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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0358700 |
| Transcript ID | LotjaGi2g1v0358700.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transporter-related family protein; TAIR: AT2G28315.1 Nucleotide/sugar transporter family protein; Swiss-Prot: sp|Q8RXL8|Y1689_ARATH Uncharacterized membrane protein At1g06890; TrEMBL-Plants: tr|A0A072ULS8|A0A072ULS8_MEDTR Nucleotide/sugar transporter family protein; Found in the gene: LotjaGi2g1v0358700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:85595257..85597425) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAGAGATGTCAAAATTCCAATTGGGTGTGATTGGTGCACTATTTCTCTCTGTGGCTTCCTCTGTCTCCATTGTGAT CTGCAACAAAGCCTTGATGAGCAATCTTGGCTTCCCATTTGGTGATTATCATTTTTTCTCACCTCTTCAAAAGTTATATA CTCTTCATGATAAAAAGTCAAATCATGAACTTGTGTTTTGTTCCATTTGGACCAGCCACAACCCTTACAAGTTGGCATTT GATGGTTACATTTTGCACCCTTCATGCGGCTCAACGCTTAAATCTGTTTGAGGCCAAGCCTGTTGATATGAAGACAGTCA TGCTTTTTGGCATTCTAAATGGTGTCTCCATTGGATTTCTCAACTTGAGCCTTGGCTTCAATTCCATTGGATTCTACCAG GTTTACTTCAATATTTTACTTTGTGTAATGTGGAAATCCTTCTATAATTTATTCTTAAGGCAGAATCAATTCTGAGGAGA AACTTTTGTGAGTAGCTTCTGGGTTTCAGAATTGATTCTGAGAAAAAATAAAATTATTCAACATGCTACAAGACATTGAC GTTTAAGATAATGTAAACCAAAAGCAATTTTCAATTACAAGATACATTTATAATGTGTTGTCTGTTAAGCTATTCTTCAA ATTGCCTCAGTTTTATTCCTCATTTTGCAGATGACAAAACTTGCAATCATACCATTTACAGTAATTCTAGAAACTATTTT CCTCAAGAAGCAGTTCAGGTAATAAGTTAATGAAAGGACTCAATACTAGTGATATTGAAATCAAACAGAACAGTGGTATA TTAACTGATTGTGAACTCTTTTTCTACAATGTGCAGCCAGAAAATCAAGTTCTCTCTCTTCCTATTACTTATTGGAGTTG GCATTGCCTCCATCACAGACCTTCAGCTAAATTTTCTTGGAACCATTCTTTCCCTTCTAGCTATCATCACCACATGTGTT GGTCAAATTGTATCCTTTACTCCTTAGTCTTCTGTTGCTAACATGTAATTATTATGAATGATGACTTATTCTGTGTTTGT TTGGATCAGCATTGTCAGAGTTGATTTTGGTAAATTTGATTATGGCAAAAGTGAATTGAAGTGAGTTGAAAGTGAAGTGG TTTATGTTTGAATAAATTTATGAGAAAAGTCAACAGTGATTTTTTGTAGGGTAATGTTGTGAAATCTCAATTGATTATGT CCACCAGAAAAGCTACTATCTCTAGCTTCTCATCCAAATTGATTTTGGAACTGAAATAAATTCTTCAAGACAGTTTTCAA ACATCTAATGAGAATTGGTTCTAAGGTTCCAATGGGAAAACCAACCAAACACACACTTAGGCTCACTTAACTTAAAGCTG AGGAGGTTGTTGATTCTTAACTTTATGTACAATTCAGCTTACCAACACAATACAGAAGAAGCTCAATGTCTCTTCCACAC AGCTCCTCTACCAGTCTGCTCCATTCCAAGCAGCAATTCTTTTTGTTTCAGGCCCTTTTGTGGATAAGATGCTCACCAAG CAAAATGTCTTTGCATACAAGTATACTCCTTTAGTCTTGGTTAGTAATATCAAATACCAAACCTCATTAAGTTATATATT AGATACATACATTAGTGCTAAAATTACAATATAGAATTTGATTGATGTTATCAACTGTTCTTTTCTTTCCTTTTCAGACA TTCATCATCCTGTCATGTGTGATAGCTGTTTCTGTGAACTTCAGCACCTTCCTAGTTATAGGCAAAACATCTCCTGTAAC ATATCAAGTGTTAGGCCACCTCAAGACTTGCCTTGTTCTAGCATTTGGATACACATTGCTCCATGACCCCTTTAACGTGA GGAACATTATTGGAATAGCGGTTGCCGTTTTCGGAATGGGGTTGTATTCTTATTTCTGCACCCAGGAGAACAAAAAGAAA CAATCAGTGGATCCCCCATTGGCATCCCAGGTACTTCGTCATCATTTTTCTCCTTTTGCCTCTCAAATTTTCTTTGCTGT TTCAGCTCCTGAATGTATTATGTATTGAGATTTTTATGAGAAATTGGTTATTTAATTTATTTTTGATTACTTACAGGTTA AAGACCCACTTTTGGGTGGGAAAAACATGGATAATGGACAAAAGGAGAGTCACGAGCCTAAGAAATCAAGCAAGGACTCT CTTGTTTAA
