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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0365800 |
| Transcript ID | LotjaGi2g1v0365800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TAIR: AT1G07850.1 transferring glycosyl group transferase (DUF604); Swiss-Prot: sp|Q9JJ06|C1GLT_MOUSE Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1; TrEMBL-Plants: tr|I1MPH9|I1MPH9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0365800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86334015..86337010) extracted from Lotus japonicus Gifu genome v1.2.
ATTATATTGTGAAAGATAAAATATTTATCTTTGATGGTCGAAAAATATTTATCTATGTAAGGGAAATTTTACAAAATAAA AAAGGGCAATATTTACAAAAGCAAATTCAAATTCGGATTGGGCTACTAGCCCACTATAATTGACCCAGAAAAATACACAA GCCTACTAAATGGTGGAAATAAAATTTAGGTATGCAATTTTCAACATTGCTTCCATTTTAACCGCATTCAACTTCGCTTC CTACCATAACAAACTACACTTAGAAGCGCGAAAAAAAAACAGAAACAAACTAACAAAGTAGTGAGTAAAATTCTATTCCC AACCCTCTTTCTCTCTCTCACCTTTAGGGTGATCCGAACAATTCTGAGTTTGAATGTCCTTCCTACCACCGTCTTTCCCC ACCTGGGAGCAAAAATAGTGAATCAACAACCTGAAAGGAATTGAACACTATTGGAAAACAAATCATCTCAGCTTAACTGG ATCAACCAAATGTACTCTTCATACAAGCAACGCATCATCACTTGGTTTTTCCTAATCATGATTGTACTATACATCCTTTA CTCTTCCAATCTTCTCCTATTAACCAATAGCAAGAGAGATTGTTCCACCTCCATGCATTTATTAGATTCCAACACAGAAG AGCATCCTGATATGAGAGGTAACATATCATCAACTAAAGCTGACATTGAAAGAACAGTTGCTGAGGAGAAAGAAACGAGA GAGGACAAGAAAATAAAGGAGAAAGAAGAAGAGATAGAGGACGAAGAAGAATTACCCCTTGATCAGTTATCTCAAAGACA GGATTTGGAGCTTAAACACATTGTCTTTGGGATAGCGGCATCATCCAGTTTGTGGGACACAAGAAAAGAATACATCAAGG TGTGGTGGAAGCCTAATCAAACTAGAGGGGTGGTGTGGCTGGATAGTAGAGTGAGGACTCGGCCAAATGAGGGATTACCA GAGACTCGAATTTCCGGGGACACCACGAAATTCAAATACACGAATCGACAGGGGCAAAGATCTGCTTTGAGGATTTCAAG GGTGGTAACAGAGACATTGAGGCTGGGGCTGAAGGATGTGAGATGGTTCATGATGGGAGATGATGACACAGTGTTTATAG TGGATAATGTGGTGAGAATTCTTTCCAAGTATGATCACACCCAGTTTTATTATGTTGGGAGCTCATCTGAAAGCCATGTT CAGAACATACATTTCTCATATTCCATGGCATATGGTGGAGGAGGATTCGCTATAAGCTACCCATTGGCCAAGGAGCTTGC AAATATGCAAGATCGTTGCATTCAGCGATACCCTTCTTTATATGGTAGTGATGACAGAATGCAAGCTTGCATGGCTGAGC TAGGAGTGCCATTAACCAAGGAAACAGGATTTCACCAGGTGAATATATTTTCTGTTTGGATGTAGACCAAAGAGCACATA TTGGATCTTATCTAGTGTTTTTTCTATTACATAAACTTCAATAAGTGCTCTTTGGTCCGTTTACAAACGGGATGTTAATA CTGCGTCAAAAAGTACTATTATTACTATGAATGGTGGGTGATTTCAATTCTCAATTTTCAGAAGGAATTGAAATTTTCCT