Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0367800 |
| Transcript ID | LotjaGi2g1v0367800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy metal transport/detoxification superfamily protein; TAIR: AT2G37390.1 Chloroplast-targeted copper chaperone protein; Swiss-Prot: sp|Q58FZ0|NAKR2_ARATH Protein SODIUM POTASSIUM ROOT DEFECTIVE 2; TrEMBL-Plants: tr|K7LPR8|K7LPR8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0367800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86546396..86548491) extracted from Lotus japonicus Gifu genome v1.2.
CAGTAATCATACCACAGCAAAGACAAGCACACTTTCTTCTCCCCAACAATTGAAAAACCAAATGAGGAAAAGAATTAAGA ATTAAACATAAAAAGCAACTTTAAAGATCTAGATTAATCACAAATCTTCCAAGCTATCATTACCAAGTACTTTCCAGTGG GACCTAATGCCTCAACAATATCTCTCTTTTCCCCTCCCTCATTAGTAAGAAAACTTTCAGTTTGTTACTACTTAGCTTCA GGTTCAGCTAGTAGCTACCTACTCCATAAAAAGCCATTCCTTGTGATTTGTATCCCATCATAACATAACACCATGAAAAG AATGGACTTGTTCTGTTCTTCCCCTGCTTCTACAGCAGTAACTTCTAGTTTTGTGTTACACCGAAGCAGAAGCACCAAAA CCTACGACCATGATCGAAGGAAAACCCAGCTTCATGTTCCTTGTTCATCTCAATTGCCCATTAATCCCAAACCTTACTTC GAGAAGCACAGAAAGAGTACTTCATCAGATAATAAGCAACACAACAGTGAAACACGTAGAAAAAGCTCTGTTGAAGTCAA TGACCTATATACTCAATATCCCATTACTACTGATTCTTCTTCCAGGAGGCATCTACTTGGTGATGTTCCACTCATTGATT GGGTTTCTGAGTCTAAGAAAATCACAACAATGGCTTCTTCTCCGCATGGTGCTAAAGCCAAGCCTATGGTTTTGACCAGG AACGATTCTTCTTCAGCTCATTCCAAGGACCAGGTTTCTGTTCAGTTTTGTTATTTATAATTTTTTTTTATATTGTGTGA TCTGCTTGTTTGTTGGTTTTTGTTACTCAAAGGTTTTAAATTGCAGTTTTGTCTGCGTTGCGAAATTAATGCCTATCGAA ACTGCCACAATTGCGGTCATGATACTGTTGCGGGGCTTCAAAACCTGTTAGGTTGCGGTCATAATTTGCAGTTGTGACCG CAATTTAGAAACTCTGCTCTAAAGAATGTAACAAGGAGACTTGCTACTTTTTTCTAATTAGAAATTGAATTGTTACACAA TATAAAGCCAAATTGTTTTAAGTTACATATGGTGGTTGAAAAATGTTAAAAATCACTACTAGATACATAAGATGTGGAAG TTAGTCACAATACCCTTTTATGATTTTTGCCAAATAAGTGTTGACACAAAGCATTTCTTATTTTTTTCCTCTGTAAGATA TAGCAGTGCTGATGGTGATAATGATTTGTCTTCTGGAACCTACAGGTAGTGGTTTTGAGGGTATCATTGCACTGCAAGGC CTGTGTAGGAAAAGTTAGAAAGCATATTTCAAAAATGGAAGGTGAGTTTTCTGGTATACATGATTTTGGGGTTTCAAAAT TATAGTAGGCAAGTATATATGAAGCACTGATAACTCCTGAGCATTTTTTTTATCAATGCAAGAGTGGTTTGTTGGTTAAA ATTTGTAGTTGCATATATTAATTAGCATGTTTGGAAATCCTGCTGGAGTTGATTTTGTAGCCAAAATTAATTCGAGTAGC TTTTCTAGGTGTTAAAATTGATTGTGAAGACTCTTTCAAACATGGTATAAGTGCATGAGAATTTATGTTGAAGCAAAATT AATTTGGGTAGTACTGCAATGTAGGAGTGACATCATTCAACATAGACATGGTGACAAAGAAAGTGACGATCATTGGAGAT