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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0369500 |
| Transcript ID | LotjaGi2g1v0369500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Harbinger transposase-derived nuclease; TAIR: AT3G55350.1 PIF / Ping-Pong family of plant transposase; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A0B2RMS4|A0A0B2RMS4_GLYSO Putative nuclease HARBI1; Found in the gene: LotjaGi2g1v0369500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86681453..86683824) extracted from Lotus japonicus Gifu genome v1.2.
AGAATTTTTAATTAATTTTAAAAGAAAAATCAATTCTCTGAAGAAGCTTATGTGAATACTCATCCAAACATACTATCATT GGATATGCCATGGGGTGAATTCAATGACTTAGAACTTTGCTTAACATTACCTATTTATTTTCCGTTTCTTCTTTACCTGC ATGCTATAGTGTTCAAACAAACGCCTCACTCACACACAAACATTGACACAACTATGTAAAAAGTAAGTTACTGTTATCTG AACTTGTTGGCATGCCACTCACTGCTCATGATTCTTTGAGGTTCATTTTGTGGCTTTATAGGTTATAATGTCATGATAAA TAAAAAATTGTTTTTATTTTTCTTACCTTGTGCATTGTTGATTCAATTTGCATGTAGTTGTAGATGATGGCTCGTGTTAA AGGACAGAGAAAGCCAATAAAGCACCAGGCTGCTGCTTCTGCTGCTTTTGGGTGGGGTCAGGAGGGGCCTCTGGATTGGT CGGATGAGTTCTCAGAGAAGATTAATGGTAGATGTTGTTTTTCAGCTTCACTGTTTTTAATTCATGTGATGCTTAGCTTG TTTCTTATATATGTTTGATGTAGTTTTTACTTATGAATCCTGGTCTGTTCGATTTTTACATGATTGAAGTCTCTGTCATT GAAATTTTATACATGCTGAATCATGCCAATACACTGTGTTATAAAATCTGAGGATCCTTAATTTGACTCTGGAGTTGAAT GCCATTATGATCATGTTATCTTATCAATTAAGAAATGCTTAATTAATCACATAAGTATAATTGCTCTACTGTGAAACCTA AATTGGTTCTTGTATCTTAAGCTGCAGTAGTTTTTTTCATATTAATTAGTGTATAAATCTATTACGTTTCATGAATCTTA GTTTTAGGTGATTTTGTTCATTTGGCGTGCATCTATTTGATTATATGTACTGAGGTATTGCTTGACTAACACAAACTCAC CCAGGTATTGTATATACTATATACTGATGTGTCTGTCACTTTTTTCTGGGTTTTTCCCAGACAAAGTCAAATCTAATCTT TATATTTTCATTTGTTCATATATGTGTTTGTTTCTATCATGAAAAGAAATTTCACCAACTACCATTGCTAATTTTACATT TTGTGGTGCTTGGTAGGTCGTCATCAGAACACTCCTACATCTGTTTTCAAGATCACCAAAAGTATGTTTGAATACATATG TTCACTTGTTGAAGAAGACATGATGGAGAAACCTCCACATTTGGCATTCACCAATGGCCAACCAGTGTCTTTGCATGATC AAGTAGCTGTGGCGTTGAGAAGACTTGGATCCGGCGACTCACTGGTCCTTATCGGCGGTATATTTGGGGTAAGCAACACT ATGGTTTCACAAATCACCTGGAAATTTGTGGAATCCATGGAAAATAGAGGGCTCCTCCACCTGAAATGGCCACCCACTGA GCGCGAACTGATTGAAATTAAATCCAAGTTTGGGAAACTACAAAGCCTCCCTAACTGTTGCGGTGTAGTTGATGTCACAC ACATCAACATGTGTTTAGCTTCCACAGAGCCTAATAAAGATGTGTGGCTTGACCATGAGAATAAACATAGCATGGTCTTG CAAGCAATAGTGGATCCTGATATGAGGTTCAGAGACATAGTCACTGGTTGGCCAGGTCAAATGAAGGATTGGATGGTCTT TGAGGATTCAACTTTCCACAAACTTTGTGATGAAGGAGAGAGGTTGAATGGGAATATTATTCGTCTCCCTGATGGATCAG AAATAAGGGAATACATAATTGGTGATTCAGGCTATCCTCTACTTCCATACCTCATTGTCCCATATAAAGGGGAAGAACAA GAACTCTCAGTTTCACAAGCTAATTTTAACAGGAGGCATCTCGAAACGCGGATGGTGGCGAAGCGGGCACTGGTGATGCT