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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0357200 |
| Transcript ID | LotjaGi2g1v0357200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | General transcription factor 3C polypeptide 5; TAIR: AT3G49410.1 Transcription factor IIIC, subunit 5; Swiss-Prot: sp|Q9Y5Q8|TF3C5_HUMAN General transcription factor 3C polypeptide 5; TrEMBL-Plants: tr|I1LI80|I1LI80_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0357200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:83330535..83337218) extracted from Lotus japonicus Gifu genome v1.2.
CAATAAGGAACCCTAGCAACTAGCAAGTAGCATCCAATTGTATCTTTCTTCTCCCAGTTTCTTCTTTTGTTCTTCCGTTT TTATTTTCTTGTTTCAGCATGTGGCTATTCTTCTAGCTCTTTCCCTTTTCTTTCTCTGTTTATTATTGTACCGGTTTGTG CCCCCTATCCGGGTACCAATTGAAGCACAGTTACTTACTGGCCCAACCGTTACAGCTCCGAATCACCGGCCGAGTCTAGC CGGTCCAGATCGAGTCGCTTGCATGACCGATCCAATACTCAACTCGAATCCCGGTTCAACCGGCAAGTTGAATCTCTCAT TCCTTTTCCTTCTTGTGCTTACTACTACTTACTTGGAATTACATGTTGTGCAAATTACATGTTTAAATAAACGATAAAAT TAGGGTTGACAGAGAGAAATCAGCTTGGAGGAGATTGCTAACTTGAATCTATTCTTTAATGGGAGTGATCAAGGATGGCA CAATCTCAGGGGTTCTACCTGACCCTGAGGGATTTCTGGTGCACTATCCTGCTTATCCATCTTCTGTGTCTCGTGCCGTC GACACCCTCGGTGGAATTCAAGCCATCCTCAAGGCTCGAAGTTCGCAATCAAACAAACTAGAGCTCCATTTCCGCCCTCA AGACCCTTATTCACATCCTGCGTTAGGGGAGCTTCGTCCCACCAACACATTGCTTCTCAAAATATCAAAGAGTAGAAAAT TTCCCTGTGATCATGGTTCCACAAGTACAAAGGACAATGCAACGCAAGAAAACCAACCTCATAAAGTTGACAATGATGAA AGTCTCTGTGCCGATATTGTTGCTCGTGTTCCAGAAGCTTATTTTTTTGATGGTTAGAAGCTCGAAATCGGGTTGGTTTT GGTCAAATACTTTATTCAACCTCCTAACCAAATTATCTGGTTGGCTTTTTTGATGTCATGAAGGAATGGCTGACTACCAA CATGTTGTTCCTGTTCATGCTGACATTGCCCGGAGGAAGAAGAGAAACTGGTCGGAACTAGAAGAACCGCTCTTTGGTGA ATATCTTGTTTCCATGTTTCTGTTACTTTGATTTCATGTTTGAAGAGTATTCAATGCCTGTTTTATGAGTCTGTGATTTC TGTTTTTGTTCTTTGATGATAGCTAAGGGTGGTCTCATGGATGTGGATCATGAGGATGTTATGATTATAGTGCCTCCAGT TTTTGCTCCAAAAGATATTCCTGAAAATTTGGTGTAAGTTTCTCTGACATTTCTTGTTTAGTGATTAAGAGAAAAGTCAA GGATGAGCAAGGATGATACTATATTGGATACAATCCCATAACTGTTTAGGACCATTTAAATATTTGTACATTCGAAGAGG ATGATGGTAGGGTACCATAACTTGGACAGTTGACCTTAACAATGAGGAAAAAAACTGGAGAGTCACTTAATGTGATACTA ATTGTATGTTATTTTTTGTTATCTATTATTATTATTATTATTTTCTTAGCTCATAGAGTTCCTTTCTAGCTCTTAGAGTG GCTTGTCTTTCAGTGGGGTTTTACTATTTCTGTCTTCTATATGTATGTATGTATGTATGTATGTATGTATGTTCTGTGCA