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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0375300 |
| Transcript ID | LotjaGi2g1v0375300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Scarecrow transcription factor family protein; TAIR: AT2G29060.1 GRAS family transcription factor; Swiss-Prot: sp|P0C883|SCL33_ARATH Scarecrow-like protein 33; TrEMBL-Plants: tr|G7JUT6|G7JUT6_MEDTR GRAS family transcription factor; Found in the gene: LotjaGi2g1v0375300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87258280..87261508) extracted from Lotus japonicus Gifu genome v1.2.
GTTGTGACAAACGTCAATCTAAACACTCGCTTAATGTTGTTTGAGAAAAAAAAAGTCTTATTAATATAAACAAGAAATTC ATAAATTAGTCTCTCACAATTATTTTCCACTTAGAGGAAGTTATTGGAAGCCTTCCCGCATCAAGTTGTGTGTACTCACT AAACACTGTTTCTCATCCACTTGTCTTAGTGCAATTAATCATTGTTCTAGATCTGATATATGAAATGTGACGATGGCTTA AAGCATTTCAAGGTACATTGAATCTTATAGGCTGCTATTTTGACTTGTACGTTGAAAAAACTCATTAGAGAGGCTATGTG AAATTGGAGAATGAACTACTGAAGCTTTTAGCTTAGATATCAATTGATCATTTGAAAAATGGTGAAGTTCTTGGAATGTG AAGATGTAATTTCAAGTTATAATCAAAGGTTTTTTTAACGGACTAACTCAAATAAGGAAATGAAGATGGATACAACCTTT TCTGGGGCCAGCGATTTCACAAACGGATACCAGTTTTGTGAAGAAGGGAGCATATTTGACTCGGATCCAAATCCATATGC AGCATACTGGGATGTGTTTCATCAACATGGGAACCTCTTAGATATAGACCCTCTTAGTTTTGCAGCAAATACGAGCTCTG TACAAGGTTCTGTGACATCCATGTCCATAAACTCGGTGACAGATCCTTCTCTAGAAGACACTGACTTCTCAGAAACCACA AAGTTCATAAGCCAAATCCTGATGGAAGAGAACCTTGAACAGGGTCCATTTTATGACTCCTTGAGCCTGCAACTCACAGA GAAATCATTCCATGATGCTCTCATTGACAACAACTCATCTCTTTCGCCCACTCAACACCCCTTAAATGTTCAAAGCCCTT ATGGTGAAACAACTAGCAGTGACAGTGACAACATCAGCAATTTACACTACAATTCTTGTGAGTTGAATCCCCCTCCTCTG GATACCCCCCATGTTGCTGTAATTGGTGATCATGCTTTTCAGCTTAATTCTCATGGCCTGCTAGATTTGGATGCTTCTGT TAACAAACCGTTGGCGCAAAATATTTTCAGTGATGCAGATTTAGTCTCCCAATTCAGGAGAGGGTTAGAAGAAGCTACCA AGTTTCTTCTTCCTCCAGAACCCCGGATTGAGACCGGTCTAGAGTCAAGGGGAGAATCATCCAATATAGTTGAGGAGAAT TCTTTTGGGTTAAAGGGCAGTATAAAGAATCGTGGGCGTGAAGAAAGTGATTCTAATGAAGAAGGGAGAAGTACCAAGAA ATCAGCAGTTGGTGTTGTTGATGACGATGACTTATCTGATGTGTTTGATCGAGTGCTGGTAAATATGGAACAATTGCCAC TTGGTAATGAACACAATTCCCTACAGAGCGGCGCAGCAAAAGAGAAACAGCAAGGTGAAAAGCCAACTTCATCTGATGGA GGGAAGGCTCATCCAAAGAAACAAGGCAGGAAGAAGGAAACGGTGGACGTGAGGGCTCTTCTGCTTCTTTGTGCACAAGC TATTCATACCACTGATAACAGGGCTGCTAATGAACTTCTAAAGCAGATAAGGCAGCACTCTTCTCCCTTTGGTGATGGGT CACAAAGATTGGCTCATTACTTTGCCAATGGCCTTGGGGCACGCTTGGCTGGGGATGTTACCGGTGCACAATTATGTTAT