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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0375500 |
| Transcript ID | LotjaGi2g1v0375500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Scarecrow transcription factor family protein; TAIR: AT1G07530.1 SCARECROW-like 14; Swiss-Prot: sp|Q9XE58|SCL14_ARATH Scarecrow-like protein 14; TrEMBL-Plants: tr|K7LTB4|K7LTB4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0375500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87285823..87288911) extracted from Lotus japonicus Gifu genome v1.2.
GCTATCAACTTTTCACAACATGGCAAATGCTAAGGGCACTAAAGAGATGGCTGCTGAGTGGCTTCCTAGAACCTTCAATT AGCTCTGTTCTGTTCTGTTGTCTATCACAAAAATAGTTCCCTCTTTTTCCTAAAATTCCTATACTATATAGCAAAGGGAT AACCTCTTCTTCAGGAACCCTCTGCTAGGTACTCCTTACTTCAATTCTCCAATCTCCTAGCTTCTCATAATCTCATCCAC AAAACTTTTTACCTTTGTTACTTTCTAGAAGCTCTGTTAGTTTTTCCCTATTCATTTTTATTGTTTCATATTTGTCCCTT TACAATCTCAAGTATATATCATCATCATTCATAAGAACTAGGGTTCAGTTTGTACCTTTTATTGTTCTTCAGATTTCTGA ATTTTGCTCCTTGTTAAGTTGTTATTACTATTTGATTATTCTAGTAGTCCCTTTGTTCAACATATCATTGGTTCAATTGC TAGATCTGAACCTCTTCTGTGTTTTATGCTAGTTAGGGTTTCCCCCCCCCCCCCCCCTTTTATAGCTGAAATTGAAAAGA AAACCCCAGCTAGATCTCTGTGGAAAAAAGTGTAATTTCTTGTTCAAGTTTTAATCTTTGGTAAGCAACATGATCTCTAT GGATTCCCTTTTGGAAAATTTCCCTGGTTCCCTGAACGGATGCATGTTTGGGAACGGTCCTGTATCTGTGTTTTCAAATC AGAACCCAGGTAGTGGGTTGAATGTGGAAGATTCATCATCCCCTTCAAACCATTCAGAATTGGCTGCTGATTCTGGTCCT TCTGCTGCTGCTGCTGTTGGCACAACCTCAAGCTCAAATGGGGAATCTGGAGAGAGTAGTAAGCATTCCAATCCCATTCT CAGATACATCAGTGACATCCTCATGGATGAAGAAGACGATCTGGAGCGTAAACCCTGCATGTTGCAGGATTGTTTGAGGC TCCAAGCTGCTGAAAAATCATTCTATGATGTGCTCGGTCGAAGCTATCCTTCATCGCCGCACCAAGTCCAGGGTGGTTTC CGTGATGATAACGCTGATCCAGATGATGGTTTTGGTGGGGGAACTACTAGTTCTGAGGGATATAGCAGTAACACCACTGA TACTTCATGTGAGTCTGATTTGGTTAACGGTGCTGGTGATTTCGAGTCTTATTTTCGGCAAAGAGCTCTAGTTGATTCCC CAGGCAATAGCTCTGAGGTTTTGGATGGAGTACCTCTTGATCCATTGAGAGGTACACAACCTGGTGCCCTTTTTTCAAAT GGAGCCTTGGATGTGATTCAATGGAAGGTTAAGCCACAGGTGATTCAAGAGAGTGTGATTCGGGGTTCTGCGGCAACCAA AGGACCAAGGGAGAAGAGAGGTCATCTTATGAATAATTTCTCACATGTGGAAGAGGAGAGAAGCAACAAGCTTTCAGCTG TTTACTCTGATGATTCGGAGCTATCAGAAATGTTTGATGAGGTGCTGCTTTGCAAGGATGGTAAAAGTCCATCTTTTTTT TGTTTTAATCATGAACCATCACAGATTGCTGGCTCAAGAGGATCTAATGGAAAGACATCGCGTTCAAAGAAAGGTTCCAA GAAGGGGACGAGTCCAACTACAACGGTAGATTTATGGACCCTGCTAACTCAATGTGCACAGGCCGTGGCTAGCTATGACC AAAGGAATGCGAGTGAGATACTCAAGCAGATTAGGGACAACTCTTCACCTTTTGGCGATGGACTCCAGCGTTTAGCTCAT TATGTTGCCAATGGGCTGGAGACGCGATTATTTGCTGGGACACCGAAGTATACACTCCTTCAGTCTTCATCTGCTGCTGA