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LotjaGi2g1v0360500.1

Overview

Field Value
Gene ID LotjaGi2g1v0360500
Transcript ID LotjaGi2g1v0360500.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description RING/U-box superfamily protein; TAIR: AT5G60580.2 RING/U-box superfamily protein; Swiss-Prot: sp|Q0P496|MARH4_DANRE E3 ubiquitin-protein ligase MARCH4; TrEMBL-Plants: tr|A0A072UK25|A0A072UK25_MEDTR RING/U-box protein; Found in the gene: LotjaGi2g1v0360500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:85798365..85804009) extracted from Lotus japonicus Gifu genome v1.2.

CAACAATGTAAGGCTAAGATTGCATTCAACATTTCGATCCCAAACAATTACATTAAACTTTTTAATAAAGTTAATACTAT TGATGTGTTGATTTAAAACATTATCTGTAATGTATACTTTAACAGCCTTGAGAATAATCCACAGAGTCTGCGCGCACTGG AGAATCAAAAAGTATGACAATGAGAGTGGCAGTAGCAATAGTCCATGCTACCCCACCATCTCCACCACCACCACCGTACC AACAGTGACCAAATTTAATTGACTCATAAATGTGAAAGCTTGGGTTATGTGCATAATCACACTCACTCACTGTCCCTTAT CTATGTGACGGTGTTACTCATTTAAAGTTTTCTCCATTCCTTGTCTCTGTCATAGCTCATCTGAAGTAAGTGGTTGTTGC TTGTTGGTATGGCTATGATTGGTGTCTGCAAGTCTGCAACTATTGAAATTTACTTGCTTGTGTGGTTGCTTTTGGAATTC TAAGTTAAGGGTTTGTCTTCTTCCTTTTTTTCTGTTTTGGCAACAGCAACATGAGTTCAGAGGAAAAGCATGTCAGTGAA GAAGATGCTGCAGCTTCTTGCAGAAGAACAGTTTCTCTTGCTGTTAACAAGGTACTTTGTGTTCTTCCTCCTTCAACTTG TGTTTCATGTCATGGCCTCATGGGGGCTTCAGGCTTGTTTTTTTTTTTTTTTCTTAAGGACTAACTGTATTTTAAACTAT TGAAGTTTTTTTTTTCTCTTTGCTTTGGATTTGTGATTTTCTCTTGATGATGTTTCATCAGACTGAGATTTTCAAACAAA ATCTTGCTAATTGTTACTGAACACGCAGAATAATATTTTTGATAGTAAAGTTTGCATATTTTTTTTTTCAATAACTAGGG GCCTTAACAATTGATTTAATATGTTTATCTATAATTTTGAAAAACTTTGGAGCTTGATCTATCTGAATTTCCATCAATTG TATCCGTTCGGTAGAGAAATATTTCTATAAGATATAGTACTTTGTTTGATTTTGGAGCTTGATCTATCTGAGTTTGTTAT GATTTCTTATGTGTGAATGAAAACTGAGTCCAGCAAGCGTTCTGCTTTTTTATGTTTCCTCTGTCTACTTTGAATTATGC AGTTAAAACCTGTTCAAGAAAGTATTAGTAAGAATCAGTTCCAGTTCTTCCTAAATTAAGCTATTTCCATTGTACTGTGA TTTGAATATGATGTCTTCTCATTATATTCAATGGTATTGAATTTTATTGCAACTAGGATTTTCGAGAGTTCCACAAAATA TAGTTTTTGATCGAGCACCATGGCCGTCGGGTGATCATATAGCCGACCTTACTTAGTGGGATACGATTTTGTTTTTGCCA GGATTTCCCAGAGCAAGTGCTTATTGGGCAATTCTGCTAGATATTGTAGCTCAGTTTTATTTCAGTGCCTGCATCACTTA GTGTTAATTCCCTCGTGTTCGTAGGGTGAAGATCCAATGGGGATAACTGAAGAAACCACACATGTTCCTCCCAGGAAGAG