TCTACTCCAACCCACAAGACAACCTCTGCTGATGATTTCTTCAAAGGTTATCAAGTTTATCTATCTCCTAACCCGACCAG AAAGTTTGCACATTTCTATGTTAACAAAATGATTAAGAAAGCATCTGCAAAAGCTGAAACTCTTCATATTATTGATTTTG GTATCTTATATGGCTTGCAGTGGCCATTACTCATCAAGTTTTTATCAGAAAGAGATGGAGGACCTCCCAAGCTGAGGATC ACAGGGATAGAGTTCCCTTTACCTGGCTTTCGCCCCACACAAAGAATCGAGGAGACCGGTCGTCGTTTGGCTAACTATTG CAAGCGTTTCAATGTTCCCTTTGAGTACACTGCCATAGCATCACAGAACTGGGAAACCATTCGAGTTGAAGACCTTAAAC TTAAGAGCAATGAGTTTGTTGTTGTCAACTGCATGATGAGGTTCAAGAATTTGCTGGATGAGACTAGTAAAATGAACAGT CCCAGTCTCCCAGAGATGCTGTTCTGCTTTTGATCAGGAAGATAAATCCAAATATTTTTGCTCAGTCCATCATTAATGGA TCTTTCAGTACCCCTTTCTTTGTCACGCGGTTTAGGGAGGCCTTGTTCCATTTTTCTGCTGTTTTAGACATGCTTGACAC TGTCCTATCCCGGGATAACCAATGGAGGATGATGAATGAGAGTGAGATCATAGGTCGAAACTCTATGAACGTGATAGCAT GTGAAGGTCGGGAGAGGATTGACAGGCCTGAGACATACAAACAGTGGCAGATTAGGAACACAAGGGCTGGTTTCAAGCAG CTTCCTCTGAACCAGAAATTGATGGCCAAGTTTAGGAGCAAGTTAAAGAACTGGCACCCGAATGAGTTTGTGATTGATGA AGACAGCAATTGGATGCTTCAAAGTTGGAAAGGACGCATTTTATCTTGTTCTACCATCTGGGTGCCTGCATAATGAACTT ATCACACACTTGAATGTAAGGTATAACTATCAGTTATGTTTTTTGTGTCACAGTCCTACCAATACTTGATTACTTGAGCT ACTTAAATGGCATCATTGCAATTTCTTTCCATCTAAATTCTAAACCTAACACATGGTTCAGTAGCAGGAACCAGTGATTA TCATCTTCTCATAATGAATTAGAGTGCACTGTAAATTGAGATGATACTGTTCAATTTGGTCCACATAATTTGAATAATTG TTGCAAGATGAGAAGATAATTCAAAGATGATGCAGTAATTTTAAAATGAATTACTAAGGATGATGAATACTCACACTAGC AATTCATGGAATTGGTGCAGAAGCACAATGACGCCGTAGTGCAGCTTAGTGGCGCTTCGCTTCCAAAACACAAGCAACAG CAAGCACATGGCCGGCGTTGAACAGCTGCAAGATCGAAAGCGATTGCAGAAGCTAGGGTTCCGATTGAAGATTCTCACTT CTCCGGTGAAGACACTCCTCCTTCTCTACCCGCTTTCCGTCTTACAAAATTGGGGTTTTGTTTCGAATTCGAATTCAATG GATGGTTAGGAATATTTTGCAATTTAAAT
CDS sequence (LotjaGi2g1v0375300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATGGATACAACCTTTTCTGGGGCCAGCGATTTCACAAACGGATACCAGTTTTGTGAAGAAGGGAGCATATTTGA CTCGGATCCAAATCCATATGCAGCATACTGGGATGTGTTTCATCAACATGGGAACCTCTTAGATATAGACCCTCTTAGTT TTGCAGCAAATACGAGCTCTGTACAAGGTTCTGTGACATCCATGTCCATAAACTCGGTGACAGATCCTTCTCTAGAAGAC ACTGACTTCTCAGAAACCACAAAGTTCATAAGCCAAATCCTGATGGAAGAGAACCTTGAACAGGGTCCATTTTATGACTC CTTGAGCCTGCAACTCACAGAGAAATCATTCCATGATGCTCTCATTGACAACAACTCATCTCTTTCGCCCACTCAACACC CCTTAAATGTTCAAAGCCCTTATGGTGAAACAACTAGCAGTGACAGTGACAACATCAGCAATTTACACTACAATTCTTGT GAGTTGAATCCCCCTCCTCTGGATACCCCCCATGTTGCTGTAATTGGTGATCATGCTTTTCAGCTTAATTCTCATGGCCT GCTAGATTTGGATGCTTCTGTTAACAAACCGTTGGCGCAAAATATTTTCAGTGATGCAGATTTAGTCTCCCAATTCAGGA GAGGGTTAGAAGAAGCTACCAAGTTTCTTCTTCCTCCAGAACCCCGGATTGAGACCGGTCTAGAGTCAAGGGGAGAATCA