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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0378500 |
| Transcript ID | LotjaGi2g1v0378500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | La-related; TAIR: AT4G35890.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q94K80|LRP1C_ARATH La-related protein 1C; TrEMBL-Plants: tr|K7K470|K7K470_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0378500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87547668..87553498) extracted from Lotus japonicus Gifu genome v1.2.
ATTCAGTGACAGTAAGTAACCAAAAAGTCCTGATGGAAAGAAAAGGGAAATAAACAAACACAAGGGCATATCCGTCAAAT AAAAAATAAGAAAAAACCTGGTTCCTTCCACATCAATAACGCTTCCTTTTCTCCTACGCACACAAACAAAAACCAAACCT TCTTCTTCTTCTTCGTCTTCTCTCTGCGACGATTAGATCGCTCAATTTTTGGAAACCCTAATCTACTGCATTTCTCGACC TAGCACTCTCTGTGCGAATCGAATCTTCTCTGTTACCGTCGATCATCTCATCGACTGAGATATCAGCCCTAATGGCCATG ACCGGTGACCATGATTCCTCCGATGACATCCAATCGCGCCGCACCGCGCGCATCCCCGTCGCTGCTTCGCCGTGGAACCA GGTTGTTCGCGGTGAATCGGAGCCTGTTGCTGCTGCTCCTTCCTCGCCTCCGCCGCCGGAAGCTTTCCCCTCTGACGCTG TGGATGATTCAGGCTCCGATAACGGCGGCCGGAACAATGGCGGCTCGGTTAACAGGCCTGCTTGGAATAGGCCATCCAAT GGCGCGGGTTTGGAGGTTCAGCCTGTCATGGACGCGCAATCGTGGCCTGCGTTGTCGGAGGCTGCTAGAGCTAAGATGAA ATCGGAGTCGTCGAAGGGTTTGTTGGATATAGCCTCTGTTCCCCAATCGCAGGTTTGGTTCCTTACCCATTCACTCTAGT ATTTTAGTTGTTACAATACCTGCAAATTTATCTATTTCGATTCCAATCAGTTAGAGCTAATTGTATTGAACTATTGATAG CGATATCGAATTGATTCTTCATGTATTGTCAATGTTTTTTCTCTTCGAAGCTTGCGTTAACGGGTAGTAGTGGATTTTAG TATTTAAAATAGCCATGGATTTAAATCAATGGAAGATTATATACACATAGAGTCATGTTCTTCTCAAATTTGCCACAGTT TCGAAAATGCTATTTCGTTGGTTTTTAGTTCTGGAAAACGCATGATTTAGAAATGCATAATTTTATACTTTGCTGGCATG AAGGTTTTTTTGTATTTCTTTTTTCCAATATGTATATGTGCACATGGACATTGCTATTGTTTTGAGTGTCAATTGTAGGC TGCGGGAAGCATGCCTTCTTCCTCGTCACAAAGACAGGTCAGTGATAAAGCAAGCGTGAACAACAATACGGTGCCAACTC ACCAGAAACCAATCAAGCATAACAGCTCAAATACATCTTCTTATGGTGGCCACCAACATCAGTCTGCGCCCCAAGTTTCA AATGCTGCAACAGGGTCTCACAACTCTTATCCGAAAGATCATACACATAGAAGTGGGTATGTGTCGAATGATCATCCGCA ACAGCGTAACACATTTAGAAATCGCAACAATGGTCCACATCAGCGTGGAGATGGAGCTCACCATCATAACTACGGGAATA GGCGTGATCAGGACTGGAATACTCGAAGAAATTTTAATGGTAGAGACATCCATATGCCACCTAGAGTTGTTCCAAGATTT ATGAGGCCACCTCCACCCCCACCTCCAAATTCTGCACCATTTATTCACCCACCACCAGTGCGGCCTTTTGGTGGCCACAT TGGATTCCATGGTATGGTGTATTAATGTCTGGATGATCTCTTTCATGATATGAATATGCTCTGATGACTATTTTTCATTT TCAGAACTTGTACCTCCGGTGGTATTTGTTGCAGCTCCACCCCCACCCCCGGATTCACTGAGAGGTGTTCCTTTTGTGCC TCCAGTTCCACATCATGCAATGTTCTTTGCAGGTTCAGACCCTCAGCTGCATACTAAGATAGTAAACCAGATTGACTACT