ATTGTTTCTCTAGTTTGAGGTACTTGGATAGTGGGACATGCTATATTCTTAAAATTGAAGTATTTAAAAACTTCTTATGT TCTTATTCCTACTCTACTTTTTTTTCCCTCAGTTATGTTTCTATTCAGTCATCGGCTTCTACAGCTTTTTATTGTAACTT TTCCATTAGTTATTCTTGCAAATTTTGACTGGAAATTTCATCTTGCTTTACTTTATTGAAGTGTTTCAGTCTTTTCTTAT TTCAGCTTGAGACCACCAACCGTGTTGAGTTCAAAAAAGAAACAAGAGCATAAGAAACAAAAGCATATTTTACAACCACA TTTCAAGGTAATCTTAATTAAAAATTCTTCCTTTATAGCATTTAGGCATAAAATTTAATCCTTTTGGCAAAAAAGTAAAA TATACCATAACCTTTGGTGAGTAACCTGTTTGTTGACTGTACAACTTTGAACTTTCTTTCATCCTGCTGTTTCATTCATC ATAAACATGAAATATCTTTTTTCTGTGGTAGCAAAAGAAACTACATTAGTGAGAAAGAGGCAAGAACAACTAGAGGAGAA TCAAATATCCTCCAAAACCTTAAAAAACTAACTATAAAGAAACATTCGCAGTGGTTTGATTATACAAAGTCGAGAGATGA CAGAAGGGATAAAAAGCCTCTAAGAATGGAACAATCCTGACCCATATTTCCTCCGAGAAGTTTAATATTTGTGTTCAATT TCTTGTAGACAATATTTGCGTAAATTAGATGGCAAGCCGCCTTACTTTCTGCATGGTTTTTTTATGGCGATAAAAGTCTT TAGAAATGTGCTTTCCAGTTATTCGAAAGATCACATTTTGTTCGTACATATTTTTTTGGGTGGCATTAGACATATGCAAT ATTTTTAGCAAGAATATTTACTTGTTGCAATGTTGTATGCAGATGGACACAGAGATGGAACCAGTTCTTGCACTTGATTG TGACATTAAAGATATCCTTCTGTCGATTGGTAGAACCATCATAGTTAAAAATGATTGAAGTTGAAAAGTTTTGCATGGTT TTATTTGTTCATTGTTTTGCTTATGCTTTGTAAAATCCTTTTTACTTAAATTTACACTTTGACCTCGTAGTTTATATATT TTTTTCGTTACACTGGAAACAAAGCTGAAGCAAAAAAAAAAAAAAAACTAAGAAGCCTAGCTATCCCTTAGGAGATTTTT CAATATTATAATTAGCTATTCGATTAACTAGAGAATTTCCTTTTTAAAGTATTTTAATTACATGTGTACAAAATATATGT GCTCAAAATATCTGGTTTGGGTTTTACTTAGCTTTCATACAGATTCCTAAAAGAGTGAATTGGGAGGAGTACATACCACA AAGCTCAGATCAGTGGGAGCCGCAAATGGTCGTATCTAAAATGTTTGATGAGCGGCCTATATGGTCCAAAAATTCGCTCA CTGAACGCCTGCTTGATAAGGGCTTAAGCTTTTCACATGACATGCTCAGAAGGTGACATATGAAAATTCTGCTTATTTGC TTTTTATATTGTGACAATGAATTGCTACAGCTTTGATAATTATGCAGTGGCCTTACGTTCTCTCTTGCAGGCTTCTCTCT AGAATCTCTTACTACTTTTCCAGTGGACCATTTCTCAGGTTCTGGATCAAGAAAGGATATGATCCACGTAAAGATCCTGA TTCACGCATGTAAGACTCATTCCTGATTTCTAAATAATCTCATGAATTTTTATCATACATTTGACTCAAAACTATTTAGC TTCCATAATAAACAGATTTCTGATGCATTTTTCAGTTTCGTAATATTGTTGACTACTAAAATGCTGAGGTGTCATGTTAT CCTTTCATACATTTCAGTTGCACATGCTTCGCATGTATATCATAACAATATAGGAAGTAGGAAATAGCGTCTGTAATTAG TATTATAATTGCTGAGCATGAAGGTTTTTGGTTTAGCAGTTATCAGCGAATTGATTATCGAGTGCCAATCCCTTTGCGAA GTTACTGCGATACTTACTCAGCCAACAAGTAAGTCCTTTTCTTTGATTTATCTCAGGCTTTACCAAACGAAACTGTAATT TAGGAGAAACTCCATCCATGTGTATGCATAAGATAGAGGAACCAGAATATCAATGTAAAATCATGTAAATAGACATTAGA CAGGCGGAGTTGATATAACATATCTGTTTATTGTCACTATATCATAACTATCTTGTCATTGTGTTATTTCCTCATGTGGA