GAAGGAGATGTGGGGAATCATTCAGGGAACTATGTGGAGGCCTAACAAACATAGGTTGTCAAAGGTTATCCTTGTTTGCT GCATACTTCACAACATAGTGATTGATATGGGAGATAGAGTGCAGAATGAACAACTATCTAATTTGCCTACCAATCATGAC CCAGGTTACCATCAACTGATTTGTGAAGCAGAAGACCCCCAGGGAGTGTTATTGAGGGAAAATGTGTCTCGCTACTTGTC TCAAGGGATGGCTCCATGATATGTTATTTGTCCATTGTTAGTGCTTGGTTGCTCAGAGATTTGAATTCCTGAAAGTTTTT TTTGGTTCTCATAAAACAATTGTTGCTGCTTCTGATTTATACTGTCAGTACTTAAAATGGTACTTTTTGTTGGGTGAACT TTGCAAGTTTATCAAACTATGATTGAGGATTATGCAGGTTATATTTGTTAGT
CDS sequence (LotjaGi2g1v0369500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGCTCGTGTTAAAGGACAGAGAAAGCCAATAAAGCACCAGGCTGCTGCTTCTGCTGCTTTTGGGTGGGGTCAGGA GGGGCCTCTGGATTGGTCGGATGAGTTCTCAGAGAAGATTAATGGTCGTCATCAGAACACTCCTACATCTGTTTTCAAGA TCACCAAAAGTATGTTTGAATACATATGTTCACTTGTTGAAGAAGACATGATGGAGAAACCTCCACATTTGGCATTCACC AATGGCCAACCAGTGTCTTTGCATGATCAAGTAGCTGTGGCGTTGAGAAGACTTGGATCCGGCGACTCACTGGTCCTTAT CGGCGGTATATTTGGGGTAAGCAACACTATGGTTTCACAAATCACCTGGAAATTTGTGGAATCCATGGAAAATAGAGGGC TCCTCCACCTGAAATGGCCACCCACTGAGCGCGAACTGATTGAAATTAAATCCAAGTTTGGGAAACTACAAAGCCTCCCT AACTGTTGCGGTGTAGTTGATGTCACACACATCAACATGTGTTTAGCTTCCACAGAGCCTAATAAAGATGTGTGGCTTGA CCATGAGAATAAACATAGCATGGTCTTGCAAGCAATAGTGGATCCTGATATGAGGTTCAGAGACATAGTCACTGGTTGGC CAGGTCAAATGAAGGATTGGATGGTCTTTGAGGATTCAACTTTCCACAAACTTTGTGATGAAGGAGAGAGGTTGAATGGG AATATTATTCGTCTCCCTGATGGATCAGAAATAAGGGAATACATAATTGGTGATTCAGGCTATCCTCTACTTCCATACCT CATTGTCCCATATAAAGGGGAAGAACAAGAACTCTCAGTTTCACAAGCTAATTTTAACAGGAGGCATCTCGAAACGCGGA TGGTGGCGAAGCGGGCACTGGTGATGCTGAAGGAGATGTGGGGAATCATTCAGGGAACTATGTGGAGGCCTAACAAACAT AGGTTGTCAAAGGTTATCCTTGTTTGCTGCATACTTCACAACATAGTGATTGATATGGGAGATAGAGTGCAGAATGAACA ACTATCTAATTTGCCTACCAATCATGACCCAGGTTACCATCAACTGATTTGTGAAGCAGAAGACCCCCAGGGAGTGTTAT TGAGGGAAAATGTGTCTCGCTACTTGTCTCAAGGGATGGCTCCATGA
Protein sequence (LotjaGi2g1v0369500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMARVKGQRKPIKHQAAASAAFGWGQEGPLDWSDEFSEKINGRHQNTPTSVFKITKSMFEYICSLVEEDMMEKPPHLAFT NGQPVSLHDQVAVALRRLGSGDSLVLIGGIFGVSNTMVSQITWKFVESMENRGLLHLKWPPTERELIEIKSKFGKLQSLP NCCGVVDVTHINMCLASTEPNKDVWLDHENKHSMVLQAIVDPDMRFRDIVTGWPGQMKDWMVFEDSTFHKLCDEGERLNG NIIRLPDGSEIREYIIGDSGYPLLPYLIVPYKGEEQELSVSQANFNRRHLETRMVAKRALVMLKEMWGIIQGTMWRPNKH RLSKVILVCCILHNIVIDMGDRVQNEQLSNLPTNHDPGYHQLICEAEDPQGVLLRENVSRYLSQGMAP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 385 | 382 | 2.6E-167 | – | |
| PANTHER | 4 | 385 | 382 | 2.6E-167 | – | |
| Pfam | 166 | 334 | 169 | 1.1E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0369500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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