Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi2g1v0362500.3

Overview

Field Value
Gene ID LotjaGi2g1v0362500
Transcript ID LotjaGi2g1v0362500.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Acyl-CoA dehydrogenase; TAIR: AT3G45300.1 isovaleryl-CoA-dehydrogenase; Swiss-Prot: sp|Q75IM9|IVD_ORYSJ Isovaleryl-CoA dehydrogenase, mitochondrial; TrEMBL-Plants: tr|A0A151TN61|A0A151TN61_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0362500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:85986227..85990968) extracted from Lotus japonicus Gifu genome v1.2.

TATTTGATGATACAGTTTAAAGAGAGTGTTGCTCAGTTTGCAACTGAGAATATTGCCCCTCATGCTTCAAAAATAGACCA CACTAATTATTTCCCTAAGGTGTGTATGAGGATCTAACTTCTATTGTCATCTTCATGAACATAGCTCATAGTGGATTGGA CATTCTGATTGTGTTTTGATCTAATTTTAGGAGGTTAACTTATGGAAAAGCATGGGGGAGTTTAATCTCCATGGGATTAC TGCACCAGGTAGTCTTTTTTAGATTGCTTTGTGAAGATTTCCCTTTTATATTTGTATGCTGTTGGTACTATTATCTGCTA TTATAGTTTCCATTTGGCAATTTTTTTTCCCCTGTATATTTTGTGTTGATTGCGAACATAATGAATGCTAATTGAGTAAG CAGTTCTTCTTATACAAATGACTTCCTATCACCCTAAAATTTGTGTAATATCCCTCCTTCCCATTAAAAGGGTTGATACT GTTTTATCTGCAGTCTGAGAGTAAAGCCTCATTTTCAATGAAATTGCTCTTCTTTAGGTGTTCTGAACTTAATATTAGTA TGCTTAGCGATTAGCGTCTTTGTCACATGACCTGCCTTGTATACTAACAAACTTCTCCGATTCTATATCTGCTTTTTGCA GAGGAGTATGGAGGGCTAGGTCTAGGTTACTTGTATCATTGTATAGCAATGGAAGAGATTAGCCGTGCTTCAGCATCTGT TGGCCTTTCTTATGGTGCTCATTCTAACCTGTGTCTCAATCAGCTGGTAATTGAAGGGAACTTAAATCTCTTCTGTTATA TGCTTGATGATCTTCTGATAAGTCTTCAATATTTCTACCTTCTGTTTTGTTCAGGTGAGGAATGGAAGCCCTGATCAGAA ACAGAAATACTTGCCAAAGGTTCTAGTTCTTCTTCGTTTGATCTTATTTATCTCTTTGCAATATTTTCTGCCTTTCTCTA TTCTAATGCAAAGTTTGACTTTGTCAGGCAAAATGCTCATAATCTTTGTTTCTTACCTATTTCGTGTGCTCATTCATAGT GTATTTCAATTCTCCCGTGTCCTGTTTATCTATCTATCTGCTAAGTTGATTTTTTTTTTGTTCAATTTTGAAGCTTATCT CCGGGGACCATGTCGGAGCTTTGGCAATGAGTGAGCCCAATTGTAAGATATGCGAAATTGAATGGTAGTGTATTTAATTT TTAGATATTCCAAGGATTTTGTGAAGTGAATTTGTCTTTTCTGCAGCTGGTTCTGATGTTGTCAGTATGAAATGCAAGGC TGATCGTGTTGATGGGGGCTATGTACTTAATGGGAACAAGATGTGGTGTACTAATGGGCCAGTTGCTCAAACATTAGTAT GTTCCTTTAAATTTCGTTGCACTATCCCTTGCTCTTTTCATTGACTGCATTCTCTTTTAATATGCCTAAAGAAAATCAAA AGGGTAATGTTTCCTGAATTTGTAATTTCAATGGACATTCTTTCAATGTAACAACATATCATCATCATCATCATCTTTGG ACCTGATTGCAAAATGATGAATTAAGATATGTCGTAAGGCTAAATTTATTACACCATGCATGTATAAAATGCAGGGTATA AATGCTAACCATATTTATCACATATTTCATTGCACACATTTCACTCCTATTTAACATCCAGCAGAACTAATCTAAGAGGA CCTGTCTTAGTTTGCTTGACTAATTTCTTTACCTATGGCTTAAATGGGTAAATGGAATACCCATTTTGTATAAAACTAGA TCTAGTAGTCTAGGCATATGCTGAGGGTGCATATTGAATATTTGATTGTTTTGTGAATTGAATCAGGTTATCTATGCAAA AACAGACATAACAGCTGGGTCAAAAGGAATCACTGCATTCATCATTGAGAAGGGAATGCCTGGGTAATTGTACTGAACCT TGACCAGAAATTATATGATATTGAGTGGACAAAACTGTGTTTAGTGTGATTATATGCTATGGCCAATCTAACTACAGGCG GTTAATATTTGTGGGCATCACATGATTTGAAGCTATTGTTTCACTTTGACCACAAGTGGTGTTGCTCAAACTACTGGATA TCTTGGACAAAAAAAAAACTACTGGATATCAAACAGTACCTTATACCAAATTTCTCCCACTTTTTGTTCAACTCTAGACT CTGTGTAGTGAGACTTACCATGTTCTGTTGCAAGAATGCAAAATAGTTTTAGTTAAAAAAAGAAAAAGTACTGGAACCTT