AAGGCTATTATTTCATGCAGATTGAAGCATAGATGGGAGGATATATGTGCCTTTCGAGCTTTCCCTTACAAGTTCCAGAC ATCTTTACAGTTGTTTGAGCTTGTTGATGATTATATTCAATCAGAAATAAATAAGCCTCCATCACAGGCAACTTGCACCG TAAGATTTTCATGCGGATCTTTGTTTAATATAATAATATATCACATTTATGACATAAATTTGCTTTACTTTGCTTTTGAC ATGTTTCATATTTTTCTTATCTCGTGGTATGAAAGGTGATGCATAATTGCTCATTTTTCTTTTTGCTCTAACAAACAATA ACCAACTAAGTGGATAATTTCTTGTATATAATCTTGTTCTGTCGTGAAATTGTGTATATCAAGCTGCTGTAATTTATGCC TCAAGCAATAAAATATCAGAAAATTTGCTTCCTTTTATATTTTGTGCATGAAGCTATTGTAACAAATTCCATTACCTACC TGAGTTGCATCTTTCATGCTAACTTTACAGTTTGCAACTGGGTGGTTCTCACAAAATACAATGAATTGTATTAGACAACG TCTAATGGTGAGGTACCTATCAATATTTCCCAAGCCTGGTGCAGAGAATTTACTTAGAGCTGCCACTTCTAGGTTTGAAA AACTGAAGCGGGAATGCATTAGGAATGCCATGAAGCTTGATGGAGAGGAATTCCAGCAAGCCAATCCAGGTTATGTCAAC TTTTTTTTTTTTCAGTTTTTCACAATTTTTTTACGAAGTTCATGGTTCTTTATATTGATATAGCTTTAGCATATAATAAC TGAAGGAACAAATTATTGCCACATCCAAGACCATGATTTAAGAAGAATTAAGAAACAGTCAACTTCCAACCTCTCTTGTT AAGAGCTGAAATTTTAAATTTTTGCTGATTTCTTAGACCTGTAATACACTTATTGTTCAAAAAATCCCTACATAATACTT ATCTTGAGTACTATATGATCTAACGTGGTAAGGGAGAACTCTATATAGATTCCTCCGAGAAAGTTTGTTGTCTGTTTTCT CTGAAAAAGTTTTCTAGTCTTTCCTGGAAAGTGTTATTTGTAGCAGAATGGTAATGGTATTACAAAAAAAAATTAGTCAA TTTGTTATATCTAATATGATTATGAACCAAAATGGAAGAACTTTTTGTTACAGAACCAGAATTTAGTATCTTTTGCTGCT AAAATTTACTATTCCTGGTATGATAGTTGAGCAATAATTGAATATTTTTATTGTATCTGGAACACAGGTTTGGAAGAGAA TGAGGAACCTGACAATGTTGAAGATGATGAAGAGGGTAATGATAGTGAGGAGGAATGGGAAGAAGAACTTGATCTGGTAA TTATTATCTATGTTTTCATATTTTATGCTTTTCTCCGTAGATTGTATTGGCAGTGGCTTTTAAATCGGATAGTTTTTAAT CTATTCTGTTGACTCGTGTAGGCTGGAGATACTGAAGTGCCTCTGCCGTCTGATTCCTGTATCCTTTTCTATTTGTATTC TAAATTTACTATTAAGTTCAAAGATTGAACCCTCTTTATTGCATGGCACAAGTTTATATGATGAGGATGGAATAAAGATT CTGAATACCGTAGTTCAGGGTAACTCGCTACTGCGCTTGAGTAAACATGGTAATGATATGATAACAATCATTCTGAATTC CATTAGTTAAGTCTCCCCTAAGTATATTCTTGAATGACAAAGAGTTGTTGTTAGTCTTTCCTTGTGTTCCGGTACCACAC CCTTTGGCGCTTGCACTTTATGCAGTTCCAAACTGTACCCAGTGAAGTTGGAAGCGGTATAAAGATTTGATAGTGGTCTT GGCAGGATTAATGGAAAATTGTTGTTTTTGTAGTTTAGAGAATGCTTTTTGTGGCCTCTTAGGTGCAACTCTCGTAAGGT TGCTCCAATGTGACTTTGCGGTCACAGGTTTGAGCTGTGAAATCAGTCTTGCAAAAATACAAGGCAAGGCTAGCTACATT AGATCCACAAAGTGGGTTTGGCCCTTCTCTGGACCTCGCGCATAGCGAGAGCTTTATAGCACCAGGTTTTCCCTTTTTTA GGTGTAGCTCTCGTGGTTAGACTAGTGGTGTTTTGAGTAGAAGTTATAGGTTTAAAGAGTTACTAGTTATATCTTCATCG AAAAATAAAATGTTTTGTTTTATTACCAAGATGTTCCTTTATACATTACTGCGAGACTGAAATAGGAGATCCTTTCAATA