GTGAGCCCACTTGATGTGGTGGCGAGTGTGTCCAAGGTGAAGAAAGCACAGCTATGGCAATCACCAACATCGTCAGTGCT ATCATCATCTTCTACGCCAATATCTCTGTGGTCCACATAATCACTTATTAGTTGAACATTGAGAATTTTTCTTTGACCTC TTCCTTTTTTTCCCTCTAGTTTGTTGTTGTTTGATGCACCTACTTGGATGTGCATATTTGTATGATTAGATAGTTTGATG CTTTGTCAAGCTTAATGTGTACGAGTTGTGTAAATGAATAACCCTTCTAGCTACTCTTTTAGTTGTTTACTGATCACTGC TTGTTGGAGCTACTAGAACTTGTGTTAAAAGCTTTTGAGATAGTTGAATTATTTAAGATAGTATCAGAGTTTCTATGATC AAACGGTCTACAGTTT
CDS sequence (LotjaGi2g1v0367800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAGAATGGACTTGTTCTGTTCTTCCCCTGCTTCTACAGCAGTAACTTCTAGTTTTGTGTTACACCGAAGCAGAAG CACCAAAACCTACGACCATGATCGAAGGAAAACCCAGCTTCATGTTCCTTGTTCATCTCAATTGCCCATTAATCCCAAAC CTTACTTCGAGAAGCACAGAAAGAGTACTTCATCAGATAATAAGCAACACAACAGTGAAACACGTAGAAAAAGCTCTGTT GAAGTCAATGACCTATATACTCAATATCCCATTACTACTGATTCTTCTTCCAGGAGGCATCTACTTGGTGATGTTCCACT CATTGATTGGGTTTCTGAGTCTAAGAAAATCACAACAATGGCTTCTTCTCCGCATGGTGCTAAAGCCAAGCCTATGGTTT TGACCAGGAACGATTCTTCTTCAGCTCATTCCAAGGACCAGGTAGTGGTTTTGAGGGTATCATTGCACTGCAAGGCCTGT GTAGGAAAAGTTAGAAAGCATATTTCAAAAATGGAAGGAGTGACATCATTCAACATAGACATGGTGACAAAGAAAGTGAC GATCATTGGAGATGTGAGCCCACTTGATGTGGTGGCGAGTGTGTCCAAGGTGAAGAAAGCACAGCTATGGCAATCACCAA CATCGTCAGTGCTATCATCATCTTCTACGCCAATATCTCTGTGGTCCACATAA
Protein sequence (LotjaGi2g1v0367800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRMDLFCSSPASTAVTSSFVLHRSRSTKTYDHDRRKTQLHVPCSSQLPINPKPYFEKHRKSTSSDNKQHNSETRRKSSV EVNDLYTQYPITTDSSSRRHLLGDVPLIDWVSESKKITTMASSPHGAKAKPMVLTRNDSSSAHSKDQVVVLRVSLHCKAC VGKVRKHISKMEGVTSFNIDMVTKKVTIIGDVSPLDVVASVSKVKKAQLWQSPTSSVLSSSSTPISLWST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 224 | 224 | 3.2E-70 | – | |
| SignalP_GRAM_POSITIVE | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 224 | 224 | 3.2E-70 | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 6 | 16 | 11 | - | – | |
| Phobius | 17 | 24 | 8 | - | – | |
| Phobius | 25 | 230 | 206 | - | – | |
| MobiDBLite | 26 | 40 | 15 | - | – | |
| MobiDBLite | 26 | 81 | 56 | - | – | |
| MobiDBLite | 54 | 80 | 27 | - | – | |
| Gene3D | 144 | 208 | 65 | 1.0E-14 | – | |
| ProSiteProfiles | 147 | 207 | 61 | 10.988 | ||
| SUPERFAMILY | 147 | 206 | 60 | 1.09E-13 | ||
| CDD | 150 | 206 | 57 | 1.81004E-11 | ||
| Pfam | 151 | 203 | 53 | 2.0E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi2g1v0367800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…