TTAGCAACGAAGAGTTCAAATTGATTCGTAAGCCTTTTAAAAATATTTCTCTGAAAATGAATGAGGAAAAAGAGTCATGA TTACTCAAAGAAAAGAGAAGAAAAATAAAATTCGCATGGCACTGTTGAGATGATGGTGCCTTATATCATAAATGAAAATC TAACATTTATTTCTGTTTGACTACAGATTCAGTACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACGTA TGTATGCATATTCTATGAGAAATTTTCTACATCTAACCCATTGCCGACTACTCCCCCTTGCTTTTACTGATAATATGGAA TTGTGTGTCCAGATGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGAAGAAAATGTTCTTGGGAAAGAAGGGAAAGGTC TTGCTATTGCTTTTTCAGTCTTCTTTATTAATTTTAAAAAGAAATCATCTCTATGTTATTGAATAGACTTGAGAAGAAAG AGCTTAAATTTAAGTTCTGTTTTTCAGCTTTTTATTTTTTGATACAGCCTTTAAGAAGTTTTTATATTAAAAACAACAAG TATTGAAAATCAATTACCCTTCCACTTATTTCAGAAGTTGAGGACCATTAGCTTTAAATCCATATTTTTTCACCCCAAAC TAAATATTATTTGGTTCCAAAGGGGCTCATAGTCCGGCCTGAAAAAGTTTGTTGCAAGACTATGATTATCCTTACGCAAT ATGCCCAACATTGATCCATGAATCTATCATATCAGCCTCTTGTGTGTGTGTGTGTTTGTCTTTCTAAGCATGTTTAATCA TTCGATGAAATAAAAAAAAGAGCATAGTTTGTTCTAATCTTTGTTAGACAAAGAGAGCCATCTGTTTTTCTCTTTTTCTG TTTAAACTATTTTTATTATTCATCATATGTCAACTATCAACCATAGTTTGGTAAAACCACCTCTTTCATTTTGTTCAGGA GTGTATGTAATGATGTCTGGACTGGATTTAGAAAGGCTTGTTTTGGCTGCTGGTCCCCTGGGTATTATGCAGGCATGTCT TGATGTTGCCCTTCCTTATGTTCGACAAAGAGAGCAGTTTGGTCGTCCTATTGGGGAGTTTCAGTTTATACAGGTTCATA TATGGACAGCGTTAACTTATTTTCTGCAATTGTCTTGCATGTGTATAGTATGTGAATCTTACCCATCACACGTCTATTGA TCTTTTGGTTACAGGGGAAAGTAGCTGACATGTATACTTCTTTACAGTCCTCAAGGTAGAAGGTTCTAATGTCATCGTAC TCTCTTTTCTCTCTAAATAAGTTTTCATGGCAGTACATAACATCCTTCATTTCAGGTCTTATGTGTATGCTGTAGCTCGG GACTGTGACAATGGAAAAGTTGATCCAAAGGTGCTTCCACATATCTTTATCTTGTGGTCAATATGGTATTAAGTGTATTT TTTGTAATTCTTCTACAATTAATTATGAAGCTAAAATCAATTCTGGGGAGAAGTTACTTTGAGTAGTTTATGGGTGGCAG AGTTGATTCTTAGAAAAGAGATGTTGATCTGAACATGTTTTAACTTTTTTTTCCTCTTGAAAATGTATGCTTCTTATTTT GTTCTTTGAATGAATTATTTTCTATTCATGAAATTCTCTCCATATTTTTCATGCATTACAGGTATTGCATGAAATGATTA ACCTTTCTTATTTTGTTTTTTCATGTTCCTGTTTTTACCCTAGTACTTTGCTTTAGGTTTTGCATGGTATAATATGTTCC TGTTTATTGTTCATGTTTTTGCTATTGTTTACCAAACTTCAGCTAAGATGATGTTGGTTCATTATAATTCTACCAGCACA AGTTCAGCCTAGTCTTTAATGCAACAAACTTCTATCTTTCTGTTTTTCACCATAGTTGTTTGCCTATTCATCTTAAAACA TACTGACTCGGCTACTGATTTCAGGATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCTTTGCA GGTAAATGAGTTGCTTCCATGGGTTATAGTTAGTTAGGCATAACTTGAATTTTAAAATGGTATCAGAGTCTATCCTATAT CAGCTTTTCGGGTCATCCATAAATGAGTCACCTGCAGATACCCAATTCTGCAAACTTCACGCTCCATATGTCCAGCATTA AGCATGAGGGGGGAATGTTAAAGTCCCTTATTAACTACATATATTAACTAGAGATATAGCTAAAATAGTCCTTACATAGG GTAAAACAACCCACACACCGTGAGCTTTTGGGGTAGAGTTAGACATAGCCCAAATTCTAAGAGTTGTTGTTCTGTTGTTT ACATTTCTCTGTGCTTATCTCCTCCAATTTTGCAGGCCATACAATGTTTAGGTGGGAATGGCTATGTGAATGAGTATCCA ACTGGTCGTCTCCTGAGAGATGCTAAACTCTACGAGATTGGGGCAGGAACTAGTGAGATAAGAAGAATGATTATTGGACG TGAGCTCTTCAAGGAACAATGA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0362500.