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LotjaGi2g1v0358900.1

Overview

Field Value
Gene ID LotjaGi2g1v0358900
Transcript ID LotjaGi2g1v0358900.1
Lotus japonicus genome version Gifu v1.2
Description Auxin response factor; TAIR: AT2G28350.1 auxin response factor 10; Swiss-Prot: sp|Q653H7|ARFR_ORYSJ Auxin response factor 18; TrEMBL-Plants: tr|A0A0B2PDU0|A0A0B2PDU0_GLYSO Auxin response factor; Found in the gene: LotjaGi2g1v0358900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:85611904..85619286) extracted from Lotus japonicus Gifu genome v1.2.

CAGCAATTACCAAACAGATAGAGAAAAGTAAGACATTATTTTAATATGCTCGATTATGATTTTTCAGTACAGTAAACTAC AATTTGGGACGGCAAAACATGACAAGTGCTAAATTACATGGCCTTTGAGTTAAATATAAGTGCAAGATTAAGATTGGTTC AAGCTAAGACAATCCAACTCTTTTGTTATATATCCCAACATTCTTTTGTTGTGTTTTCTAGCTAAAAACTTTTCTATATT ATTTCTTTCCACCATCTCTTCATCATTAATATTTCATCTACGTCTCTTAATTGTCTTTATGTTGATTATTAATTAATCAT TTCATATAGGTGCTTGCTGTGGTACCTTACTTTAGGTGAATGTATGGTACCCTAAATGAGTTAGCATAGTAATAAAGGCT CATGTATCACATGAGTTATCAATTTTATTTTCTCAATAATGTACCTTAAGATTAATGACGTCGATTAGATAGATGTTAAG TTTCTCTCTTGTTGATATCATGTCGCTCAGAATCAACGTTAAGGTCGAGATTCACTACAACCTCTGCAAGGTCGTGGTGG ACGTCAACAAAGGTCGTCAAATGACAGTTGAGTTGCCCAATGAATATTGAGAGTACTATTGAGACTAGAATTATAACATT GAGAATTATAAATTTAATTACAACATGTCATTAGTCTACTAAATCACCTAATGTGGGTATCACACCCAAAAAAAATTACG GGTACCACAAAATTCACCTTTCATATATGGTAGTAATAATCTCACTCATTTGTTATCAATTAATAACTATAATTAATTGA AGTATATTTGTATTAGCACACTCACCAACTAGAGAAAGCTAATTAATTTCAGGCATCTTGGCTTGTTTGCTATATATCTA TGTCCTTTGTAATATATAAGTGTCGTGTTGTTCACCAATTGGTCATACAAATTAAAAAAAAAAAAACAAAGAAAGTCACA ACAAAACCACATCTCAGTAACATCAAGTAATATGTTATCTCAATATTTTTCCAGTTGAGGCAAGTGAAACAAAACCTAAA ACTCTTTGAAACTTTGCTTCCTCTAGTTATATAATTCTATAAGCTACGGTTAACTGTATATCTTGTTTTGTTGTCAATTT TGTGAGTGTTGGATTAATTTTATATACACAATATAAATTTATGATTATGACATAACTCTGTCTTTTAGTATAGAAAGTTT AGAGCTCATTTTGATGTCTCATAGTGTTATAGTTCGTTTTACTTTCGTCATAAAAAGGTAAGTGAGAAGCCAGAAGCAGG CGGCACACATTTTGTATTTTTCTTTCATTTTCAAAAAAAAAAACTTTGGTTGTGTATTATATATGAAAGTTCTCAACATA