CDS sequence (LotjaGi2g1v0358700.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGAGATGTCAAAATTCCAATTGGGTGTGATTGGTGCACTATTTCTCTCTGTGGCTTCCTCTGTCTCCATTGTGAT CTGCAACAAAGCCTTGATGAGCAATCTTGGCTTCCCATTTGCCACAACCCTTACAAGTTGGCATTTGATGGTTACATTTT GCACCCTTCATGCGGCTCAACGCTTAAATCTGTTTGAGGCCAAGCCTGTTGATATGAAGACAGTCATGCTTTTTGGCATT CTAAATGGTGTCTCCATTGGATTTCTCAACTTGAGCCTTGGCTTCAATTCCATTGGATTCTACCAGATGACAAAACTTGC AATCATACCATTTACAGTAATTCTAGAAACTATTTTCCTCAAGAAGCAGTTCAGCCAGAAAATCAAGTTCTCTCTCTTCC TATTACTTATTGGAGTTGGCATTGCCTCCATCACAGACCTTCAGCTAAATTTTCTTGGAACCATTCTTTCCCTTCTAGCT ATCATCACCACATGTGTTGGTCAAATTAAGAAGCTCAATGTCTCTTCCACACAGCTCCTCTACCAGTCTGCTCCATTCCA AGCAGCAATTCTTTTTGTTTCAGGCCCTTTTGTGGATAAGATGCTCACCAAGCAAAATGTCTTTGCATACAAGTATACTC CTTTAGTCTTGACATTCATCATCCTGTCATGTGTGATAGCTGTTTCTGTGAACTTCAGCACCTTCCTAGTTATAGGCAAA ACATCTCCTGTAACATATCAAGTGTTAGGCCACCTCAAGACTTGCCTTGTTCTAGCATTTGGATACACATTGCTCCATGA CCCCTTTAACGTGAGGAACATTATTGGAATAGCGGTTGCCGTTTTCGGAATGGGGTTGTATTCTTATTTCTGCACCCAGG AGAACAAAAAGAAACAATCAGTGGATCCCCCATTGGCATCCCAGCTCCTGAATGTTAAAGACCCACTTTTGGGTGGGAAA AACATGGATAATGGACAAAAGGAGAGTCACGAGCCTAAGAAATCAAGCAAGGACTCTCTTGTTTAA
Protein sequence (LotjaGi2g1v0358700.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEMSKFQLGVIGALFLSVASSVSIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHAAQRLNLFEAKPVDMKTVMLFGI LNGVSIGFLNLSLGFNSIGFYQMTKLAIIPFTVILETIFLKKQFSQKIKFSLFLLLIGVGIASITDLQLNFLGTILSLLA IITTCVGQIKKLNVSSTQLLYQSAPFQAAILFVSGPFVDKMLTKQNVFAYKYTPLVLTFIILSCVIAVSVNFSTFLVIGK TSPVTYQVLGHLKTCLVLAFGYTLLHDPFNVRNIIGIAVAVFGMGLYSYFCTQENKKKQSVDPPLASQLLNVKDPLLGGK NMDNGQKESHEPKKSSKDSLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 319 | 319 | 3.6E-188 | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| PANTHER | 1 | 319 | 319 | 3.6E-188 | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 7 | 17 | 11 | - | – | |
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Pfam | 21 | 288 | 268 | 6.8E-19 | ||
| Phobius | 23 | 37 | 15 | - | – | |
| TMHMM | 37 | 59 | 23 | - | – | |
| Phobius | 38 | 59 | 22 | - | – | |
| Phobius | 60 | 74 | 15 | - | – | |
| TMHMM | 74 | 96 | 23 | - | – | |
| Phobius | 75 | 93 | 19 | - | – | |
| Phobius | 94 | 98 | 5 | - | – | |
| Phobius | 99 | 120 | 22 | - | – | |
| Phobius | 121 | 126 | 6 | - | – | |
| Phobius | 127 | 145 | 19 | - | – | |
| TMHMM | 128 | 145 | 18 | - | – | |
| Phobius | 146 | 150 | 5 | - | – | |
| TMHMM | 149 | 166 | 18 | - | – | |
| Phobius | 151 | 167 | 17 | - | – | |
| Phobius | 168 | 178 | 11 | - | – | |
| Phobius | 179 | 197 | 19 | - | – | |
| TMHMM | 179 | 198 | 20 | - | – | |
| Phobius | 198 | 216 | 19 | - | – | |
| SUPERFAMILY | 212 | 288 | 77 | 9.68E-5 | – | |
| TMHMM | 213 | 235 | 23 | - | – | |
| Phobius | 217 | 238 | 22 | - | – | |
| Phobius | 239 | 244 | 6 | - | – | |
| Phobius | 245 | 265 | 21 | - | – | |
| TMHMM | 248 | 265 | 18 | - | – | |
| Phobius | 266 | 270 | 5 | - | – | |
| TMHMM | 269 | 291 | 23 | - | – | |
| Phobius | 271 | 290 | 20 | - | – | |
| Phobius | 291 | 341 | 51 | - | – | |
| MobiDBLite | 314 | 341 | 28 | - | – | |
| MobiDBLite | 324 | 341 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0358700.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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