TCCAATATAGTTGAGGAGAATTCTTTTGGGTTAAAGGGCAGTATAAAGAATCGTGGGCGTGAAGAAAGTGATTCTAATGA AGAAGGGAGAAGTACCAAGAAATCAGCAGTTGGTGTTGTTGATGACGATGACTTATCTGATGTGTTTGATCGAGTGCTGG TAAATATGGAACAATTGCCACTTGGTAATGAACACAATTCCCTACAGAGCGGCGCAGCAAAAGAGAAACAGCAAGGTGAA AAGCCAACTTCATCTGATGGAGGGAAGGCTCATCCAAAGAAACAAGGCAGGAAGAAGGAAACGGTGGACGTGAGGGCTCT TCTGCTTCTTTGTGCACAAGCTATTCATACCACTGATAACAGGGCTGCTAATGAACTTCTAAAGCAGATAAGGCAGCACT CTTCTCCCTTTGGTGATGGGTCACAAAGATTGGCTCATTACTTTGCCAATGGCCTTGGGGCACGCTTGGCTGGGGATGTT ACCGGTGCACAATTATGTTATTCTACTCCAACCCACAAGACAACCTCTGCTGATGATTTCTTCAAAGGTTATCAAGTTTA TCTATCTCCTAACCCGACCAGAAAGTTTGCACATTTCTATGTTAACAAAATGATTAAGAAAGCATCTGCAAAAGCTGAAA CTCTTCATATTATTGATTTTGGTATCTTATATGGCTTGCAGTGGCCATTACTCATCAAGTTTTTATCAGAAAGAGATGGA GGACCTCCCAAGCTGAGGATCACAGGGATAGAGTTCCCTTTACCTGGCTTTCGCCCCACACAAAGAATCGAGGAGACCGG TCGTCGTTTGGCTAACTATTGCAAGCGTTTCAATGTTCCCTTTGAGTACACTGCCATAGCATCACAGAACTGGGAAACCA TTCGAGTTGAAGACCTTAAACTTAAGAGCAATGAGTTTGTTGTTGTCAACTGCATGATGAGGTTCAAGAATTTGCTGGAT GAGACTAGTAAAATGAACAGTCCCAGTCTCCCAGAGATGCTGTTCTGCTTTTGA
Protein sequence (LotjaGi2g1v0375300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKMDTTFSGASDFTNGYQFCEEGSIFDSDPNPYAAYWDVFHQHGNLLDIDPLSFAANTSSVQGSVTSMSINSVTDPSLED TDFSETTKFISQILMEENLEQGPFYDSLSLQLTEKSFHDALIDNNSSLSPTQHPLNVQSPYGETTSSDSDNISNLHYNSC ELNPPPLDTPHVAVIGDHAFQLNSHGLLDLDASVNKPLAQNIFSDADLVSQFRRGLEEATKFLLPPEPRIETGLESRGES SNIVEENSFGLKGSIKNRGREESDSNEEGRSTKKSAVGVVDDDDLSDVFDRVLVNMEQLPLGNEHNSLQSGAAKEKQQGE KPTSSDGGKAHPKKQGRKKETVDVRALLLLCAQAIHTTDNRAANELLKQIRQHSSPFGDGSQRLAHYFANGLGARLAGDV TGAQLCYSTPTHKTTSADDFFKGYQVYLSPNPTRKFAHFYVNKMIKKASAKAETLHIIDFGILYGLQWPLLIKFLSERDG GPPKLRITGIEFPLPGFRPTQRIEETGRRLANYCKRFNVPFEYTAIASQNWETIRVEDLKLKSNEFVVVNCMMRFKNLLD ETSKMNSPSLPEMLFCF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 77 | 568 | 492 | 5.9E-191 | – | |
| PANTHER | 77 | 568 | 492 | 5.9E-191 | – | |
| MobiDBLite | 123 | 152 | 30 | - | – | |
| MobiDBLite | 227 | 279 | 53 | - | – | |
| MobiDBLite | 255 | 279 | 25 | - | – | |
| MobiDBLite | 300 | 318 | 19 | - | – | |
| MobiDBLite | 300 | 339 | 40 | - | – | |
| MobiDBLite | 319 | 339 | 21 | - | – | |
| ProSiteProfiles | 335 | 577 | 243 | 51.888 | ||
| Pfam | 345 | 567 | 223 | 2.0E-61 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0375300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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