TTTTTACTTCATAGTTGATGTTTTAGTCGTTAAAAATGTGATTTTTTTTTGTTACAAAAAATAATATGTGATTTTAAAGT TGAATACAATATTAATGTTATTTTAATTAATTTGTTTTAAAACCAGAAATTGACTTATGCTTGTTTACAAATTAAATATA AAAATTACCTTTCACTTTAAAAATTCACTAGAAATATATAATCCATTATTTCAAAAGCTACTAAAAATAGTTTAAAGGAA TATTTCTGTTTTTTTAGTTCTGTTTCTGTTTTTTTTTTATCAAAAGCATCCACAAACAATACATAAGTGATTATTTTTTA AAAAATAAATAATTATTTTATGAAATAAGCAGAGAAAAACAAGTTATTTCCTTTCACATCTTCTAGCCTAACCTACTTAG AATTGTATGTCTAATAATTTCTCACATATTATTCCATAAGTATATGTACATGTGTTGTTTCACATATATAACCCTATATA TATTGTTTACAAATTATATATACTTGTATGCTTTATTTCTATTATACTCAACGTTGATTTACATTAAATTTAAAGTAGTA ACATCTTATTTCTTTTGATCCACATTGAGTTTGCATTTGAAATATTGAGATGTTCCATATAGTATGAATACAATTGAACA AGCATATATAATATTCTCCTCTTGTAAAAAAAAAACCAAGCATACAATCAATACTATAAGACAAACTAGTTCTATTAAGA TATCCATTTACGTTCAAAAAAAGATATCCATTTAAAAGAGATAAGATAAACAAATTTTAAAATTTAGAAAATAATACTTA GTTAAACTCAATACAAAACAATCCTTAATTTTTTGATGAAAGTATATGTTTATATATTTGTTTTACTAGCTTCCTTCGAA GGACAGGATCATACACAACCGATCCAAAAATATCGGACCCCCACTATGCTGAGGGACCCCTACGAGTCTACGACCATTAT TGGCGTTTTTTTTTTCTGAAAGTGGCAGAGTATTAAGTGAAAATCTCACATGTTCATGTTTTTACTTTTTAGTAGTGTAT TTTTGTGGTGCCTATTTTTGTATGGGAAAAGTTAGAACATGAGGCCCGTACTAAAAAAATGAAAAATAATTATCTTCACA TTTGAAATTCAATTTAGGAAGAAAAAAAAAGAAATAATTAGTATAATAAATGATGTAATATCTTTAAAAAAGAGTGATGT AATAGAAAATTAATATAAAAGATAAAAAGAGAAAGTAAGTGAAATTATAATATAATAAAAAATGGAGTGTGCATGTAATA AAACTCTAAATAAAGTGAAAACATTATGAAAGATTAAGGCGAAACATATTGGACTAATTTAAAGAGAAACACATAATTTT TTTGGTCAACCAAGGAAAGAAAATAGTTATGCATTAGTCATAAGCTTTTTAGAGGCTAATCATAACATTTCGTCTGCCCA TGGCACATGCCAACCACTCATAGTTTGATTCGTCTCGAACCATCCATACTAAAAACTGTCATCTTGTAACATCTTGATTT GATGAACATCCTCAGTGTAGTCATACGAGTCTTTTCAACGCGTTTTATTCTTAATAATGATTTCCCTAACAAAACTTCTC AAATAATCACTCATCTCATCATATTCCTCTCAACTAGTACACATTATTATTCAAACTCTACCTCACTTTTCCTCAGCATC CTTCACCTTTTTCACAGTTAAACCAAGTCAAAACTCACATACTTCCTGACATAATTGCATGACAGAACGTTAATTACTAC TATCTTTATCACATCACATGATCACAATTATAACCCAAAACTAAACTCACACTTTCATTTTAAAATTATATAAAATCTTT GCTGGCTGATGAAGACTTGATTTGGTCATTTGTTTTCCTCATAGGTTCCGGAGAGTGTCTGTCTTGTGTTGGACACAGAA