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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0363200 |
| Transcript ID | LotjaGi2g1v0363200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | exonuclease V-like protein; TAIR: AT5G60370.1 exonuclease V-like protein; Swiss-Prot: sp|Q9FKK6|EXO5_ARATH Exonuclease V, chloroplastic; TrEMBL-Plants: tr|I1LKD2|I1LKD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0363200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86062488..86066278) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTCAACGGCCACATTCTCCACCACGCAACAACGAAGAAGACGAGGCCAACACCACCACGATCACCATTCACCGCGAA CATGGCCGAAACTTCCTCAGACCACACTCCTCATATACCCATCGAAATCATCACTGACGACGAAATGGCTCTCATTGAAG CTGCTTTCGCTTTCGCTTCCGCTTCCGCTCGTTCTGCTTTTCGTTCATCAACACCGCCACCACCACCACCACCCCTTTCT CCTCCTTCTTCTTCTTCCCCTCTCTTTCGCTCCAATGCACTCTCCATCAAATCCATCACAGTTCTATCCAAGCGAAGCTT CTCACACGCCACTGGCAGTGGAACGAGTACCCACCACCCTGACATTGAGGATTCTTCGCCCAAATTGAAAACCCTTCTTC CTGATTCCTTTCTCCACCGTTTCAGGAAGAATCGTGGCTTGTCTGTCACTGATATCACATCTACGGTGTCAAAATTGTTT CTTTACCTTTATCTTTTAATGGGTTGTGAGCATGTTTTTATTCATGGTGTTTGACATTGCCCAAGTTGAAATGGATACAC TTTTTGATTGAAATTACTATGAATGTTCTTAATGATAAGTTCTTGTGTGAATTGAAATCAGCTTCTGCAGTTAGCTTCCT CATAAGCACTTTCATAAGTACTAAGCTCTTGTAAGTTGCAAATTTGTCCAAACTAGGCCTGTGTTTGAAGTAAAATAGGA GGAATAAGATGTAAAGAGTTTTGTATTACATTGTATCCAAATCCAATGCAGGTATGGAATAGTGTCAACTATGAACTCAT TGTTCACTGTTTTTCTTACCATTTTGTCCATTTAAGCAAATGAGTGAAAGCCCGAATTCCATTCTGTTTCTGGAATGATA TGTTTATTCTATATGAAGGGAAGGCCAAATTCCTTCTTAATTTGAACTACTTGTATGATTGTTGATTCACCAGAGATATA AAATCAATCTTATGACCTTCTGTAAGCTTTTGAATTTTGATGTAATTGGTGAATAAGGACTGCATGTTCTTAGGTTAGCG GAAGTACATGTGTCAGAGTAGATTTGATTTCTTCTTAATGGAAGAGACTAATAGGTAGCTATCCCATCCTTGATCAGTTA GTTAGTAGATTTGTAGCTTAGTTAGTTGGAGAGTTAAAGGTGAAATGTTATAGAGAGCGACTTGATCTTTGGGGTCATTG TAGGGAAATTTGGGGAGATTCCTGGATCTCTCAAATAACGAGGAGTTCAGTATACTTTTCATCGGTTAACATAATTATCC GCCCGCTCCTATCATAGACCTACAATTACCTGTCTTTTGTGTATAATGTTATATTCTTTTTTGTTAGATATGTGGAGTCT CACTTGGTGTGGTGTTAATTTTTTCATTTTGGCTGAATACTTTTAGATTTTTATTGATGCCATGCAAAACTTTGTCTGTT TTGAGTAAAAGGGTCGTGGTCAAGTACTTAACTCTATTGAATTTTGTGATAGGAATGGTGTTCAAAGCAAATGGAATTTG CTCTCACTCTTGGAGGGAGGAAGACCAATCAAGTTATGAGAGCTGGCATTGCCCGGCATGCGAAACTTGAAGAAGAGGTA CTATCTTGATTCCTCACAACTCGAATTTCTTACTTCGGGTAACATACATGGTCCTCTTACGCATGGTCCTCTTACACTTA TAGTAGTTGAAATCTGTTACTATTTTCATGATTTCTCTATCATCCAATGGTATACCCGTGTCTTATGAGCAGTTCTTACA