ATTTTAGGTACTGTTTTTTATTTCTTCTGCTTTCTTGTCTTGAGCTGGTTTCGGAACTAAATGCAGACACCATCACTTGT CTATTGCAGTAATGAGAATTTAGTTAAAGACACATTCTTGCGGCAGAACATGGATGACCAGGGCTGGGTTCCAATAAAAT TAATTGCAGGCTTCAAGAAAGTAAGTTGTTCATGGTATACCATATATGATTGTTTTTTAGTGTGTTTTAGAGACATGTTG CTCTTTTGTTTTTATAGTTATATCAATATATTTATACATTTTTAAATTATTTATTTTTCAACAATGATTAATCTATAGAA GGGTAATTTTGATCCTGCTCTCTTATGTTAAGTATATTAAAATTTAATGCATACTCATGCACGTTTGTAAAAATAACGTA TTTTTTTATCAAATTCTTAAACATAACTACATTACATGTACGCTATAGAAACAAAAGCAGGATGAAAGAAGTCAGACCAA AACTTCAAAAATCTAGTGTGGAGGTTGAAGTTTTGGTCTTTTACTTTTTTTTTTCATTCTGCTTTTGTTTCTATAACGTA CAATGATGTAGTTATGTTTAGAATTTGATAAGGAAGATAAAAAATGTTATTTTCACAAACGTTTTAACGAAGGGCATGCA TATTCGTTGAATTTTAATGGATATAATTACTCTCATGCATGTGATATTATCATTGTTCACCAAGTGTGGACCAAAATAAC CTTTTATGGTTTGTTATTTATGTTAATCAATGCATTTTGGTTGTCACTAAATGTCTTCTAGGCCTAACTTGATACATTGT ACAGTCTAGTGTTTACATAAGTTTATCTCGCTGTACTTTTTAGAATCTTAATCATGACTGACACGGATAAAATGGAAATG GATGATGATTTAAGTCTCAATTTTGGAGTTCACGGGTAAAAAAGTATTCATCAATAAATCAGGTGTTGACTGTGGTGGAG TTCATGTATAGTAACAATTTTGAAATTGTGTGTTTCTTTTTTCAGTTCTTGAATTCCAATGTTTTTTTTTTTTGATTTGG GTTGTAGCATTATTTCCCTACCCATTGATGAATACTTTTTTCTGTCAGGTTATGCATTTGACTGACAATATCCAGCTTAT ATTGGATGCTGTTCAAACTTCATATGTTGTTGAAGTGCAGGTATTTCTTACTCTTGCATTGAAGATTTGAGTTTATAATT TGAAAAAAGTGATGGTTCTCATTTCGCTTGTTCTATTATTCTATTAAACTTGTTTTAAATTTCTTTATTTCTTTATTTCA TAGGGTGACAAGATAAGGAGACGAAATGATTGGATGAGATGGATCATGCCTTCTCCTCAGTTTCCTAATGTTACAAGCCA TGGTGTGTTGAATCATGACAAACTGGCTGAACAATTACACAACATTTCTCTGGAGACAACTAACTACGACATTCCAGGAA GACTAGGTGTTCTATCTGATAATTCTCAACATGGGCCTGTATTTGGGGATTTGAATAATCCAATGCAGCTCTCCACTAGC GAGAGTGCTGGTCAAGTTGGTTTTCATGGCTCAGATCACTCTATTTCTGCAAGAAATTAGAGCTGTAGATGTACTTCAGC ACTGTATTTTGGGAGCTCTTAAAGAGGGACACGGGAAGCAGGTATATATAGATGATCATTTTTGCATATCACACAATGAG CACAAGGCATGTTTTGGATAACATGATTGATAAATGGGAGAAAATACCTATAAAACAGAATAGAACAAAAAGGTAAGTCC CCCCCTCCCAACCCCCCAAAAAAGGCAATTTTAATTTATGTTTTTTCTTTGGTTTTCGTGGAGCTAAGTGGCGCGACTAT TGTGATTACTTGTTTTTATGGGATGGATATACTGTGCTTAATCTTTAGTGGGGGAGTGTTTACGTCAAAAGACGGGGGAA TTTTGGCTTTGTTTCCCGACTGCCCCTCAGCTGCTTTTTAAAATCTGAGGTCAGCTTCCAACCATTATATTAGTTCATGG GTCTTGAATGTGTCTGATAGAGCTATCTGCTGCCACCGAGGGAAGATGGAATGTGGCTTTCTGCTACAAGAACTTGTCCT GCAACTGCTTTCATGAGTGATTGCATATGCACTTTTTATATCTCGTCTCTGTCATCTCTGGAATGACGTTGATATTAATA GATTTATTTTCATGTTTAAACTCACAAAAATTCATAAGCCATTAGTGGCCCCTGTGAAGTTCTTGAAAACTTAAGACTTT AACTATTCAGGTTATAGCTGTATAAGGTGGATATTATTTATCTATTTAGACTTGAAGTTGCATGGAACCTGAACCTAAGT