AGAGAAAGAAACAGAGATAGATACATACATGATTGTTCCTTCCTTTATCTTTCCTTTGAGATCTCAGAGAGAAACCAAAA CATATAACAAAACAAAAACCAGCTCACAAAGGTGAATCAAAGTGTTTGTTTACGTGATCAAGCTTGTTACCATGATGTGA TGATTCACCAACAAACACTGTTCACTTCATCACTGTCCTAATTTCTTCTTCTTCTTCTTCTCATCTTGTCAACGGTGCAT GTGCAAGGTAGGAACGTGAATCTTCCTAGTTTCTGGAAACAGGGTGTGTCAAAGTTTGTGTTAGCACATTTTTCTGTGTG TTGTTGCTATGAAGGAAGGTGAGAAGAGCTTGGATCCGCAACTATGGCACGCGTGTGCAGGTGGAATGGTTCAAATGCCT CAGGTGAACTCCAGAGTTTTCTACTTTCCACAAGGGCATGCGGAACATGCTCACACCAACGTTGATCTGAGAGGTTCATT GCCACCGTTCATCCTCTGCAACGTTGCAGCAGTGAAATTCATGGCTGACCCAGAAACCGATGAGGTTTTCGCCAAGATGA GGCTCGTTCCTCTGAGGAATTCAGAGCTTGGTTTGGGAGAAGAAGGAGGTGAAGTGTTGGAAAATTCAGAGAAGCCTGCG TCGTTTGCTAAGACTTTGACCCAATCGGATGCTAACAATGGTGGGGGGTTTTCTGTTCCGAGGTACTGTGCGGAGACAAT TTTTCCCAGGCTGGATTATGCGGCGGAACCGCCGGTTCAGACGGTGGTGGCGAAGGATGTTCACGGCGAGCTTTGGAAGT TTAGGCATATATATAGAGGCACGCCGCGTAGGCACTTGCTGACCACAGGGTGGAGTACTTTTGTGAACCAGAAGAAACTG GTTGCAGGGGATTCTGTGGTGTTTTTGAGGGCTGAGAATGGGGAATTGTATGTTGGGATTCGTAGAGCAAAGAAGGGAAT TGGTGGTGGTGGTGGTGGTGGTTCTGAGGTTTCATCTGGGTGGAGCTCAGCTTCAGGATCAGGGAATTGTGGGATTGGAC CTTATGGGGCATTCTCTTTTTTCTTGAGAGAAGAGAACAAGACATTGAGGAATGGTTGTGTTGGTGGTGGTGGTGATTTG AGTGGGAGGGCAAGAGTGAGACCTGAAGCTGTTATTGAAGCTGTGACTCTAGCTGCTAGCAACCAACCATTTGAGGTTGT TTATTATCCAAGAGCTAGCACTCCTGAGTTTTGTATTAAGGCTTCGGCTGTGAAGGCGGCGATGAGGGTTCAATGGTGCT CTGGGATGAGGTTCAAGATGCCCTTTGAAACTGAGGACTCTTCCAGGATTAGCTGGTTCATGGGAACCATTGCTTCTGTT CAGGTTGTTGATCCTGTTCGCTGGCCTAATTCCCCATGGCGGCTTCTTCAGGTACTTTCTGTCGCCTTTAGACATCTTGC TTCAAATATGCTTGTCGTTGATAAGGGACTAAAATTCATGCTTCTTAGGATATTGTTGAGAACTACCACATTGACTATGA CTATAGATAAGGATAAATAATTCCTTATATAAGGTAGAATTGGTTCTGGAAATACCGAAATACATTATGACAACCTCAAA CACTCCATAAGAAAAAATGTTAGTTTTCCTCCCAGCAGCCTCATAACATTTTTTCTTATGGGATGTTTGGGGTTGTTATA TTAATGTGCTCCAATTTGACACTCGGTTTGCCACAATTTGACATTCTGTTTCATGGTGATTTCTGAAGAATTGGTTCTGG GAATATATATAAATTTCTTAAACTGAGTTAGTGTAATAACAAATCTGTGTTTCTTTTATTTCCATTATTCCCACGTAGTT GGTACCCCTGAATCTTATGCTTATGAGGCTGAAATTAATACTAGTGTTGATCGTGGAGATGTTTATTTGGTTTTGAATAC TTGATTGCATTCACATCCTAGTTCAAAACAGATCAGTTTGGTAGATAGTTTGTCATGTAATCTTGATTGATCTGGCTGAT