRENTEGEYAGLEHEVVP GVVESLKFCSERIAKYAFEFAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQF DVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNQSLVEQKKANPVALLLSSAMMLRHLQFPAF ADRLESAVEQVILEGKHRTKDLGGTSTTQEVVDAVIHALD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11835
14 360 347 2.8E-233 –
PANTHER
PTHR11835:SF65
14 360 347 2.8E-233 –
Gene3D
G3DSA:3.40.718.10
24 360 337 5.3E-121 –
TIGRFAM
TIGR00175
33 358 326 1.3E-150
IPR004434
SUPERFAMILY
SSF53659
36 359 324 1.71E-105 –
SMART
SM01329
36 355 320 7.2E-135
IPR024084
Pfam
PF00180
37 355 319 1.3E-75
IPR024084

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004449
Molecular function Isocitrate dehydrogenase (NAD+) activity Catalysis of the reaction: isocitrate + NAD+ = 2-oxoglutarate + CO2 + NADH + H+.
Subterm of
GO:0006099
Biological process Tricarboxylic acid cycle A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.
Subterm of
Part of
GO:0016616
Molecular function Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0356600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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