ACAGAATCTTCAACTAGAAGTACCATTAAGAACACCTGAAGAATGTTCCCAAGATTTTGTTGCAATCAAAATGCCACAAA CACCAAGTCCCACACCTACCCCTACTCCTAAGAGAGTGAATTTCCTTGTGTCTTCTCGCTCTGTTGATACTCCAACAAAT AATTCACCTGGGAATTCAGCATCAAAAGGAAGATCATCCATAAGAAGCCTCCTACCAAAATTGAGCTTCCGGAATCGGAC ACCAGCAGATATTGAAAAGGCTACAACACCAACTCCAGAAGTTTCCTCTTCAGGTGTTCGAGAAAGGCCTTTAATCTCAA GATCATTGTCCCTTAGTAAGATATTTACTCCTAGGATTAAGAGAACATCGTCGTTACCGGTAGAAGAAATTGGACATTCA AACGCAGAATCTGCTCATGGTGGAAGCGTTGGGGGTCATCTAAATGTAAGATTCAAGCAATGCTGTTGTCAACTTCCCTT TTTCTAGTGCTATTTTTGGTAGTCATTGTTGCTGAGTCTTGCTTTGTTTTAACAAATTAGTTCCTTTTTGCAGAAGAGAG AAACTCAGCGAAAGATAGCTCGTTCTCTTTCAGTGCCTGTCAACAACAAAGAAAAGAGCATAAGGAGGATGGACTCATTT TTCCGCGTTGTTCCTTCTACTCCTCGAGTAAAGGAAGGAAATGAATTGTTGACCTCATCCCCGGAAAAGGATATAGGTAT CTCAATATAAATACTTATACTTGTATCCGCAATCATGAAAATATGAAAGAATTTTATGTGTTAACTCTCTCTCTAACAGT TTTTTTTATTGAAACTTCCATGATGTATCAAGCATTAGTACTAAAAATGTCAACAGAATATTTGTAAGATTACTATGGTT AATAACTCGATTTATATATACTTTATTTGTTCAGAAAATGAAGATGATGATGGTGAAGATATACCTGAAGAGGAGGCTGT GTGTAGAATCTGTTTTGTTGAACTAAATGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTC TGGCTCACAAAGAATGTGCTATTAAATGGTTTAGTTTGAAGGGTAACAAGACCTGCGATGTTTGCAAGTCAGAAGTTCAA AACCTACCTGTAACTCTATTACGGATTCAAAGTGTTCGAAATCGGATTATTGGAAGTAGGTCTCAACTGGAAGATTTAGA TGGATACAGGCATGTGTACTTACTTTGATAAAGACCTTTGCTGATTTCTTATGAATGAATTATGACGACATGTTTCAATT AGGAGGTTAACAGATTTTATATAGTCTACTAGATCCACATTTCAAAAATATAAGCCACCTCCTGACACTAATCCCTTATT TGACTAAAATTTGCATTACTTATCCCTTGTATACTGCTTTTTGCTATCACACTATCTAGAAGCACTGAAGTTGTAGCTGT GTGGACTCACATGCTATCTCAGGATTGAGACACAGTTTTTTATCCAAACCATCTATGATACTTTAGAAGTCAAAATTTTC CTTGGAGTTCTGCAACCACTAAAGTGCATTGTCTTACTAGGGAAATAGACTGTTGTCATTATGTCATTTTCACGAACCAA CTATTCAAAAAGTTTAGTGTGTGATTAGGTTTTCATTGTACTTCACGCTGATCCACATTGAAGTAAACGTGACAGTAACT TGCTTCTCTGTTTATGCGTTGGGGGGGGGGGATGTGTATCAATGCAAACAGGAATTAAAACACACACTAAGATGTTGGGT TAAGTACACACCCCTCATGGAAAAGCTCATAGGAAGGGTGGAGACCTACTTGTGCTGAAATTCAAATTTTTATTGATCAC TTGGTTATAGAGGCTCTGACACCATAACATGAACAACTATCTCAATTTTAGGTTTTTGGTGAAGATACATAAATGGTTTT ATATTATATATTCTAACAATATTTCTTGATAGCTTCTTGTACTGTGGGTTATTACTTATTAGTAATGATTCTCTTATAAT TTGTCTTCTCAATTTAATAGGTTTTGGCAGGAAGTTCCGGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCT GGAGCAGCTATTGGTAAGACTAACAATCATCTCTGAACGGTCAAATTCGCAGTTTGGTTAGGCTCAGTTATTCGCCTCTA