ATCGCTACAGGTTAATTGGGATGAGCCAGATTTACTACAAAATGTGAAGCGTGTTAGCCCGTGGTTGGTTGAATTGGTAT CGAACATGCCAGCCATCCATTTCACACCCTTCTCTCCACCGAGAAAGAAGCTGCGGTTTCCGCAGCACCCCGACTTCCCC CTTGATGTTCGTTTTCCGACACCAACGTTTTCAGGCAACCAGCTCGGGCCAAACGTGCCCTTGATCTGTTTATCTGATAA TGCTCCTGCAAGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTCTATCAGATATCCACCTTAGCAATAAACTAC AGTTGGGGTTGTTTCCAACTAACATCCAGCTTCATAGTGGGATTTCAAATGGCAACATGACCAACCATGATGAGAGCAAG GAAAGCTTATCATGCTTGCTGACCATGGGAAAATCTATTAAAAGTTTGGAGAAATCTGTTGATGTTAAGAAACACCAATT TTTGCTTTTCGGTCAACCGATACTCACTGAGCAACAAATCTCTAATAGCTGCTCTAGAGAAGTGTTGTCTCATAATAATT CAGGAAAAAATTCACTAGCTGTGAATGAGGACAAAGAGAAGTGCTTTTTTGATTCACCAGGAAAAGCTTCTAGTGCTGAG TTTTCTTGGCAACTTGGCTTGGATACTGGTCATTGCAAGGTTTTCTTGGATTCAGAAGATGTAGGAAGAAGCCTAGACTT ATCATGTCTTGGTTCTTATGAAGAGCTGTACATGCGACTTGCCAATTTGTTTGGCTTAGAAAGATCTGAGATGTTGAACC ATGTCCTCTACCGCGATGCAACTGGTGCTGTTAAGCAAACTGGAGAAGAACCTTTCAGGTATCTATTGCTTTTGTTTTTA GTTTTTACCTTGAATCATTATATTTTCACATTAGGCCCTAAATTTGGCAGCATTGGCTTGATTTCTAGGTAACACACTAA CACCTTTCATATGCATATTTCTGTATAGTTCTGCATTTATTTCTCTGTGATGTTATTGCAGTGATTTCATGAAGACAGCA AAAAGATTGACAATTTTGACTGACTCAGGCAGCAAAAGTATTAGGTGAGACAGAAATTGAGCTCAATTCTTGTAACTCAT TTACCTTTATCTATCTAAATGACTAGATATTTAATAGCATGTTAGGATCAACTTCAATTTCCTCATAACCAATTTTGATA CCAGAAGCTACTCCCAGAGACTTCTTCCTAGAATTGATTTAGGCCTGAGAATCAATTCTGGAAGGATTTTCAAACAAGAC TTATGGGATAAGGATCATACTTTAGAACTAATGACCAAGTTGTACAGGGAAGTAAGGATTTTTTTAGTGAAATCCTTAAT TGAGAAGTTCATGGAAATACAATGAAATATCTATCAAAGTAAAACCAGTCCCACTTGTGCATAGGATACCACATTTTGTG TCTTGGAATTCTCTCCCAAAACTATTTTGTGTAACCTTTCTTCAGAATCCGTTTTTCAGGGCCTGGATTACAGGAACTCG GAATGGTGAACATGGATTGGATGCATCAAATCAAACAGGTCCTCTAAGCATATTTGCTTAGCATGGTGTATCATCCGAGA GATATTGTTGAGATTTCAGAAGTTGGCAAGTTTCATCTCCATTTACATCTTGAAAAACTGAAGATGAACTGAATCTTTTT AAAGTTTATTGTGTACCCAAATATTTATCAATGTTGGCGTTGTTGTGTTATTCAATTGTCCAAATAATGATGCTTGTGTC ATGGTCAACTACAATTGTAACATTAACCAAGATATGGACCCCATTTGTTGTTGATTGGCTTTTGTCCATTGTGCTCTTAC TAGCTGTCTGCGTGTCTCCACGTCACTAGTTTTCTAAAAAGTGACAAAAAACATAATGTATGTGTGTCAACGATATAATT TGTGATAATTAATGTCTGCCATATTTAGGGCTTGGGAATGTTACTTTAATTACTGTTCAACACTTCAACTAAACTGTTTG TCATGACAGGTTTTGCAACCTTTTTCCTCCATTTGTTTCCATCGCAACTACTCCCTTCCCTCCGTTCCTGATCTTTTGTT GTTTAAGGTTATGCACATTGTTT 