ATTGTCTTCTCTATATGCTCAATGCGAAGACAAGACTCAATGCAGCAATCAAATTGGGATGAATCTTGATTATTCTTCTA TCATTTTGATGGCCAAGTCGATTGCTAGGTTTTCTCAAGTAACATTCGAAAGATCTTCTGGCCCTTTTGAATTCCTTTAT AATTTTCAGACTTCAACATGGAGAATATTTCAAGGTCCCATTTACAGGAGCTTTTTGTTAGCTTTCCATCAAATGAAGTT GGTATTGACAAAGCTCACGAAGATTGCAGTGATGAAGAATATCCCATATACGAGGAAGATAGTGATGACAACTACTCTGA TGAATGATTGCTGGCATTCAGGCTTTTCAGACACAGATTTCTTCTTGAAGTGTTTCTGGAAATTTTGCTCCTCAGTTTTG AGGAGCTTCAGTGATTTTATAAACTTAGATAATTATTTTTTTAAATCTGAAATGTATATAAAGTTAAAATTGCATCTAAA TATTATTATGGATAAGTAAATTAGGTTATACAATTATTAAATTTTTAAGGAGTTCCATTTTTAGATTTCATAAAACTATT ATAAGTTCTAATCACCTATGGCTTCATGGGTGATAGAAATGAAC
CDS sequence (LotjaGi2g1v0357200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGTGATCAAGGATGGCACAATCTCAGGGGTTCTACCTGACCCTGAGGGATTTCTGGTGCACTATCCTGCTTATCC ATCTTCTGTGTCTCGTGCCGTCGACACCCTCGGTGGAATTCAAGCCATCCTCAAGGCTCGAAGTTCGCAATCAAACAAAC TAGAGCTCCATTTCCGCCCTCAAGACCCTTATTCACATCCTGCGTTAGGGGAGCTTCGTCCCACCAACACATTGCTTCTC AAAATATCAAAGAGTAGAAAATTTCCCTGTGATCATGGTTCCACAAGTACAAAGGACAATGCAACGCAAGAAAACCAACC TCATAAAGTTGACAATGATGAAAGTCTCTGTGCCGATATTGTTGCTCGTGTTCCAGAAGCTTATTTTTTTGATGGAATGG CTGACTACCAACATGTTGTTCCTGTTCATGCTGACATTGCCCGGAGGAAGAAGAGAAACTGGTCGGAACTAGAAGAACCG CTCTTTGCTAAGGGTGGTCTCATGGATGTGGATCATGAGGATGTTATGATTATAGTGCCTCCAGTTTTTGCTCCAAAAGA TATTCCTGAAAATTTGGTCTTGAGACCACCAACCGTGTTGAGTTCAAAAAAGAAACAAGAGCATAAGAAACAAAAGCATA TTTTACAACCACATTTCAAGATGGACACAGAGATGGAACCAGTTCTTGCACTTGATTGTGACATTAAAGAGATTCCTAAA AGAGTGAATTGGGAGGAGTACATACCACAAAGCTCAGATCAGTGGGAGCCGCAAATGGTCGTATCTAAAATGTTTGATGA GCGGCCTATATGGTCCAAAAATTCGCTCACTGAACGCCTGCTTGATAAGGGCTTAAGCTTTTCACATGACATGCTCAGAA GGCTTCTCTCTAGAATCTCTTACTACTTTTCCAGTGGACCATTTCTCAGGTTCTGGATCAAGAAAGGATATGATCCACGT AAAGATCCTGATTCACGCATTTATCAGCGAATTGATTATCGAGTGCCAATCCCTTTGCGAAGTTACTGCGATACTTACTC AGCCAACAAATTGAAGCATAGATGGGAGGATATATGTGCCTTTCGAGCTTTCCCTTACAAGTTCCAGACATCTTTACAGT TGTTTGAGCTTGTTGATGATTATATTCAATCAGAAATAAATAAGCCTCCATCACAGGCAACTTGCACCTTTGCAACTGGG TGGTTCTCACAAAATACAATGAATTGTATTAGACAACGTCTAATGGTGAGGTACCTATCAATATTTCCCAAGCCTGGTGC AGAGAATTTACTTAGAGCTGCCACTTCTAGGTTTGAAAAACTGAAGCGGGAATGCATTAGGAATGCCATGAAGCTTGATG GAGAGGAATTCCAGCAAGCCAATCCAGGTTTGGAAGAGAATGAGGAACCTGACAATGTTGAAGATGATGAAGAGGGTAAT GATAGTGAGGAGGAATGGGAAGAAGAACTTGATCTGGCTGGAGATACTGAAGTGCCTCTGCCGTCTGATTCCTACTTCAA CATGGAGAATATTTCAAGGTCCCATTTACAGGAGCTTTTTGTTAGCTTTCCATCAAATGAAGTTGGTATTGACAAAGCTC ACGAAGATTGCAGTGATGAAGAATATCCCATATACGAGGAAGATAGTGATGACAACTACTCTGATGAATGA
