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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0369300 |
| Transcript ID | LotjaGi2g1v0369300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein, putative; TAIR: AT1G78760.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9ZV94|FDL11_ARATH Putative F-box/FBD/LRR-repeat protein At1g78760; TrEMBL-Plants: tr|G7JSX5|G7JSX5_MEDTR F-box/RNI superfamily protein; Found in the gene: LotjaGi2g1v0369300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86662496..86666715) extracted from Lotus japonicus Gifu genome v1.2.
GGTGGGGTGCCAAACCAAATTCCCCTCAACTCTTCACTCCATCTTTCTCCAGCGGCAACAAGCTAGGGTTTATGCTCCCA CCTGCATCCTTCTCAATCCTCCTCAGGTATTTGAATTTCTCCTTTCCCGATTCAATTTCATTTTCCATTTTTCCTGTATC ATCGTCTTCGCTGATTCATACATAGGGTTCTTTCTAGGTTTTTTCGTTTTTCCCCAAATGCAATCGAACACGACGTTGCT TCGTTTTGAAAATCCACTGTATAATTGCACAAGAGTCATTTTAATTTTAATTTTTGTTGCCTTTTCATGCATCGGTACTT TTCTGAATACCTGATTCAACGGTTGAGAAGATGTTGATTCCTGTGAAGCGAAAAAGGCGTAGCGAGACTGCAAATGAAGA GAACACTGGTTCAATCGTTGAGATGTTGACTCCGCCGAAGCCAAAGCGAGGAAGTGAAAATGTAGTGAACAAAGACAGGC TCAGTGATTTGCCCGATTGCCTTCTCCTTCACATTATGTCATTTATGAAAGCCAAATGCGCGGTTCAGACTTGCGTATTA TCCACAAGATGGAAGGATCTCTGGAAATGTGTTCCTTCGATCACATTACTTTCGCCGGACTTTGTGAGATTGAAGAGTTT CACTGATTTCATGAATAAGCTTTTGGACCTTCGCGATCGCTCGGCTGCACTGCACAGCTTTGATTTTGAGCGTCGTGGCT CTATGGAGTTTCGCTACCACAAAAGGGTCGTCAGCTATGTTTTGTCACATAAAGTTCAGCAATTACGATTTGCTGTGGTA TATAACCTGTCTCAGATCCTTCGCATTTTTTCATGCCAGTCTTTAACATCTCTGGAGCTTTTAGTTCACACTGGGCGGTC TAATCCTTCTGGCAATTTATTTCCGGTATCTTCATGTCTCAATTTGCCAGCATTAACCAGCTTGCATCTGGGTTGTTTCA CCTTCTCCGGGGGCATCAATCGCCGAGCCGAGCCCTTTTCGGCTTTTAAGAAGTTGCATAGTTTGATCATTGACAATTGT AGCATAAAGGATGCACAAACCTTCTGCATATCAAGTACAACACTTGTTGATGTTACTATTATACATACTTTGTATGGGGA CTTTAAAGAAGTTGAGCTCTCTGCACCAAGTCTTCATAGGTTGGATTTTACGGGCTCCACTCCTCGTCAGCGGCTCTGTG GGAGTAGTCTTTCTTCTGTGAAAGAATTAAGTATCGATGTAGACATGCGAGCATATGCCCCAGAGCCTCCTTTGATTCTA CTCAGCTGGCTGGAAGAGCTTACTAATATCAAATCATTGACAGTCTCTACAAGTACTCTTCAGGTGCCTTGGCATCCTTT GAGCCTATTTTTACAATTTTACTTACTTCTTAAGATGCTTTTTAATTTCAATTTTTTGTAAAAAATCAGTCTACTTGCAT TAAATCATTCCTAATTCACCCTCATTCTCATTGCTTAGGTTCTCTTCTTAATCCCCAATTTAGTAAAGCGTAAGCTCGCG TTCTTGTGTCACTTGAAGTCATTGAAAGTTAAAGTGGAACGGTTTACATCATTGCTTAGAACAGCTATGATAGATGTGAA GATACAGAAAGCCGCTACTGTGTCACAGAGAGAAGCTGCCAGGTTACATAAAGAAGCTGATATCATAGAGAAAACAAAAT CAGAGCATGCACCGATACCTGCTGGAATACTGAACTTTTTGCTTCAAAACTCACCCTCAGCAGAAGTTAAGACCAAAAGC TGCTATAGGTAAAATTGGCATTCAACTTGTTAGAGAGAGATTCTTATAATTTGTTTTGTTTTTGCTTCCTTCTCTATTGT