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATACAGTTTAAAGAGAGTGTTGCTCAGTTTGCAACTGAGAATATTGCCCCTCATGCTTCAAAAATAGACCACACTAA TTATTTCCCTAAGGAGGTTAACTTATGGAAAAGCATGGGGGAGTTTAATCTCCATGGGATTACTGCACCAGAGGAGTATG GAGGGCTAGGTCTAGGTTACTTGTATCATTGTATAGCAATGGAAGAGATTAGCCGTGCTTCAGCATCTGTTGGCCTTTCT TATGGTGCTCATTCTAACCTGTGTCTCAATCAGCTGGTGAGGAATGGAAGCCCTGATCAGAAACAGAAATACTTGCCAAA GCTTATCTCCGGGGACCATGTCGGAGCTTTGGCAATGAGTGAGCCCAATTCTGGTTCTGATGTTGTCAGTATGAAATGCA AGGCTGATCGTGTTGATGGGGGCTATGTACTTAATGGGAACAAGATGTGGTGTACTAATGGGCCAGTTGCTCAAACATTA GTTATCTATGCAAAAACAGACATAACAGCTGGGTCAAAAGGAATCACTGCATTCATCATTGAGAAGGGAATGCCTGGATT CAGTACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACATGTGAGCTTGTCTTTGAGAATTGCTTTGTTC CAGAAGAAAATGTTCTTGGGAAAGAAGGGAAAGGAGTGTATGTAATGATGTCTGGACTGGATTTAGAAAGGCTTGTTTTG GCTGCTGGTCCCCTGGGTATTATGCAGGCATGTCTTGATGTTGCCCTTCCTTATGTTCGACAAAGAGAGCAGTTTGGTCG TCCTATTGGGGAGTTTCAGTTTATACAGGGGAAAGTAGCTGACATGTATACTTCTTTACAGTCCTCAAGGTCTTATGTGT ATGCTGTAGCTCGGGACTGTGACAATGGAAAAGTTGATCCAAAGGATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGA GCAACCCAGGTTGCTTTGCAGGCCATACAATGTTTAGGTGGGAATGGCTATGTGAATGAGTATCCAACTGGTCGTCTCCT GAGAGATGCTAAACTCTACGAGATTGGGGCAGGAACTAGTGAGATAAGAAGAATGATTATTGGACGTGAGCTCTTCAAGG AACAATGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0362500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIQFKESVAQFATENIAPHASKIDHTNYFPKEVNLWKSMGEFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASASVGLS YGAHSNLCLNQLVRNGSPDQKQKYLPKLISGDHVGALAMSEPNSGSDVVSMKCKADRVDGGYVLNGNKMWCTNGPVAQTL VIYAKTDITAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGKEGKGVYVMMSGLDLERLVL AAGPLGIMQACLDVALPYVRQREQFGRPIGEFQFIQGKVADMYTSLQSSRSYVYAVARDCDNGKVDPKDCAGAILCAAER ATQVALQAIQCLGGNGYVNEYPTGRLLRDAKLYEIGAGTSEIRRMIIGRELFKEQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.10.540.10
1 114 114 9.1E-41
IPR037069
CDD
cd01156
2 373 372 0.0
IPR034183
PANTHER
PTHR43884
2 375 374 2.8E-242 –
PANTHER
PTHR43884:SF27
2 375 374 2.8E-242 –
PIRSF
PIRSF016578
3 102 100 0.3 –
SUPERFAMILY
SSF56645
3 234 232 8.9E-82
IPR009100
Pfam
PF02771
3 112 110 2.6E-34
IPR013786
Gene3D
G3DSA:2.40.110.10
115 228 114 3.7E-46 –
Pfam
PF02770
116 211 96 1.9E-24
IPR006091
ProSitePatterns
PS00072
118 130 13 -
IPR006089
PIRSF
PIRSF016578
124 375 252 7.5E-17 –
SUPERFAMILY
SSF47203
221 373 153 3.06E-50
IPR036250
Pfam
PF00441
223 371 149 2.8E-45
IPR009075
Gene3D
G3DSA:1.20.140.10
229 375 147 2.0E-51 –
ProSitePatterns
PS00073
330 349 20 -
IPR006089

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003995
Molecular function Acyl-CoA dehydrogenase activity Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor.
Subterm of
GO:0016627
Molecular function Oxidoreductase activity, acting on the CH-CH group of donors Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
Subterm of
GO:0050660
Molecular function Flavin adenine dinucleotide binding Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0362500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…