TGCAGGTTTCAAAAATGGGAACTGGCGCGATTGCCATATCTCTTCCATTTTCTTGTGTACTGGGTCTGCTCTCCTCCATG ACTTCATCAACCATGGGTAAGTTTGCAAAACATTGGTAAATATTGATGTACATTTTTTTTCAATGTGATACATATTTTTC TTTTTAGCCAATTTCATTTCATGATACTAGGTTGGGTTTTCACTGATTTATGCCAATTCTAACATTTTCTTAAAAATCTT GTGTCCAGTGAAGAGCAGGTTCATCTGGATCTATGCATCCGTCCAATTTGCTCTGGTGGTTCTCTTCGCGCATATATTTT ACTCTGTGGTAATGGATTTTTGTCTAAACTTCATTTTTTTACATGTACATTTCACTTGAAAGTTGAAACCAAGGTTGATA ATATTGTATGAGAAATAAATGGTCAAATGAATCAAGTGCTAGATTTTTGTCACTAAAAGAAAAATGAATTGTTTGAGATT TGGTACAGATGAATTCTACCCTCTCAATTTTGTAACTTAAATGACAATTTCATTGGAGATGTAATGGAACTAGATGTTCC CAACCAGATTCTAGAGAAGTTCTGGTTTATGAATATCCTGATTCCACATGCCTTATTGCCAAATGTGGTGGCTTTGGTGT TAAGTTTAGAAATTTGCAATCCACACTTCGTGCATGTTTGGAAATCCTTTCACAATTGATTCTTAGGTCAAAATCAATTT TGGAGAGAAGCTTTATGAGTAGCTTCTGGGTTTCAGAATTGATTTCTGAGAAATAGGAATGGTCTAGAGGAAGAACTCTG GCTAGCATTCTGACTTGTTATATATATTGTCTTTGTTACATGCAGGTTCATGTGCAAGCAGTTTTGTCAATCCTTCTTGC AACATTTGCTGGTTTTGGTGTGGTGATGTGTGGGAGTTCTATCCTTGTGGAGGTTTTTAGATGGAGGAGGAGATGGCAAG CTTTATCAGAGCAGCAACAACTACATGGCCCTCAAACTGCAAACACACCACGTTCAGGCAGTGTTACTCAACCTGTGGTG CAAAATCAACAGAACTGAAACCAGAACTGCATCGATGTTTTTTTAGCTTCTCTTAACAAGCTAGGGGCTGCAGTGAGTTG CTTTTCAATTCAGAGGATTTGGAAGACACTTCTTGTGTATAGGGAATTGAACTTTATTACTTCACACCTACATTGGCCTT CATTGTACAGCTTGTGTTAGCAACATGTTTGGATACCCGTTGGTACCAGTGCAAAGGGATGTTAGCACTCAGTTCTAGAC AAAAAGTGAACAATTTTTTTCTTATGGATTGGGATCATAGTTTGTTCAAGTTACACCCAACTGGTATCCAAATACACATA CAATGACCTGGACTATAGCTTCTCTTGCTATGCAATTTCTGTTTGTTTATTTGTACTGAGCATCAGAAGGCTTTCATTTT TGTAGTGTAATTGGATGACAGACAATGATTTTGTTTTTGGTTGAACACAGGGCATGGATTGAGGAAATAATTTGGTTAGA TTATCTTAGAGTTAGAGGTTGATCATTGATGGGACAATGTCTAATGCAATGATGTGGTAAACTAAATGTACGTTTGATTT TGTGTGTACGATACACAAAATCGATTCACACTTACAGAAGCTAAGGGAAGTAGTTTTTGTGAACCACAATTTTGGTTTCA ACTGAATGAGTTCTGTTCAGCAAAGTTTTATGTGAGAATAATAGTTGACTAATCTTCATAGATGGTTAAAGCTTCCTAAG TTTCACTAAAGTACTTATCAGTTATCACCTTGCAGTCTAATCATATCTTCATAGCTAGACTGTTTCCCATGTGACTGGAA ATAGCTTCTTATGTAAAAAAATAAGGTAAGATTGGGTAAAATACACCAAATGGTGGAACCTTCTTCTAGAACCCTGCGAA TGCGGAAGCTTTGCACATCAAGCTGCCCTTTTAATCAAGGTATTT