TCTTTGCTCAGTCTCTTTGCTTCTAAGTTATAACTAATTATTGGTGTATAATTATGAAACCCTTGGGTAGTGAAACAAAT TGTAAATGTGCAATAACGTGATTGTATCCTATCTCACAACTTAAGTGGGTGCTCTGTAGCTTGGATAGGGTAATGTCATT GCTTGAGTTGAATGAAACAAAGTTTGTAGTGGTTCAGGAAAAATCCCTATTTTGAGGGATAAGAACGTTGATGTGAAAAA AGGAAGAAAGTGAGAACTTATTCTTAGATGTTGAAGAAGTGTGAAAAGTAGAACCTTTTGGTGCATTAAACTTTCACAAA AATGAAGTGCAAGTTATGGAAAATATGTCACTCAGTAAATCAGAGGCCAATTGTCTCTCAACTCTAGTCACCCATCCTCC CGTTCCCTTCTTTATCAAAACTATTAGTGTTGTGCATCAGTGACCAACACATTAGATAATATAGAATAGAACTAAAAGTT TCACTGTGACTTAGTTAATCATATGGTGTTGTTCTGCTTTTGACCTGTCACACATAAACACACCCTTTGTGCATTTGCCT GGGTGCATCAAATGCATAATAGCTTAAAAACCAAATATATATTTGATCAGGTGCATCTTGAAGAGCAGGATTGGTGACGG TAAGTGGGAAGCAGGTAAACTTGAATTTAAGTTAAAGTTGAAAAGGGCTTTTCTTTGCATATTGCTAGTTGTTGTGCTGT TTGTTGTTTTGTTAGCAAGTCGTTCTAATCGTATTTTAAAATAAGGCTATATATTATTCATTTTAGTTACTTATGTGTTT CCTTTGTTTTAGTTGTGTGACAATTTTAAATATGCCTAGAGTCTGTTTGGCATTTGGTTAGATTAAGGATGATCACCCAC TAAAACATCCCGATCACTCAATAGGTTTTTTTTCAGAATATCAGAAGTAAGATGAACCTGGGTGTAAATATCCAGTTCAC AAAAATGTTTGGTTGATACTCCATTTCCACTTATGCTGTGAATGAATCAAAACCCTTATTTACTTGCTGGTGGTAAGGTC ATGAGATTGTAACTTATGATCTTTGGCAAAGGAAATACTGTAGTTTTTTTTTGCTCAGATTTCTTACTGTTTGGTTGTCT TTTCATAATGCAAAGGCCAGATATTTACACACTAAATTTCATAGAAAGTATCGTCTCTCAGCTCCTTCTTTATTACCTTT CCTTTTTTATTCCAGGAGGATTTATGGCATGTTGTAAGGGACTAAAGTTATATGGAGGTACACGAGATTGAGTCTCATAT ATTGCTGATGGAGTCTTCAATTTGAATAGCTTAATTCAAACGTAGAGATCGAACAACTTGATAGCAGTAGCTCATGCTAA TTTCTAATGTACAAATACCCTGCCTTTTGTAGAAAGGTGGGCTTGTCTCTTGATGAACAGGTATCTTTTATTTTTTGGGA GCCTTCATGAATCAAAGCATTTTTACTTGACATGTTTGGTTTTTTAACATGGAAGTCTAATCGTGATTATCACAATTGAG AAAAGTTAAATTGTAACTTTCAGTTCAAAAATGACTATGCACTCTACCGTGATATTTCACTCTATTCCCAAATATGTTAT AGTCGATAATATTCTCATGAAACTACTTCGACCAACATGTGCATAAGGTACAATCCTATATACTTCTTTCACCAATTTTG TATCATACTTCTTTCGCCTATAAACATTTTTCTCAAACAAAATTAAGTATAAGAGACAACTAATTAGTTATTTGTGAACA AATGCATCTGCTTTCAAATGCTCTGTTTGTCCAGAATGATAGAAATAGAAGAGAAAGAATGATGTAAATACACTATCTTC ACCCGCTTGGTAGAATAGAGTATGAAAAGAAAGATGATTACTTTTATGCAAAAAGACATATTTACCCTAGATATAAAAAT ATTGTAAATTTATTATTAATCGAGGTAGGGGGCGATTCTCATCCGGAAGAGCACTAGTTTACAGGGATGATGGAGGTTAC AGGGGTGAACGAGCCAGAGGACGTGCAAACTATGGAAATGGCCGAAGCTATGGTCGTGGTGATTTTAATGGCAGGGGGAA TTTGGCTTTAGGAATGGCCCTCGAGGAGGTTTTTCTAGCCGTGGAGGTGATGGGTATCAGAGAAGTGAACAGATGGGAGC TGGCGGTGGCCGCATGAATCGTGTGCCGTGTGCCTGCTGTTAATTCAACGGCCAAAACTACAGCTGTTCGTGTTCGTGTG TCTGCTTGAGAAACTACTCTTCATTGAGGCAGTCAGACTAATAGAAACTGTGGTTGAATTTGCAGTAATTGAGGCAGTTA GAAAGATTTAGAGGAGCCTTTTTTTTGACAAGTTTATAAGGTTCTAATTTTTTGTCGTTC