TTATTATTTCATAAAACCTGGCCATCATTTCTTGCCTTCATGAAATAATCATTTTTGCTGTTTGATGTTGTGGGTGTAAT AATCTGTTTTGCCAAATGTACTGGTAAATTGTATTGTACCTCTGATTTGTTTTACATTTCTTATCTTTAATATTTTATTT CTCATTATGAATGTTATTGTCCTATAAATGCTTATAAGAACTTGAGTAAAACTTTTGATATACAGTGTAAGCTTAGCAAT CTTAAAATTCATGCAAAAATGACAAATATAGTTGACTAACATTTAAATAGAGTTTCAATCTCCCCTAACACTATCAACCC CAACTATATCTCTACACATCTGTGTAGTGGATGAATATTTTTACCACACTATAAAGTCTAAACAATCCTCTTTAGCTTTC TACATTCTACCAATTCTAGGTATGTAATAGAGCAAATCCCTTAGATTGTTCCAAGAATCTATGTCTGTCTTCTCCTTTCC CTACTACTCATAACAGAGAAGTTTCACCAAAGGGTCATCCAATTGTTGGACCACATGTTCTGGTAGAGCTCCATTTTTGC CATCCTTATGTTTCGACGTGATTGGTTTGATTGATTTGAATCTTTTTAGGCTAAACTTAGCACTAGTTTAAACTGAAAAC TCTTCATGTTCCTGCCACTAACACCGTTGTCTTCTCACAATTGTCCATTCATAATAGGTGTCCTTTGAATTTTTTCTGTT GCCCGTAATTCCTATTGTTCAATTTAGCCATTCTCATCAACTGCACTTTAGAGCGCGAACCTTCTGTTTTTTATTGGTGA TGTCCTTTTATGAAAAAGGACAAAACTTACAATATTAACTCAAGAGCCTCCATATTTTTCAAAAGGATTTTTTGTATTCG GACCTCTATTGAATTGTTTCTCCATATGCATTTTGATTTCTTCAATGTATTTTGAACTTGACAATAAATTCCAGCCCTGT GATCTATGATACAAGGTTTATTTCATATGCTTCCCACGAACCAACTTTTGGTTTTATTAACTTCGGTTGGTAGAATAGCT TAAGATGAATCTCCAAGTAAAACAATTTCCATCAGTTTTCGCAATTGTTTATTGATCTTTAATAACACATTCATGCTCGT GCAAGGCAACCACAATTCTTGTATTTTCAATTCTCATATTCTTCCCACGAACCAACTTTTGGTTTTATTAACTTCGGTTG GTAGAATAGCTTAAGATGAATCTCCAAGTAAAACAATTTCCACCAGTTTTCGCAATTGTTTATTGATCTTTAATAACACA TTCATGCTCGTGCAAGGCAACCACAATTCTTGTATTTTCCCACTTATGTCCCCCATGTTACTCTCTTTGATTGTCATCCT TTCTTCCAACGCATTAGCCGTATCTATCATCTTTGTTACCTCTCAAATTCAGACCACCATCCGAATATGATAGGCCATAC TACTGATAGGTTTTGAAACAAACAAATTATTGAACTTCACCAAAAGTACACATACACAAATATGGTAGATGAACTTCTCT ACCAGCCTTAGAGTCAAGGGCCTTCTATGAGTGTCCTTACAAAAAATGAAACTGAATAAACACTATAAATTTAACTCATA TCTTAACTTTTTTTCTTAGAGTAATTAAGTCACATTTTACATATAATTGCGGGTGCGTTTAACGGGCACCA
CDS sequence (LotjaGi2g1v0378500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATGACCGGTGACCATGATTCCTCCGATGACATCCAATCGCGCCGCACCGCGCGCATCCCCGTCGCTGCTTCGCC GTGGAACCAGGTTGTTCGCGGTGAATCGGAGCCTGTTGCTGCTGCTCCTTCCTCGCCTCCGCCGCCGGAAGCTTTCCCCT CTGACGCTGTGGATGATTCAGGCTCCGATAACGGCGGCCGGAACAATGGCGGCTCGGTTAACAGGCCTGCTTGGAATAGG CCATCCAATGGCGCGGGTTTGGAGGTTCAGCCTGTCATGGACGCGCAATCGTGGCCTGCGTTGTCGGAGGCTGCTAGAGC TAAGATGAAATCGGAGTCGTCGAAGGGTTTGTTGGATATAGCCTCTGTTCCCCAATCGCAGGCTGCGGGAAGCATGCCTT CTTCCTCGTCACAAAGACAGGTCAGTGATAAAGCAAGCGTGAACAACAATACGGTGCCAACTCACCAGAAACCAATCAAG CATAACAGCTCAAATACATCTTCTTATGGTGGCCACCAACATCAGTCTGCGCCCCAAGTTTCAAATGCTGCAACAGGGTC TCACAACTCTTATCCGAAAGATCATACACATAGAAGTGGGTATGTGTCGAATGATCATCCGCAACAGCGTAACACATTTA