TATGTTGAAAGCTTACAAAGTGTATATCACAGCATCTCCATTTTGGAGGATGACAAATTTCTTGGCCAACAGAACAATTC TAAAGCTAGTACAGAATGTGAGCAGTGTTCACATTATTGACTTTGGGATTTTCTATGGTTTCCAGTGGCCTTGCCTCATC CAACGTCTATCAGAAAGACCGGGTGGGCCACCAAAGCTTCGAATTACCGGAATTGATCTTCCTCAGCCGGGATTTAGGCC TACAGAAAGGGTCGAGGAGACGGGGTGGCGCCTTGCGAAGTACTGCAAGAGGTTTGGAGTGCCATTTGAGTACAATTTCC TTGCACAGAAATGGGAAACTATAAGACTTGAGGACCTCAAAATCGACATGGAAGAAGAAGTAACCGTGGTGAACTGTTTG TACAGATTGAAGAACCTCTCTGATGAAACTGTGACTGTGAACTGTCCAAGAGATGCTGTGTTGAAGTTGATCAGGAGGGT TAATCCAAACATCTTCATACATGGGGTAATCAATGGAACTTACAATGCACCGTTTTTTCTGACTCGGTTCAGGGAGGCAC TCTTCCATTTCTCATCATTGTTTGACATGTTTGAGGCTACTGTACCGCGCGAAGATAAATATAGGTTGATGTTTGAGGAA GGGTTATTTGGACGGGATGCGGTTAATGTGATAGCGTGTGAGGGTGCAGAGAGGGTTGAAAGGCCAGAGACCTACAAGCA GTGGCAGGTTCGGAACCGCAGAGCAGGGTTCAAGCAACTTCCATTAGCGCCGGAACTCTCGAGTAGAGTGAAGGAAATGG TGAAGAAGGAATATCATAAAGATTTTGTGGTGGATGAGGATGGCAAGTGGGTTTTACAGGGATGGAAAGGGAGGATTCTT CATGCTGTTTCGTGTTGGGTTCCTGCTTAGGCAATGACCTTCTTAGGGATTTTTTTATATTTTTCTTTCATAGTTTGTGT ATAAGGTACCAAGTAAGGATATATTAATCTTGAATTTAAATGGTCTGAATTGGAAATCACAATATACTTAAACTAGGATG GGATATATTCTTACTCGTACACTTCATAGAAGTTTATTTCAGAGGTTTATATGCCTTGGTCAATGCAAAACATTTACTAT ATGTGTTTTTCATTTTTCCTATCTGCATTTGAGTTTTCTATTTTAGATACTGATTTTTCTTGCTGGCTTGGATAATCATG CTAATGCACCTGCGTTTGGCTAAAACAGTAAAACTTACATGACAAACTA
CDS sequence (LotjaGi2g1v0375500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCTCTATGGATTCCCTTTTGGAAAATTTCCCTGGTTCCCTGAACGGATGCATGTTTGGGAACGGTCCTGTATCTGT GTTTTCAAATCAGAACCCAGGTAGTGGGTTGAATGTGGAAGATTCATCATCCCCTTCAAACCATTCAGAATTGGCTGCTG ATTCTGGTCCTTCTGCTGCTGCTGCTGTTGGCACAACCTCAAGCTCAAATGGGGAATCTGGAGAGAGTAGTAAGCATTCC AATCCCATTCTCAGATACATCAGTGACATCCTCATGGATGAAGAAGACGATCTGGAGCGTAAACCCTGCATGTTGCAGGA TTGTTTGAGGCTCCAAGCTGCTGAAAAATCATTCTATGATGTGCTCGGTCGAAGCTATCCTTCATCGCCGCACCAAGTCC AGGGTGGTTTCCGTGATGATAACGCTGATCCAGATGATGGTTTTGGTGGGGGAACTACTAGTTCTGAGGGATATAGCAGT AACACCACTGATACTTCATGTGAGTCTGATTTGGTTAACGGTGCTGGTGATTTCGAGTCTTATTTTCGGCAAAGAGCTCT AGTTGATTCCCCAGGCAATAGCTCTGAGGTTTTGGATGGAGTACCTCTTGATCCATTGAGAGGTACACAACCTGGTGCCC TTTTTTCAAATGGAGCCTTGGATGTGATTCAATGGAAGGTTAAGCCACAGGTGATTCAAGAGAGTGTGATTCGGGGTTCT GCGGCAACCAAAGGACCAAGGGAGAAGAGAGGTCATCTTATGAATAATTTCTCACATGTGGAAGAGGAGAGAAGCAACAA GCTTTCAGCTGTTTACTCTGATGATTCGGAGCTATCAGAAATGTTTGATGAGGTGCTGCTTTGCAAGGATGGTAAAAGTC CATCTTTTTTTTGTTTTAATCATGAACCATCACAGATTGCTGGCTCAAGAGGATCTAATGGAAAGACATCGCGTTCAAAG AAAGGTTCCAAGAAGGGGACGAGTCCAACTACAACGGTAGATTTATGGACCCTGCTAACTCAATGTGCACAGGCCGTGGC TAGCTATGACCAAAGGAATGCGAGTGAGATACTCAAGCAGATTAGGGACAACTCTTCACCTTTTGGCGATGGACTCCAGC