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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0371200 |
| Transcript ID | LotjaGi2g1v0371200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT5G53370.1 pectin methylesterase PCR fragment F; Swiss-Prot: sp|Q9FK05|PME61_ARATH Probable pectinesterase/pectinesterase inhibitor 61; TrEMBL-Plants: tr|A0A0B2SIH5|A0A0B2SIH5_GLYSO Pectinesterase; Found in the gene: LotjaGi2g1v0371200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86791318..86792970) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTCATAGGGGATGGGAAGGGCAAAACTGTCATCACAGGGAAGAAAAATGTTGTTGATGGGATGACCACTTTCCATAC CGCATCCTTCGGTGAGTTTCTTTCCACATGTCACGTGTGCCAACTTGTTTCTTTAGAAATTCATTATTTTATGTCTTTAT TGCACAAAATTCATCGTATGGTTCTATTTTTTTTGTTAATTTAGCATTTTGGAAAATAAATAATGAAGAAAAACAGTGGA CCAACACCATGTCCATGCATGATATTAGAACAGCGTAAGTTGCACATGGCCTGCAATCACATGATAGATATTACAACTAT TAAGATTGTGATATGCATGTCTTCAATTGATGCATTATTGTGCCGCATAATGCGCTTTACCAGCATTTTCTGTACTAACC TGGAACTCACGAAATCAAAAAGTACAATATACTGAACTTTACCATGCACCTCAAGTCAACCCAAAAGCGGAAAAATTATA GTTTTCTAATTAATTTAACAAGATAACTGCAGATTAAGCCATATACTTTTCTACAGACTCTAAATTCACTTCTTATGAAC TATTTTATTTTATTATTTTTTGAGATATAATTGACCAGAGAAAAATCATAGTAATTGGTTGTTGGAATTCTAAGGAAATT AAACCAGGCCCGAGCAGTCAACACAGTCTTAATTTCTAGTTAAATTATACTTCAATTAATTAATTAAGTGTGCCATCTCC TTACGCGTTCTCTGGCTTTGACAAAACAAATGATCATTCCCTTCTTGACTTTTCATTTTCGTCATACTATAATATACTAC TACTCAAATTAAAAATCCAATATAATTACTCCTATAAGATGCGACTAAATCACGCAATATAAGGAGCCATAATAGTTATC AACAATACCATAAATATTCTTCATGTCCATGATTCGATTTAGCTAACACATGCATGATATTATTAATGGATGCAGCTGCA AGTGGTGCTGGCTTCATTGCACGAGACATCACGTTCGAGAACTATGCTGGACCGGCGAAGCACCAAGCGGTTGCGCTCCG TGTCGGAGCTGACCATGCAGTGGTATTCCGGTGCAACATTGTGGGGTACCAAGACTCATGCTATGTACACTCCAACCGTC AATTCTTCCGTGAATGTGACATTTATGGCACGGTGGACTTCATTTTCGGCAACGCCGCCGTGGTTTTCCAAAAATGCAAC ATTTACGCACGGAAGCCCATGGCCCAACAAAAAAACACAATCACGGCCCAAAACAGAAAAGACCCAAATCAAAATACGGG TATTTCAATCCACAACTGTCGGATCCTACCCGCCCCGGATCTCAACCCGGTAAAGGACCAGTTTCCCACATACCTAGGTC GTCCTTGGAAAACATACTCTAGAACGGTGTACATGTTATCCAACATGAGTGATCATGTGCATCCACGTGGATGGCTAGAG TGGAATGGAGACTTTGCTTTAGACACGTTGTATTATGGTGAGTACATGAATTATGGACCCGGTGCTGCAATCGGGCAACG GGTTAAATGGCCCGGGTACCGGATTATTACTTCAACTGTTGAGGCTGATAGGTTCACGGTGGCCCAATTCATATCCGGAT CCTCATGGTTACCGTCCACAGGAGTGGCCTATTTGGCCGGGTTATCCACATAA
CDS sequence (LotjaGi2g1v0371200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCATAGGGGATGGGAAGGGCAAAACTGTCATCACAGGGAAGAAAAATGTTGTTGATGGGATGACCACTTTCCATAC CGCATCCTTCGCTGCAAGTGGTGCTGGCTTCATTGCACGAGACATCACGTTCGAGAACTATGCTGGACCGGCGAAGCACC AAGCGGTTGCGCTCCGTGTCGGAGCTGACCATGCAGTGGTATTCCGGTGCAACATTGTGGGGTACCAAGACTCATGCTAT GTACACTCCAACCGTCAATTCTTCCGTGAATGTGACATTTATGGCACGGTGGACTTCATTTTCGGCAACGCCGCCGTGGT TTTCCAAAAATGCAACATTTACGCACGGAAGCCCATGGCCCAACAAAAAAACACAATCACGGCCCAAAACAGAAAAGACC CAAATCAAAATACGGGTATTTCAATCCACAACTGTCGGATCCTACCCGCCCCGGATCTCAACCCGGTAAAGGACCAGTTT CCCACATACCTAGGTCGTCCTTGGAAAACATACTCTAGAACGGTGTACATGTTATCCAACATGAGTGATCATGTGCATCC ACGTGGATGGCTAGAGTGGAATGGAGACTTTGCTTTAGACACGTTGTATTATGGTGAGTACATGAATTATGGACCCGGTG CTGCAATCGGGCAACGGGTTAAATGGCCCGGGTACCGGATTATTACTTCAACTGTTGAGGCTGATAGGTTCACGGTGGCC CAATTCATATCCGGATCCTCATGGTTACCGTCCACAGGAGTGGCCTATTTGGCCGGGTTATCCACATAA
Protein sequence (LotjaGi2g1v0371200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFIGDGKGKTVITGKKNVVDGMTTFHTASFAASGAGFIARDITFENYAGPAKHQAVALRVGADHAVVFRCNIVGYQDSCY VHSNRQFFRECDIYGTVDFIFGNAAVVFQKCNIYARKPMAQQKNTITAQNRKDPNQNTGISIHNCRILPAPDLNPVKDQF PTYLGRPWKTYSRTVYMLSNMSDHVHPRGWLEWNGDFALDTLYYGEYMNYGPGAAIGQRVKWPGYRIITSTVEADRFTVA QFISGSSWLPSTGVAYLAGLST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 261 | 261 | 1.4E-186 | – | |
| PANTHER | 1 | 261 | 261 | 1.4E-186 | – | |
| Pfam | 1 | 245 | 245 | 5.8E-128 | ||
| SUPERFAMILY | 1 | 259 | 259 | 1.57E-93 | ||
| Gene3D | 1 | 260 | 260 | 4.1E-110 | ||
| ProSitePatterns | 93 | 102 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi2g1v0371200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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