GAAATCGCAACAATGGTCCACATCAGCGTGGAGATGGAGCTCACCATCATAACTACGGGAATAGGCGTGATCAGGACTGG AATACTCGAAGAAATTTTAATGGTAGAGACATCCATATGCCACCTAGAGTTGTTCCAAGATTTATGAGGCCACCTCCACC CCCACCTCCAAATTCTGCACCATTTATTCACCCACCACCAGTGCGGCCTTTTGGTGGCCACATTGGATTCCATGAACTTG TACCTCCGGTGGTATTTGTTGCAGCTCCACCCCCACCCCCGGATTCACTGAGAGGTGTTCCTTTTGTGCCTCCAGTTCCA CATCATGCAATGTTCTTTGCAGGTTCAGACCCTCAGCTGCATACTAAGATAGTAAACCAGATTGACTACTATTTTAGTAA TGAGAATTTAGTTAAAGACACATTCTTGCGGCAGAACATGGATGACCAGGGCTGGGTTCCAATAAAATTAATTGCAGGCT TCAAGAAAGTTATGCATTTGACTGACAATATCCAGCTTATATTGGATGCTGTTCAAACTTCATATGTTGTTGAAGTGCAG GGTGACAAGATAAGGAGACGAAATGATTGGATGAGATGGATCATGCCTTCTCCTCAGTTTCCTAATGTTACAAGCCATGG TGTGTTGAATCATGACAAACTGGCTGAACAATTACACAACATTTCTCTGGAGACAACTAACTACGACATTCCAGGAAGAC TAGGTGTTCTATCTGATAATTCTCAACATGGGCCTGTATTTGGGGATTTGAATAATCCAATGCAGCTCTCCACTAGCGAG AGTGCTGGTCAAGTTGGTTTTCATGGCTCAGATCACTCTATTTCTGCAAGAAATTAG
Protein sequence (LotjaGi2g1v0378500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMTGDHDSSDDIQSRRTARIPVAASPWNQVVRGESEPVAAAPSSPPPPEAFPSDAVDDSGSDNGGRNNGGSVNRPAWNR PSNGAGLEVQPVMDAQSWPALSEAARAKMKSESSKGLLDIASVPQSQAAGSMPSSSSQRQVSDKASVNNNTVPTHQKPIK HNSSNTSSYGGHQHQSAPQVSNAATGSHNSYPKDHTHRSGYVSNDHPQQRNTFRNRNNGPHQRGDGAHHHNYGNRRDQDW NTRRNFNGRDIHMPPRVVPRFMRPPPPPPPNSAPFIHPPPVRPFGGHIGFHELVPPVVFVAAPPPPPDSLRGVPFVPPVP HHAMFFAGSDPQLHTKIVNQIDYYFSNENLVKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVQTSYVVEVQ GDKIRRRNDWMRWIMPSPQFPNVTSHGVLNHDKLAEQLHNISLETTNYDIPGRLGVLSDNSQHGPVFGDLNNPMQLSTSE SAGQVGFHGSDHSISARN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 91 | 91 | - | – | |
| PANTHER | 20 | 486 | 467 | 7.1E-211 | – | |
| PANTHER | 20 | 486 | 467 | 7.1E-211 | – | |
| MobiDBLite | 61 | 79 | 19 | - | – | |
| MobiDBLite | 125 | 256 | 132 | - | – | |
| MobiDBLite | 125 | 190 | 66 | - | – | |
| MobiDBLite | 202 | 219 | 18 | - | – | |
| MobiDBLite | 221 | 250 | 30 | - | – | |
| Gene3D | 326 | 417 | 92 | 3.8E-31 | ||
| SUPERFAMILY | 326 | 417 | 92 | 2.27E-27 | ||
| ProSiteProfiles | 327 | 416 | 90 | 25.645 | ||
| SMART | 331 | 407 | 77 | 2.6E-25 | ||
| CDD | 336 | 406 | 71 | 1.18966E-32 | – | |
| Pfam | 337 | 392 | 56 | 6.3E-22 | ||
| MobiDBLite | 474 | 488 | 15 | - | – | |
| MobiDBLite | 474 | 498 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0378500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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