GTTTAGCTCATTATGTTGCCAATGGGCTGGAGACGCGATTATTTGCTGGGACACCGAAGTATACACTCCTTCAGTCTTCA TCTGCTGCTGATATGTTGAAAGCTTACAAAGTGTATATCACAGCATCTCCATTTTGGAGGATGACAAATTTCTTGGCCAA CAGAACAATTCTAAAGCTAGTACAGAATGTGAGCAGTGTTCACATTATTGACTTTGGGATTTTCTATGGTTTCCAGTGGC CTTGCCTCATCCAACGTCTATCAGAAAGACCGGGTGGGCCACCAAAGCTTCGAATTACCGGAATTGATCTTCCTCAGCCG GGATTTAGGCCTACAGAAAGGGTCGAGGAGACGGGGTGGCGCCTTGCGAAGTACTGCAAGAGGTTTGGAGTGCCATTTGA GTACAATTTCCTTGCACAGAAATGGGAAACTATAAGACTTGAGGACCTCAAAATCGACATGGAAGAAGAAGTAACCGTGG TGAACTGTTTGTACAGATTGAAGAACCTCTCTGATGAAACTGTGACTGTGAACTGTCCAAGAGATGCTGTGTTGAAGTTG ATCAGGAGGGTTAATCCAAACATCTTCATACATGGGGTAATCAATGGAACTTACAATGCACCGTTTTTTCTGACTCGGTT CAGGGAGGCACTCTTCCATTTCTCATCATTGTTTGACATGTTTGAGGCTACTGTACCGCGCGAAGATAAATATAGGTTGA TGTTTGAGGAAGGGTTATTTGGACGGGATGCGGTTAATGTGATAGCGTGTGAGGGTGCAGAGAGGGTTGAAAGGCCAGAG ACCTACAAGCAGTGGCAGGTTCGGAACCGCAGAGCAGGGTTCAAGCAACTTCCATTAGCGCCGGAACTCTCGAGTAGAGT GAAGGAAATGGTGAAGAAGGAATATCATAAAGATTTTGTGGTGGATGAGGATGGCAAGTGGGTTTTACAGGGATGGAAAG GGAGGATTCTTCATGCTGTTTCGTGTTGGGTTCCTGCTTAG
Protein sequence (LotjaGi2g1v0375500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISMDSLLENFPGSLNGCMFGNGPVSVFSNQNPGSGLNVEDSSSPSNHSELAADSGPSAAAAVGTTSSSNGESGESSKHS NPILRYISDILMDEEDDLERKPCMLQDCLRLQAAEKSFYDVLGRSYPSSPHQVQGGFRDDNADPDDGFGGGTTSSEGYSS NTTDTSCESDLVNGAGDFESYFRQRALVDSPGNSSEVLDGVPLDPLRGTQPGALFSNGALDVIQWKVKPQVIQESVIRGS AATKGPREKRGHLMNNFSHVEEERSNKLSAVYSDDSELSEMFDEVLLCKDGKSPSFFCFNHEPSQIAGSRGSNGKTSRSK KGSKKGTSPTTTVDLWTLLTQCAQAVASYDQRNASEILKQIRDNSSPFGDGLQRLAHYVANGLETRLFAGTPKYTLLQSS SAADMLKAYKVYITASPFWRMTNFLANRTILKLVQNVSSVHIIDFGIFYGFQWPCLIQRLSERPGGPPKLRITGIDLPQP GFRPTERVEETGWRLAKYCKRFGVPFEYNFLAQKWETIRLEDLKIDMEEEVTVVNCLYRLKNLSDETVTVNCPRDAVLKL IRRVNPNIFIHGVINGTYNAPFFLTRFREALFHFSSLFDMFEATVPREDKYRLMFEEGLFGRDAVNVIACEGAERVERPE TYKQWQVRNRRAGFKQLPLAPELSSRVKEMVKKEYHKDFVVDEDGKWVLQGWKGRILHAVSCWVPA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 31 | 80 | 50 | - | – | |
| MobiDBLite | 31 | 53 | 23 | - | – | |
| PANTHER | 48 | 706 | 659 | 3.5E-295 | – | |
| PANTHER | 48 | 706 | 659 | 3.5E-295 | – | |
| MobiDBLite | 60 | 80 | 21 | - | – | |
| MobiDBLite | 129 | 170 | 42 | - | – | |
| MobiDBLite | 152 | 170 | 19 | - | – | |
| MobiDBLite | 306 | 330 | 25 | - | – | |
| ProSiteProfiles | 326 | 704 | 379 | 89.363 | ||
| Pfam | 337 | 703 | 367 | 4.3E-114 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0375500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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