CDS sequence (LotjaGi2g1v0358900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGGAAGGTGAGAAGAGCTTGGATCCGCAACTATGGCACGCGTGTGCAGGTGGAATGGTTCAAATGCCTCAGGTGAA CTCCAGAGTTTTCTACTTTCCACAAGGGCATGCGGAACATGCTCACACCAACGTTGATCTGAGAGGTTCATTGCCACCGT TCATCCTCTGCAACGTTGCAGCAGTGAAATTCATGGCTGACCCAGAAACCGATGAGGTTTTCGCCAAGATGAGGCTCGTT CCTCTGAGGAATTCAGAGCTTGGTTTGGGAGAAGAAGGAGGTGAAGTGTTGGAAAATTCAGAGAAGCCTGCGTCGTTTGC TAAGACTTTGACCCAATCGGATGCTAACAATGGTGGGGGGTTTTCTGTTCCGAGGTACTGTGCGGAGACAATTTTTCCCA GGCTGGATTATGCGGCGGAACCGCCGGTTCAGACGGTGGTGGCGAAGGATGTTCACGGCGAGCTTTGGAAGTTTAGGCAT ATATATAGAGGCACGCCGCGTAGGCACTTGCTGACCACAGGGTGGAGTACTTTTGTGAACCAGAAGAAACTGGTTGCAGG GGATTCTGTGGTGTTTTTGAGGGCTGAGAATGGGGAATTGTATGTTGGGATTCGTAGAGCAAAGAAGGGAATTGGTGGTG GTGGTGGTGGTGGTTCTGAGGTTTCATCTGGGTGGAGCTCAGCTTCAGGATCAGGGAATTGTGGGATTGGACCTTATGGG GCATTCTCTTTTTTCTTGAGAGAAGAGAACAAGACATTGAGGAATGGTTGTGTTGGTGGTGGTGGTGATTTGAGTGGGAG GGCAAGAGTGAGACCTGAAGCTGTTATTGAAGCTGTGACTCTAGCTGCTAGCAACCAACCATTTGAGGTTGTTTATTATC CAAGAGCTAGCACTCCTGAGTTTTGTATTAAGGCTTCGGCTGTGAAGGCGGCGATGAGGGTTCAATGGTGCTCTGGGATG AGGTTCAAGATGCCCTTTGAAACTGAGGACTCTTCCAGGATTAGCTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTGT TGATCCTGTTCGCTGGCCTAATTCCCCATGGCGGCTTCTTCAGGTTAATTGGGATGAGCCAGATTTACTACAAAATGTGA AGCGTGTTAGCCCGTGGTTGGTTGAATTGGTATCGAACATGCCAGCCATCCATTTCACACCCTTCTCTCCACCGAGAAAG AAGCTGCGGTTTCCGCAGCACCCCGACTTCCCCCTTGATGTTCGTTTTCCGACACCAACGTTTTCAGGCAACCAGCTCGG GCCAAACGTGCCCTTGATCTGTTTATCTGATAATGCTCCTGCAAGCATACAGGGAGCCAGGCATGCTCAAATTGGAATAT CTCTATCAGATATCCACCTTAGCAATAAACTACAGTTGGGGTTGTTTCCAACTAACATCCAGCTTCATAGTGGGATTTCA AATGGCAACATGACCAACCATGATGAGAGCAAGGAAAGCTTATCATGCTTGCTGACCATGGGAAAATCTATTAAAAGTTT GGAGAAATCTGTTGATGTTAAGAAACACCAATTTTTGCTTTTCGGTCAACCGATACTCACTGAGCAACAAATCTCTAATA