AAGTATATGTTTTGTGTTTATGCAGTATGATGTGTATGGGGATCTCTTAGGCCTTCTAGGGGCACATCCTGTGACCCCAT TAGGGTCATTGCACCACCTTGATGTAGTGCAACCGATATTCCCAAAGATGACCAGAGTTCAATCCCTGAGGCATCTAATG GAGTCTGTGAAGCAAGACTCAGGTAGCATAATGCAACAATCAATCTGCTATGACAAGAAAAGACATTGGTCCATCTCCGT TTCATGGGGCTATGTGGTTCAAATTCTGAGGGGAGTGTTATCCCCTAGAGAGCTAGAGATGCCAACTAGAACCTTCCTCA ACTGGTACAGAAGAGCTGATTACACTGCATACGCATTCAACACAAGGCCAGTGACTAAAAACCCTTGTCAGAAAGCGTTC CTTTTCTACATGAACAAAACAAGACATGATCCAGCCAGGAAGCAGATTATAGGCACTTATTCTCGCTACAAATCTAAACC TCCTCAATGCCGGTGGACAATGCAGTCACCGGAGGAAATCGATACCATCATAGTTTCAAAAAGACCAGACACTCTTCGCT GGCAAAGGGTAGGGATGCTCTCAAACTCACATTCACACATGCATATCATAATCAGATATTTCTTTTCTTTATACTCTATG AACACTAAATGGGTCCTTTTTTACTGACTAAATCATAAAACCTGTTTTTGCAGTCACCAAGGAGGGATTGTTGTAGAGTT CAACCATCAAGAAAGAGCTCAACTATGTACATATGGGTGGGAAATTGTCGAGAGGGCGAGGTTAGTGATTTGTGATTCTC TAAGGTGAAAATTGAGCTACCAAATTCAGGTTATTTTTTTTCTCTACTTTCTTGGCTGCTAGTTGCATCAGAAAGTGCAC AGAAAGAAAACTGAAAAACTACTGTCATTGATCATAATGTCAGGAGCTACTGATCTCATCTTTCTACAGTTTTTTTAGCT CCCCTCTTTTCATCAATGTAAAGTCAACAAAAAGCATAGAAGCAGCTTATTCTATGTGAGAAGTTCATTATTCTTCTCTA ATGCAACAAATGAGACTAATTGCAAAACTATCAACAAAGCACAATTTTACATGACATTGACATTTCTATTCTATACTATC AGAAGAGAATTTACTCACAAAAATCATCAGTATCCTTCAGCATCTTCTTCCCCTTCATTCTTATAAAGAAAACTGTTAAT TCTTCAATTAGGAGAACTCGCTGGAATGAGGTAAGTTTCTTCGTTCTCACCTGACAGATTTAGAGGAATTGAAGGAAATG GTGATGATGCAGTAGCTGCTGCCAATATAGTAATGTCAATTCGATTATCATTCGGCACTGGTATAACACTCTCTCGTATG TCTGTAATTCTACCATCCTTGATCTCCACATCCACT
CDS sequence (LotjaGi2g1v0365800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACTCTTCATACAAGCAACGCATCATCACTTGGTTTTTCCTAATCATGATTGTACTATACATCCTTTACTCTTCCAA TCTTCTCCTATTAACCAATAGCAAGAGAGATTGTTCCACCTCCATGCATTTATTAGATTCCAACACAGAAGAGCATCCTG ATATGAGAGGTAACATATCATCAACTAAAGCTGACATTGAAAGAACAGTTGCTGAGGAGAAAGAAACGAGAGAGGACAAG AAAATAAAGGAGAAAGAAGAAGAGATAGAGGACGAAGAAGAATTACCCCTTGATCAGTTATCTCAAAGACAGGATTTGGA GCTTAAACACATTGTCTTTGGGATAGCGGCATCATCCAGTTTGTGGGACACAAGAAAAGAATACATCAAGGTGTGGTGGA AGCCTAATCAAACTAGAGGGGTGGTGTGGCTGGATAGTAGAGTGAGGACTCGGCCAAATGAGGGATTACCAGAGACTCGA ATTTCCGGGGACACCACGAAATTCAAATACACGAATCGACAGGGGCAAAGATCTGCTTTGAGGATTTCAAGGGTGGTAAC AGAGACATTGAGGCTGGGGCTGAAGGATGTGAGATGGTTCATGATGGGAGATGATGACACAGTGTTTATAGTGGATAATG