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0360500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTTCAGAGGAAAAGCATGTCAGTGAAGAAGATGCTGCAGCTTCTTGCAGAAGAACAGTTTCTCTTGCTGTTAACAA GGGTGAAGATCCAATGGGGATAACTGAAGAAACCACACATGTTCCTCCCAGGAAGAGACAGAATCTTCAACTAGAAGTAC CATTAAGAACACCTGAAGAATGTTCCCAAGATTTTGTTGCAATCAAAATGCCACAAACACCAAGTCCCACACCTACCCCT ACTCCTAAGAGAGTGAATTTCCTTGTGTCTTCTCGCTCTGTTGATACTCCAACAAATAATTCACCTGGGAATTCAGCATC AAAAGGAAGATCATCCATAAGAAGCCTCCTACCAAAATTGAGCTTCCGGAATCGGACACCAGCAGATATTGAAAAGGCTA CAACACCAACTCCAGAAGTTTCCTCTTCAGGTGTTCGAGAAAGGCCTTTAATCTCAAGATCATTGTCCCTTAGTAAGATA TTTACTCCTAGGATTAAGAGAACATCGTCGTTACCGGTAGAAGAAATTGGACATTCAAACGCAGAATCTGCTCATGGTGG AAGCGTTGGGGGTCATCTAAATAAGAGAGAAACTCAGCGAAAGATAGCTCGTTCTCTTTCAGTGCCTGTCAACAACAAAG AAAAGAGCATAAGGAGGATGGACTCATTTTTCCGCGTTGTTCCTTCTACTCCTCGAGTAAAGGAAGGAAATGAATTGTTG ACCTCATCCCCGGAAAAGGATATAGAAAATGAAGATGATGATGGTGAAGATATACCTGAAGAGGAGGCTGTGTGTAGAAT CTGTTTTGTTGAACTAAATGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACA AAGAATGTGCTATTAAATGGTTTAGTTTGAAGGGTAACAAGACCTGCGATGTTTGCAAGTCAGAAGTTCAAAACCTACCT GTAACTCTATTACGGATTCAAAGTGTTCGAAATCGGATTATTGGAAGTAGGTCTCAACTGGAAGATTTAGATGGATACAG GCATGTGTACTTACTTTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0360500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSSEEKHVSEEDAAASCRRTVSLAVNKGEDPMGITEETTHVPPRKRQNLQLEVPLRTPEECSQDFVAIKMPQTPSPTPTP TPKRVNFLVSSRSVDTPTNNSPGNSASKGRSSIRSLLPKLSFRNRTPADIEKATTPTPEVSSSGVRERPLISRSLSLSKI FTPRIKRTSSLPVEEIGHSNAESAHGGSVGGHLNKRETQRKIARSLSVPVNNKEKSIRRMDSFFRVVPSTPRVKEGNELL TSSPEKDIENEDDDGEDIPEEEAVCRICFVELNEGGETFKLECSCKGELALAHKECAIKWFSLKGNKTCDVCKSEVQNLP VTLLRIQSVRNRIIGSRSQLEDLDGYRHVYLL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46158
1 347 347 1.0E-146 –
PANTHER
PTHR46158:SF1
1 347 347 1.0E-146 –
MobiDBLite
mobidb-lite
1 147 147 - –
MobiDBLite
mobidb-lite
82 119 38 - –
MobiDBLite
mobidb-lite
128 142 15 - –
MobiDBLite
mobidb-lite
235 256 22 - –
Gene3D
G3DSA:3.30.40.10
250 322 73 7.1E-15
IPR013083
ProSiteProfiles
PS51292
257 319 63 19.361
IPR011016
SUPERFAMILY
SSF57850
261 316 56 3.13E-13 –
SMART
SM00744
264 313 50 1.0E-17
IPR011016
CDD
cd16495
265 313 49 1.21292E-14 –
Pfam
PF12906
265 312 48 3.2E-11
IPR011016

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0360500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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