Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0379500 |
| Transcript ID | LotjaGi2g1v0379500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 3-dehydroquinate synthase; TAIR: AT5G66120.2 3-dehydroquinate synthase; Swiss-Prot: sp|U3KRF2|DHQS_ACTCH 3-dehydroquinate synthase, chloroplastic; TrEMBL-Plants: tr|A0A151THT1|A0A151THT1_CAJCA 3-dehydroquinate synthase; Found in the gene: LotjaGi2g1v0379500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87631814..87634592) extracted from Lotus japonicus Gifu genome v1.2.
TGTAATAGGCATGTCCATGGGAAGAGGGTCCTCGTTGTCACTAATGAAACGGTTGCGCCACTGTATCTGGACAAAGTTAT TGATGCCTTGACTAAGGGAAACCCGAATGTTTCTGTTGAGAGTGTGATATTGCCGGATGGGGAGCAGTACAAGAACATGG TAGGTCTTTCGTGTTCGAATTGGCTGTTGTGTTTAATGGCAGTCTTGGTGATTGCATTAAAAGTGTTTTCATGTTCAACT TGTAGGATACTCTTATGAAAGTCTTTGACAAGGCCATTGAGTCACGGCTGGACCGGCGATGTACATTTGTTGCCCTCGGA GGTGGTGTGATAGGTGATATGTGTGGCTTTGCTGCTGCTGCCTTCCTACGCGGTGTTAATTTCATTCAGATTCCTACCAC TGTTATGGCACAGGTCTTTCATGGTTATTTTTTAAGATTTCTTTCATTGTATATGTCAATTAGATCTGTTGCTGCTCAAT CTAACATTAATGATTCTAACCTCTGGCCACTGCCTAAGTTATCCTTTTCCACTATTTATTGGTTTGTGTATTATGTTCCC AGGTTGATTCTTCAGTTGGTGGCAAAACTGGGATAAACCATCGCCTTGGAAAGAACCTGATTGGTGCTTTTTACCAACCT CAGTGTGTGCTTATAGATACGGACACATTAAGTACATTACCAGAGAGGGAACTGGCATCAGGGTTTGGAGAAGTTATAAA GTATGGACTCATTAGGGATGCTGAATTTTTTGAGTGGCAAGAGAAAAATATGCAGGCATTGATGGCAAGGTAAAAATTTG ATTTTTTATAGTGCTGTGACAAGCTCTCATCCCTGCTTTTAGCCTGTTCTATTTTCATTATGAGGCTTGTAATAATTGGT GAAACAGCTCATGGATGGTAAAAGAATCTTCTGGGAAATGAACGTTAAAATATGTACTTTTGGATGGAAAAAGTATCTCA AACGTGGGCTTTATGAATTCTCATTACTCATTAGCATATGATATGATGCACATATATGATGTTTTCTTAAAAAATTAAAA TGGGAAACAACAATACATGTTAAATTAGCGCGCACACACACACACATATATACATATGTAAAAAGATAAAATAAGATTTA TGTACATGTGATTATTCAACCCCAACTCTTATTCCATACATTCTCCCTCTCTCAAGACCCTACATAATAATTTTGAGCTT TGCTTAGCAAGTGCTTTGAGTGTCATTGATATCCAAAAAAATGATAATAGAAGTGCAGCTGTATTGTCGGGTACGGGGCA TCAGACACCTACTTTCTTGTTGGTCTATTCTTTCTTATCAGAATATTGTGCAGTTGCTTTCATAATGCTCGTCCACTTAC TCCAGTTTTTACAAGTTAATGTAAACCCACTGCAGAGATCCTAATGCACTGGCATATGCTATAAAGCGATCTTGTGAAAA CAAGGCCGAGGTTGTGTCCTTGGATGAGAAGGAAAGTGGACTGAGGGCAACATTGAACTTGGGTCATACATTTGGTCATG TGAGTGATTGTTTTTGACTGGTTATTGTATTATTATATGTTGCAAATCTGTAAAATCTGTGTCGTGAAAAGTGAAAACCT TCTTTAGATTTATTTACTCTCCTGATGTGTGGAATTGTTCTTATACTTGGTGATGGGTCAAAGGAAAACAAAAGAAACAG ACACCCTTGGTTATAGATTAATGTCTTCTGTTCAAGTTACAATTTCAAATGCGATAAAAATAGAATGAGTAAATGGAAAC ATGGATTGTTTGAGAAAACATTTGTAGATAAGATGGTGTGCTAGCTTCTTTTTTATTTTTTAGCATGGAATTTTAGTTTC TACAGTGGATTGAACATGAATAATAACAATCAAGGCTTTTCCATACTACTTGAGGGGGCTACATGGAAATCTGATGCTGC AATGTCCTATGATTTATGCTGTCTAAAACATTAAATGTGTATTTTTTTGGCACTCTTTTTCCGCAATGATAGGTAATGTC AGATGTTTGATTATGAATCACTCATGCCACTTCGATGCTATTACTATATTTCTGAGAGTTAATCTAATGACTTCAGAAAC TTTCAGCCTCCTAATTCTCAGAGTATTTGCATATTGCAGCTTTTAAAATATAATGGTTAAAAATCTTAGAATTTGTGTTT GTCTGCTGTGTGATCCATGACATCAAATTGTTCTGAAAAGTTTTGCTTGTGTTCTCTTAATTGGTATATTTCCCTCTCTG ATTTATACTCTTCCCCATTTCACTTATTTTAGGCAATAGAAACAGGAGTTGGCTATGGGCAGTGGCTTCATGGAGAGGCT