TGGTGAGAATTCTTTCCAAGTATGATCACACCCAGTTTTATTATGTTGGGAGCTCATCTGAAAGCCATGTTCAGAACATA CATTTCTCATATTCCATGGCATATGGTGGAGGAGGATTCGCTATAAGCTACCCATTGGCCAAGGAGCTTGCAAATATGCA AGATCGTTGCATTCAGCGATACCCTTCTTTATATGGTAGTGATGACAGAATGCAAGCTTGCATGGCTGAGCTAGGAGTGC CATTAACCAAGGAAACAGGATTTCACCAGTATGATGTGTATGGGGATCTCTTAGGCCTTCTAGGGGCACATCCTGTGACC CCATTAGGGTCATTGCACCACCTTGATGTAGTGCAACCGATATTCCCAAAGATGACCAGAGTTCAATCCCTGAGGCATCT AATGGAGTCTGTGAAGCAAGACTCAGGTAGCATAATGCAACAATCAATCTGCTATGACAAGAAAAGACATTGGTCCATCT CCGTTTCATGGGGCTATGTGGTTCAAATTCTGAGGGGAGTGTTATCCCCTAGAGAGCTAGAGATGCCAACTAGAACCTTC CTCAACTGGTACAGAAGAGCTGATTACACTGCATACGCATTCAACACAAGGCCAGTGACTAAAAACCCTTGTCAGAAAGC GTTCCTTTTCTACATGAACAAAACAAGACATGATCCAGCCAGGAAGCAGATTATAGGCACTTATTCTCGCTACAAATCTA AACCTCCTCAATGCCGGTGGACAATGCAGTCACCGGAGGAAATCGATACCATCATAGTTTCAAAAAGACCAGACACTCTT CGCTGGCAAAGGTCACCAAGGAGGGATTGTTGTAGAGTTCAACCATCAAGAAAGAGCTCAACTATGTACATATGGGTGGG AAATTGTCGAGAGGGCGAGGTTAGTGATTTGTGA
Protein sequence (LotjaGi2g1v0365800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYSSYKQRIITWFFLIMIVLYILYSSNLLLLTNSKRDCSTSMHLLDSNTEEHPDMRGNISSTKADIERTVAEEKETREDK KIKEKEEEIEDEEELPLDQLSQRQDLELKHIVFGIAASSSLWDTRKEYIKVWWKPNQTRGVVWLDSRVRTRPNEGLPETR ISGDTTKFKYTNRQGQRSALRISRVVTETLRLGLKDVRWFMMGDDDTVFIVDNVVRILSKYDHTQFYYVGSSSESHVQNI HFSYSMAYGGGGFAISYPLAKELANMQDRCIQRYPSLYGSDDRMQACMAELGVPLTKETGFHQYDVYGDLLGLLGAHPVT PLGSLHHLDVVQPIFPKMTRVQSLRHLMESVKQDSGSIMQQSICYDKKRHWSISVSWGYVVQILRGVLSPRELEMPTRTF LNWYRRADYTAYAFNTRPVTKNPCQKAFLFYMNKTRHDPARKQIIGTYSRYKSKPPQCRWTMQSPEEIDTIIVSKRPDTL RWQRSPRRDCCRVQPSRKSSTMYIWVGNCREGEVSDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 7 | 517 | 511 | 2.6E-280 | – | |
| PANTHER | 7 | 517 | 511 | 2.6E-280 | – | |
| TMHMM | 9 | 31 | 23 | - | – | |
| Phobius | 12 | 31 | 20 | - | – | |
| Phobius | 32 | 517 | 486 | - | – | |
| Coils | 63 | 95 | 33 | - | – | |
| MobiDBLite | 70 | 94 | 25 | - | – | |
| MobiDBLite | 70 | 87 | 18 | - | – | |
| Gene3D | 98 | 306 | 209 | 1.5E-13 | – | |
| Pfam | 238 | 491 | 254 | 8.1E-117 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0365800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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