CDS sequence (LotjaGi2g1v0369300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGATTCCTGTGAAGCGAAAAAGGCGTAGCGAGACTGCAAATGAAGAGAACACTGGTTCAATCGTTGAGATGTTGAC TCCGCCGAAGCCAAAGCGAGGAAGTGAAAATGTAGTGAACAAAGACAGGCTCAGTGATTTGCCCGATTGCCTTCTCCTTC ACATTATGTCATTTATGAAAGCCAAATGCGCGGTTCAGACTTGCGTATTATCCACAAGATGGAAGGATCTCTGGAAATGT GTTCCTTCGATCACATTACTTTCGCCGGACTTTGTGAGATTGAAGAGTTTCACTGATTTCATGAATAAGCTTTTGGACCT TCGCGATCGCTCGGCTGCACTGCACAGCTTTGATTTTGAGCGTCGTGGCTCTATGGAGTTTCGCTACCACAAAAGGGTCG TCAGCTATGTTTTGTCACATAAAGTTCAGCAATTACGATTTGCTGTGGTATATAACCTGTCTCAGATCCTTCGCATTTTT TCATGCCAGTCTTTAACATCTCTGGAGCTTTTAGTTCACACTGGGCGGTCTAATCCTTCTGGCAATTTATTTCCGGTATC TTCATGTCTCAATTTGCCAGCATTAACCAGCTTGCATCTGGGTTGTTTCACCTTCTCCGGGGGCATCAATCGCCGAGCCG AGCCCTTTTCGGCTTTTAAGAAGTTGCATAGTTTGATCATTGACAATTGTAGCATAAAGGATGCACAAACCTTCTGCATA TCAAGTACAACACTTGTTGATGTTACTATTATACATACTTTGTATGGGGACTTTAAAGAAGTTGAGCTCTCTGCACCAAG TCTTCATAGGTTGGATTTTACGGGCTCCACTCCTCGTCAGCGGCTCTGTGGGAGTAGTCTTTCTTCTGTGAAAGAATTAA GTATCGATGTAGACATGCGAGCATATGCCCCAGAGCCTCCTTTGATTCTACTCAGCTGGCTGGAAGAGCTTACTAATATC AAATCATTGACAGTCTCTACAAGTACTCTTCAGGTTCTCTTCTTAATCCCCAATTTAGTAAAGCGTAAGCTCGCGTTCTT GTGTCACTTGAAGTCATTGAAAGTTAAAGTGGAACGGTTTACATCATTGCTTAGAACAGCTATGATAGATGTGAAGATAC AGAAAGCCGCTACTGTGTCACAGAGAGAAGCTGCCAGGTTACATAAAGAAGCTGATATCATAGAGAAAACAAAATCAGAG CATGCACCGATACCTGCTGGAATACTGAACTTTTTGCTTCAAAACTCACCCTCAGCAGAAGTTAAGACCAAAAGCTGCTA TAGGAGGATTTATGGCATGTTGTAA
Protein sequence (LotjaGi2g1v0369300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLIPVKRKRRSETANEENTGSIVEMLTPPKPKRGSENVVNKDRLSDLPDCLLLHIMSFMKAKCAVQTCVLSTRWKDLWKC VPSITLLSPDFVRLKSFTDFMNKLLDLRDRSAALHSFDFERRGSMEFRYHKRVVSYVLSHKVQQLRFAVVYNLSQILRIF SCQSLTSLELLVHTGRSNPSGNLFPVSSCLNLPALTSLHLGCFTFSGGINRRAEPFSAFKKLHSLIIDNCSIKDAQTFCI SSTTLVDVTIIHTLYGDFKEVELSAPSLHRLDFTGSTPRQRLCGSSLSSVKELSIDVDMRAYAPEPPLILLSWLEELTNI KSLTVSTSTLQVLFLIPNLVKRKLAFLCHLKSLKVKVERFTSLLRTAMIDVKIQKAATVSQREAARLHKEADIIEKTKSE HAPIPAGILNFLLQNSPSAEVKTKSCYRRIYGML
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 38 | 38 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| SUPERFAMILY | 33 | 92 | 60 | 2.62E-9 | ||
| Gene3D | 38 | 387 | 350 | 2.8E-17 | ||
| PANTHER | 39 | 422 | 384 | 4.6E-78 | – | |
| PANTHER | 39 | 422 | 384 | 4.6E-78 | – | |
| Pfam | 43 | 79 | 37 | 8.1E-5 | ||
| SUPERFAMILY | 152 | 353 | 202 | 1.16E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0369300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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