GTTGCAGCTGGCACGGTATCTATATTTTTCAGAATAGAAACACGAATTATGCCTACATCTGTTTTGATTTTGAGGGAAAC TGTATGTCAAATGTACACAGGTAATGGCTGCTGACATGTCATATCGCCTAGGTTGGATTGATGATTCTATTGTGAGACGA GTCAGAGACATTTTAATACAGGCCAAGTTACCTATTGCGCCTCCGGAAACAATGACTGTTGACATTTTTAAAAATGTCAT GGCGGTGAGTACTGATTCTGCAGTAATCTTTTGATGTTTTTGTTTTTAATTTATGACAAAAGTTTCATATTTAATTTGGT GTATCAGGTTGATAAGAAGGTAGCAGATGGGTTGCTAAGGCTTATCCTTCTAAAGGGTCCTCTAGGCAATTGTGTTTTCA CAGGGGATTATGACAGAAAGGCCCTAGATGATACACTTAATGCATTCTGTAAATCCTGA
CDS sequence (LotjaGi2g1v0379500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATACTCTTATGAAAGTCTTTGACAAGGCCATTGAGTCACGGCTGGACCGGCGATGTACATTTGTTGCCCTCGGAGG TGGTGTGATAGGTGATATGTGTGGCTTTGCTGCTGCTGCCTTCCTACGCGGTGTTAATTTCATTCAGATTCCTACCACTG TTATGGCACAGGTTGATTCTTCAGTTGGTGGCAAAACTGGGATAAACCATCGCCTTGGAAAGAACCTGATTGGTGCTTTT TACCAACCTCAGTGTGTGCTTATAGATACGGACACATTAAGTACATTACCAGAGAGGGAACTGGCATCAGGGTTTGGAGA AGTTATAAAGTATGGACTCATTAGGGATGCTGAATTTTTTGAGTGGCAAGAGAAAAATATGCAGGCATTGATGGCAAGAG ATCCTAATGCACTGGCATATGCTATAAAGCGATCTTGTGAAAACAAGGCCGAGGTTGTGTCCTTGGATGAGAAGGAAAGT GGACTGAGGGCAACATTGAACTTGGGTCATACATTTGGTCATGCAATAGAAACAGGAGTTGGCTATGGGCAGTGGCTTCA TGGAGAGGCTGTTGCAGCTGGCACGGTAATGGCTGCTGACATGTCATATCGCCTAGGTTGGATTGATGATTCTATTGTGA GACGAGTCAGAGACATTTTAATACAGGCCAAGTTACCTATTGCGCCTCCGGAAACAATGACTGTTGACATTTTTAAAAAT GTCATGGCGGTTGATAAGAAGGTAGCAGATGGGTTGCTAAGGCTTATCCTTCTAAAGGGTCCTCTAGGCAATTGTGTTTT CACAGGGGATTATGACAGAAAGGCCCTAGATGATACACTTAATGCATTCTGTAAATCCTGA
Protein sequence (LotjaGi2g1v0379500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGFAAAAFLRGVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF YQPQCVLIDTDTLSTLPERELASGFGEVIKYGLIRDAEFFEWQEKNMQALMARDPNALAYAIKRSCENKAEVVSLDEKES GLRATLNLGHTFGHAIETGVGYGQWLHGEAVAAGTVMAADMSYRLGWIDDSIVRRVRDILIQAKLPIAPPETMTVDIFKN VMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLNAFCKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 286 | 286 | 1.4E-190 | – | |
| Hamap | 1 | 280 | 280 | 56.021 | ||
| PANTHER | 1 | 286 | 286 | 1.4E-190 | – | |
| Gene3D | 1 | 95 | 95 | 1.4E-45 | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| CDD | 1 | 280 | 280 | 3.37614E-149 | – | |
| SUPERFAMILY | 2 | 277 | 276 | 6.54E-97 | – | |
| TIGRFAM | 2 | 275 | 274 | 2.5E-100 | ||
| Pfam | 2 | 248 | 247 | 3.7E-101 | ||
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 21 | 42 | 22 | - | – | |
| Phobius | 43 | 286 | 244 | - | – | |
| Gene3D | 96 | 286 | 191 | 3.0E-70 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | 3-dehydroquinate synthase activity | Catalysis of the reaction: 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonate = 3-dehydroquinate + phosphate. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Aromatic amino acid family biosynthetic process | The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan). |
Expression pattern of LotjaGi2g1v0379500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…