TGTGCACACTCAAACACTGATGTTGTTGGGTGCAGGTTATAAAACGGGTGGAAGTAAATATCAAATCAAAAGAAGATCAG TGGGCCCTGAAGTTTCTTAATTTTATTAATGGTGTGAATCAACTATTCTTTGAAGGATTAACTCGTGAACTGCCAATGTA AGTTACTGACATTTTATGAGTAAATACTCAGGTTTTCATAGGTTAATAGATTGTGATAACACTAGAAATCAGGTTGTTAA CGTGAACTTGACAGTCGAAAAATTGGTTTAGGTTCCGTTATGTTCTTATTGAGTTATGCCTTCTATTATGCTTCAAGTTT TATATGTTCCAACCCATTAAGTTACAAATCTACTATCATACGGTGAACTAAGCTTTTGGAAATTGATAGAATTAACTGGA GTAGTTTTGGTCTTGATGGACTATTCTTACTTCTGATATCAGAATGGGCTTTGCAGAAGATACATGGATAGTAGGAGTGA TTGATGAGATTCGGATGCCATCAACAGAAAATGATCATAATCCGATACTAATTGACACAAAGACACGTGCTCGTGATACT CTACCTTCTGAACCACAGCGAAGAAATGGAAGGTATGTTTATTCTTTGACATTTATTTCATTCTGTTTGATGTGGAATTA CTTGCTAATGCACTTGATTAAATCATTGAATTGCTCTTATTTTGGCAGGCTTCAATTAATGTGTTACAAGTATTTGTGGG ACAGTTTAGTCGCTGATGATTTCCCTTCTGAAAAGTTTTTTACTAATTTTGGCTTAAACCCTGAACAAACTCTGTGTGAA GATCTGAAAGTGAAAAGTTCTGACCCCAAATATTCTGCATTGGTAAGTAGCTTTTTTATAATGTTCTCTTTGTAATAGTC ATCTATTTTTTTTTGGTTTATGAATTATTATAAACTAGGTGGTTAAGCGATGCTGTACTGCTCAAGTGACTGAATTAAGG GTATATTTATTCATTCATAAACCAAGTATTAAATAAGTGACTGAATTCTCCTGCTCAGGACGACTAAGCACTGCTTCTTT CAGTTGTGTTTGGGTTAAGACGGGGTTTCCTCTTAGGAAAAATGGATCTAAGTTTTCATAAAGGGTTTAATTTTATGGCA CTCACAATATATTCTGCTGAAAAGGTTTCAGTTGATTAATTAGTGAAGCAGGCCTTTTAAAGATTTTTCTTTCCTATTAT TGACAAATGCAGACCCTTGATGATGTGGTGAGATATTACAAAAATACATGTAGCATGCTGCTCCCTGCTCACGATCAGCT TTTATTGAGGTAAGCTCAGAATTTTCAGTGCAGAATTGTAATTTTTTCCCCTAATGTCAAAGACAAGGAATGGTGGTATG TCATGTTGATATAGACACAAGTCACAATGTGAATGAGTAGCACTTGGATTGCATTACACGGGTTCTTCTTTAGACACTTT TTTTTTACACTATATTTAAAGTTTGATTTTGTAAGGAGGAAATGGTTTTCTTTGTTTCATGTCAGATATGAATATCAGAA GGATCATTCGCTGATCGGTGAAGATAAATTTGCATATGATTCCGAGTGGCTAAAAAGTCAAATGCATCGTTGTATTGAGG TTTGGCTTGGAAAGCGAGAAACCACTTATGTTCCTGAGGAGGAGAACTGGAAATGTAGATTCTGTCAATTTGCCACTGTG TGTGATGCATCGACTGATAGTAAAGGAACTATGGCAAATACAAGCAATGATTCAAATGCCAAACAAGGCTAGTTATCTCA ATGCTGGCTCTCTATTGCTATCGTTAGCTGCCTCAATAACGGTGGAAAATGAGAATGCCTGGTCCATTTACTATGCATTG TTTTATTCGTTAATCAAAATGCATTGTAGTTGTAGTTGTTGTTGTTGTAGCTGCATGTCAATTATCTTCGAAACTATTTA TATTCCATTCTCATCTTGTATAAATATAATTGTTATTGGAACTTTGTACATATTTTTTTCATACATTTAAAGGCTGGTTA CCAATGAAGTCATCATGAATGCACTGGCGAT