GCTGCTCTAGAGAAGTGTTGTCTCATAATAATTCAGGAAAAAATTCACTAGCTGTGAATGAGGACAAAGAGAAGTGCTTT TTTGATTCACCAGGAAAAGCTTCTAGTGCTGAGTTTTCTTGGCAACTTGGCTTGGATACTGGTCATTGCAAGGTTTTCTT GGATTCAGAAGATGTAGGAAGAAGCCTAGACTTATCATGTCTTGGTTCTTATGAAGAGCTGTACATGCGACTTGCCAATT TGTTTGGCTTAGAAAGATCTGAGATGTTGAACCATGTCCTCTACCGCGATGCAACTGGTGCTGTTAAGCAAACTGGAGAA GAACCTTTCAGTGATTTCATGAAGACAGCAAAAAGATTGACAATTTTGACTGACTCAGGCAGCAAAAGTATTAGGGCCTG GATTACAGGAACTCGGAATGGTGAACATGGATTGGATGCATCAAATCAAACAGGTCCTCTAAGCATATTTGCTTAG 

Protein sequence (LotjaGi2g1v0358900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKEGEKSLDPQLWHACAGGMVQMPQVNSRVFYFPQGHAEHAHTNVDLRGSLPPFILCNVAAVKFMADPETDEVFAKMRLV PLRNSELGLGEEGGEVLENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAAEPPVQTVVAKDVHGELWKFRH IYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFLRAENGELYVGIRRAKKGIGGGGGGGSEVSSGWSSASGSGNCGIGPYG AFSFFLREENKTLRNGCVGGGGDLSGRARVRPEAVIEAVTLAASNQPFEVVYYPRASTPEFCIKASAVKAAMRVQWCSGM RFKMPFETEDSSRISWFMGTIASVQVVDPVRWPNSPWRLLQVNWDEPDLLQNVKRVSPWLVELVSNMPAIHFTPFSPPRK KLRFPQHPDFPLDVRFPTPTFSGNQLGPNVPLICLSDNAPASIQGARHAQIGISLSDIHLSNKLQLGLFPTNIQLHSGIS NGNMTNHDESKESLSCLLTMGKSIKSLEKSVDVKKHQFLLFGQPILTEQQISNSCSREVLSHNNSGKNSLAVNEDKEKCF FDSPGKASSAEFSWQLGLDTGHCKVFLDSEDVGRSLDLSCLGSYEELYMRLANLFGLERSEMLNHVLYRDATGAVKQTGE EPFSDFMKTAKRLTILTDSGSKSIRAWITGTRNGEHGLDASNQTGPLSIFA 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 673 673 0.0
PANTHER 1 673 673 0.0
SUPERFAMILY 100 207 108 2.09E-29
Gene3D 104 208 105 2.4E-39
CDD 105 206 102 8.69624E-22
ProSiteProfiles 106 208 103 13.14
Pfam 106 207 102 3.0E-22
SMART 106 208 103 4.1E-22
Pfam 278 361 84 3.8E-33
Gene3D 315 389 75 2.1E-28
ProSiteProfiles 580 660 81 15.323
Gene3D 580 664 85 3.1E-10

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Biological process Response to hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus.

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0358900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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