Protein sequence (LotjaGi2g1v0357200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVIKDGTISGVLPDPEGFLVHYPAYPSSVSRAVDTLGGIQAILKARSSQSNKLELHFRPQDPYSHPALGELRPTNTLLL KISKSRKFPCDHGSTSTKDNATQENQPHKVDNDESLCADIVARVPEAYFFDGMADYQHVVPVHADIARRKKRNWSELEEP LFAKGGLMDVDHEDVMIIVPPVFAPKDIPENLVLRPPTVLSSKKKQEHKKQKHILQPHFKMDTEMEPVLALDCDIKEIPK RVNWEEYIPQSSDQWEPQMVVSKMFDERPIWSKNSLTERLLDKGLSFSHDMLRRLLSRISYYFSSGPFLRFWIKKGYDPR KDPDSRIYQRIDYRVPIPLRSYCDTYSANKLKHRWEDICAFRAFPYKFQTSLQLFELVDDYIQSEINKPPSQATCTFATG WFSQNTMNCIRQRLMVRYLSIFPKPGAENLLRAATSRFEKLKRECIRNAMKLDGEEFQQANPGLEENEEPDNVEDDEEGN DSEEEWEEELDLAGDTEVPLPSDSYFNMENISRSHLQELFVSFPSNEVGIDKAHEDCSDEEYPIYEEDSDDNYSDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 552 | 552 | 1.7E-179 | – | |
| PANTHER | 1 | 552 | 552 | 1.7E-179 | ||
| Gene3D | 8 | 140 | 133 | 1.6E-27 | ||
| Pfam | 20 | 138 | 119 | 7.0E-28 | ||
| MobiDBLite | 90 | 110 | 21 | - | – | |
| Pfam | 177 | 334 | 158 | 6.0E-33 | ||
| MobiDBLite | 456 | 504 | 49 | - | – | |
| MobiDBLite | 467 | 494 | 28 | - | – | |
| MobiDBLite | 531 | 556 | 26 | - | – | |
| MobiDBLite | 540 | 556 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Transcription factor TFIIIC complex | A heterotrimeric transcription factor complex that is involved in regulating transcription from RNA polymerase III (Pol III) promoters. TFIIIC contains three conserved subunits that associate with the proximal Pol III promoter element, and additional subunits that associate with sequence elements downstream of the promoter and are more diverged among species. It also functions as a boundary element to partition genome content into distinct domains outside Pol III promoter regions. | ||
| Biological process | Transcription initiation from RNA polymerase III promoter | Any process involved in the assembly of the RNA polymerase III preinitiation complex (PIC) at an RNA polymerase III promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. |
Expression pattern of LotjaGi2g1v0357200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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