CDS sequence (LotjaGi2g1v0363200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGAAACTTCCTCAGACCACACTCCTCATATACCCATCGAAATCATCACTGACGACGAAATGGCTCTCATTGAAGC TGCTTTCGCTTTCGCTTCCGCTTCCGCTCGTTCTGCTTTTCGTTCATCAACACCGCCACCACCACCACCACCCCTTTCTC CTCCTTCTTCTTCTTCCCCTCTCTTTCGCTCCAATGCACTCTCCATCAAATCCATCACAGTTCTATCCAAGCGAAGCTTC TCACACGCCACTGGCAGTGGAACGAGTACCCACCACCCTGACATTGAGGATTCTTCGCCCAAATTGAAAACCCTTCTTCC TGATTCCTTTCTCCACCGTTTCAGGAAGAATCGTGGCTTGTCTGTCACTGATATCACATCTACGGAATGGTGTTCAAAGC AAATGGAATTTGCTCTCACTCTTGGAGGGAGGAAGACCAATCAAGTTATGAGAGCTGGCATTGCCCGGCATGCGAAACTT GAAGAAGAGGTTATAAAACGGGTGGAAGTAAATATCAAATCAAAAGAAGATCAGTGGGCCCTGAAGTTTCTTAATTTTAT TAATGGTGTGAATCAACTATTCTTTGAAGGATTAACTCGTGAACTGCCAATAATGGGCTTTGCAGAAGATACATGGATAG TAGGAGTGATTGATGAGATTCGGATGCCATCAACAGAAAATGATCATAATCCGATACTAATTGACACAAAGACACGTGCT CGTGATACTCTACCTTCTGAACCACAGCGAAGAAATGGAAGGCTTCAATTAATGTGTTACAAGTATTTGTGGGACAGTTT AGTCGCTGATGATTTCCCTTCTGAAAAGTTTTTTACTAATTTTGGCTTAAACCCTGAACAAACTCTGTGTGAAGATCTGA AAGTGAAAAGTTCTGACCCCAAATATTCTGCATTGACCCTTGATGATGTGGTGAGATATTACAAAAATACATGTAGCATG CTGCTCCCTGCTCACGATCAGCTTTTATTGAGATATGAATATCAGAAGGATCATTCGCTGATCGGTGAAGATAAATTTGC ATATGATTCCGAGTGGCTAAAAAGTCAAATGCATCGTTGTATTGAGGTTTGGCTTGGAAAGCGAGAAACCACTTATGTTC CTGAGGAGGAGAACTGGAAATGTAGATTCTGTCAATTTGCCACTGTGTGTGATGCATCGACTGATAGTAAAGGAACTATG GCAAATACAAGCAATGATTCAAATGCCAAACAAGGCTAG
Protein sequence (LotjaGi2g1v0363200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAETSSDHTPHIPIEIITDDEMALIEAAFAFASASARSAFRSSTPPPPPPPLSPPSSSSPLFRSNALSIKSITVLSKRSF SHATGSGTSTHHPDIEDSSPKLKTLLPDSFLHRFRKNRGLSVTDITSTEWCSKQMEFALTLGGRKTNQVMRAGIARHAKL EEEVIKRVEVNIKSKEDQWALKFLNFINGVNQLFFEGLTRELPIMGFAEDTWIVGVIDEIRMPSTENDHNPILIDTKTRA RDTLPSEPQRRNGRLQLMCYKYLWDSLVADDFPSEKFFTNFGLNPEQTLCEDLKVKSSDPKYSALTLDDVVRYYKNTCSM LLPAHDQLLLRYEYQKDHSLIGEDKFAYDSEWLKSQMHRCIEVWLGKRETTYVPEEENWKCRFCQFATVCDASTDSKGTM ANTSNDSNAKQG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 406 | 402 | 2.2E-138 | ||
| MobiDBLite | 39 | 61 | 23 | - | – | |
| MobiDBLite | 42 | 57 | 16 | - | – | |
| MobiDBLite | 81 | 100 | 20 | - | – | |
| Pfam | 110 | 227 | 118 | 1.8E-34 | ||
| Coils | 158 | 178 | 21 | - | – | |
| Pfam | 324 | 390 | 67 | 2.5E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Single-stranded DNA 5'-3' exodeoxyribonuclease activity | Catalysis of the sequential cleavage of nucleotides (such as mononucleotides or dinucleotides) from a free 5' terminus of a single-stranded DNA molecule. |
Expression pattern of LotjaGi2g1v0363200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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