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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0368200 |
| Transcript ID | LotjaGi2g1v0368200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dirigent protein; TAIR: AT1G07730.2 Disease resistance-responsive (dirigent-like protein) family protein; Swiss-Prot: sp|Q9LQQ0|DIR25_ARATH Dirigent protein 25; TrEMBL-Plants: tr|I3TAN9|I3TAN9_LOTJA Dirigent protein; Found in the gene: LotjaGi2g1v0368200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86574902..86576207) extracted from Lotus japonicus Gifu genome v1.2.
CATAACCCTTTATCATCTCATCTCATCTAATCAAAGTACAATTTGGATTGGAACTATCAAACACTAGAATTTCCATGGCA AGCATTGAAACTCATTCTACGACCATGCCCCTGAAAGCCATAACCTTCTTAGCATTGATATTCCTTGCATTCACTTCCAC CGCTTCAACTCGAATCCTCACTGGTCTAGAAACACCCACCACCACAGCACCAGAAGAATTACCTGACTTTGCTGGATCCC CTGTCTCTTCCACTGTCCCTCCTCTGGTAACAGCTGCTACCCCTGCTGCAGCCATTGATGGAGAGTATCATCACCACACA CTCTCATTTTTCATGCATGACATTCTCGGTGGATCGAACCCAACAGCGAGAGCAGTGACAGGGGTGGTTACAAATCCTGC TGTAAACGCTCAAGTTGCGTTTGCCAAGCCCAACGGTGCAAACCTTCCTCTCAACAATGGTGTTCCCCAGAACAACAACA ACGCTGGAATTCTCAACAACAACGACCTTCCTTTCATCACCGGACTGAGTGGAACCACTGGGAATGTTTTCAACAACAAC AACAACAATGGAAATGGGAATGGTTTTTCAGTGACGAATCCGAATAACCTCCCAGCAGGCCTTACCCTGCAGAAGTTGAT GTTTGGGACAATGACAGTGTTTGATGATGAATTGACAGAAGGGCATGAATTGGGATCAGGAATGGTGGGGAAAGCACAGG GATTTTACATAGCAAGCTCAGTGGACGGAACAAGCCAGGTGATGGCTTTCACTGCAAAGTTTGAGGAGAATGGTTATGTG GATAGTCTCAGCTTCTTTGGTGTCCACGGAACACAAGTCTCAGAATCACAACTTGCAATCATTGGTGGCACTGGAAAGTA TGTGAATGCTGAGGGCTTTGCTATTATTAAGACGTTTCCTGTTACCAATGATCAGCAACATCACACTGATGGACTCGAGA CTCTCTTGCAACTCACTGCCTATCTTGCATAGCTAAATAGGGTGTCTTAGTGTCTTGCTCTTTTATTCCATGAATCGAAA CTATTGCACTTGTATTTCGTGTGATGAATCTCATTATGTGTTGTACTATTGTAACAGGAAGTGGAAATGTTATGCTTGAA TTTGAGTCTGCCAAAAAAAATTGAGTTTATTGTTTTGGTTTTTGCATTTACTTTTGTCCTTTGAATCCCACCATTCTAAA TCTTTGTTGTATATCTGGCTTGGTCTGTAGCTACCCTTTTTATTTCTATCATGCATGCGTATAAGATCAAATTTTGCTTG ATCTTAGTTAGCTTTTTGGATTAGAT
CDS sequence (LotjaGi2g1v0368200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAGCATTGAAACTCATTCTACGACCATGCCCCTGAAAGCCATAACCTTCTTAGCATTGATATTCCTTGCATTCAC TTCCACCGCTTCAACTCGAATCCTCACTGGTCTAGAAACACCCACCACCACAGCACCAGAAGAATTACCTGACTTTGCTG GATCCCCTGTCTCTTCCACTGTCCCTCCTCTGGTAACAGCTGCTACCCCTGCTGCAGCCATTGATGGAGAGTATCATCAC CACACACTCTCATTTTTCATGCATGACATTCTCGGTGGATCGAACCCAACAGCGAGAGCAGTGACAGGGGTGGTTACAAA TCCTGCTGTAAACGCTCAAGTTGCGTTTGCCAAGCCCAACGGTGCAAACCTTCCTCTCAACAATGGTGTTCCCCAGAACA ACAACAACGCTGGAATTCTCAACAACAACGACCTTCCTTTCATCACCGGACTGAGTGGAACCACTGGGAATGTTTTCAAC AACAACAACAACAATGGAAATGGGAATGGTTTTTCAGTGACGAATCCGAATAACCTCCCAGCAGGCCTTACCCTGCAGAA GTTGATGTTTGGGACAATGACAGTGTTTGATGATGAATTGACAGAAGGGCATGAATTGGGATCAGGAATGGTGGGGAAAG CACAGGGATTTTACATAGCAAGCTCAGTGGACGGAACAAGCCAGGTGATGGCTTTCACTGCAAAGTTTGAGGAGAATGGT TATGTGGATAGTCTCAGCTTCTTTGGTGTCCACGGAACACAAGTCTCAGAATCACAACTTGCAATCATTGGTGGCACTGG AAAGTATGTGAATGCTGAGGGCTTTGCTATTATTAAGACGTTTCCTGTTACCAATGATCAGCAACATCACACTGATGGAC TCGAGACTCTCTTGCAACTCACTGCCTATCTTGCATAG
Protein sequence (LotjaGi2g1v0368200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASIETHSTTMPLKAITFLALIFLAFTSTASTRILTGLETPTTTAPEELPDFAGSPVSSTVPPLVTAATPAAAIDGEYHH HTLSFFMHDILGGSNPTARAVTGVVTNPAVNAQVAFAKPNGANLPLNNGVPQNNNNAGILNNNDLPFITGLSGTTGNVFN NNNNNGNGNGFSVTNPNNLPAGLTLQKLMFGTMTVFDDELTEGHELGSGMVGKAQGFYIASSVDGTSQVMAFTAKFEENG YVDSLSFFGVHGTQVSESQLAIIGGTGKYVNAEGFAIIKTFPVTNDQQHHTDGLETLLQLTAYLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 14 | 14 | - | – | |
| PANTHER | 8 | 305 | 298 | 2.5E-130 | – | |
| PANTHER | 8 | 305 | 298 | 2.5E-130 | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 15 | 26 | 12 | - | – | |
| Phobius | 27 | 30 | 4 | - | – | |
| Phobius | 31 | 305 | 275 | - | – | |
| Pfam | 159 | 286 | 128 | 9.9E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0368200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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