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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0380100 |
| Transcript ID | LotjaGi2g1v0380100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Senescence/dehydration-associated-like protein; TAIR: AT2G17840.1 Senescence/dehydration-associated protein-like protein; Swiss-Prot: sp|O48832|ERD7_ARATH Protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic; TrEMBL-Plants: tr|A0A151THU6|A0A151THU6_CAJCA Spartin; Found in the gene: LotjaGi2g1v0380100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87676770..87680989) extracted from Lotus japonicus Gifu genome v1.2.
CACGTGTCCTTTCTTCATTGCTCCACTTTCCTTCCCTCTCAAAACCCACACCACACTCCATCACTGAGAACACAACCATT CATTCTTCAAAATCAATGGCTACTCAAAACCCTAACCGTCGAAATTCCCTCTACCCCGAAGTAATCGATTCCAACCCAGA AGCTCCACATCACTTCCATCAAGCAAACCACTCATCATCTTCTCAATCCTCCAACCTCTACCCTTCAATCGACTTCAACG ACCTCGTTCAGAATCTCTTCCCGGACGACATCACCACCGCCACCGAGGAGATCCTCCTCAAGATCCCGGGTGCTATCCTC AACCTTATAGACAAAGACTACAGCGTCGAGCTCGCTTCCGGTGACCTCACCGTCACGCGTCTCCGCCAGGGCGACAACAC CATCGCAGTCTACGCCCGTGTCGCTGACGAGATCCAATGGCCGCTCGCCAAGGACGAGACCGCTGTCAAACTCGACGACT CTCACTACTTCTTCTCCTTCACCGCCCCCAAGGGTTCCGATTCCGACGAGGAAGAGGAAGCGGGAAAGGGAAAGGGTTAC AGCTCCGATTTGTTGAGCTACGGTTTGACGGTCGCGTCGAAGGGGCAGGAGCGTTTGCTGAAGGAGCTCGATGCGGTGCT GGAGAGCTGCAGTAGCTTCTCTGTGCAGAAGGTTTCTGAGAAGGTGAAGAGGAAAGGGGAGGCGCTAGATGGGTCGGTGG CGAGGGAGGTTTCGCCGAAGGATTTGGAGTCGTCGGCGACGAAGAAGGAGATGATGGAGGAGCGGAGTGCTGCGTATTGG ACTACGCTGGCTCCGAATGTGGAGGATTATAGTAGTACTACTGCGAGGATGATTGCTGCAGGGTCTGGTCATGTGGTTAA GGGGATTTTGTGGTGTGGAGATGTGACGGTGGATAGGTTGAACTGGGGGAACAAGGTTATGAAGAAGAGGTTGTCTTCTG GTTCGCGTTCGGAGATTAGTCCTCAAACCTTGAAGCGGATTAGAAGGTTTGCCATATAATCTAATGTTGTTAGTTATTAT GGTTAATGGTGTTTTGCTTTCTAGGTCTAAGGGAGTGTTTTGGTAAACAACTTAATTAAGTGCTCATGCACTTATTCATA AGCTAATTTGATAACTTATTGATGTAAATTGAAAATAGTTTATTCATAAGCATAAACTCTTATTCACAAGCTAACCTGAA CAACTTATGAAGATAAGCTCAACACACCTTATGTTGTCTCTTCAATGTTTATTAGAGAAGGAAGTTAGAGTCTGCTACTT CTCTGAGTTGTTTTAACTACCTTTTTCTTATCAGTTTGAGCTATTAAACAATTGACCATTTGCCCTTTCATTTGATGTAA TTAATTTTTTCTATAGGGTTAAGAGAGTGACAAGAATGACGGAGAAAGTGGCAAATGGGTTGCTCTCTGGGGTCGTGAAA GTGTCTGGATTCTTTACCAGTTCACTGGTAAATTCCAAAGTCGGAAAGAAATTTTTCAGCCTTCTACCAGGGGAAGTTGT GCTTGCATCATTGGATGGATTCAGTATGTAATTTATGATTTTTCTTGCATTTTACTTGGGTTATTAACAATTTAGGATGC TGAATGTTGTTTGAGTTCCTACTTCTAACTAGTAACCAAATATGAAAGATCTTCCAGACAAGAAAATGGAGGTTCAATGA GGTGGAAATGGGATGCATGCTCATATGAGAGTTGTTATAGATTGGAATTGCCTTGCTTAATTAATTTTTTGTTTCGGCGT TTCAATGTGCACAATGAAAATAGAAGGGTGCATTTTATTTGCTACAGATGAAGATGGGACAGAACACAAATTATTGTTTG ATGTTTTGTTTTAAAAATGGTCATGGAACTAAACAAAAGTCTAAGTATTTGTTACTTAAATAAATCAGGGGATAACTTGT CCCTGGACTCTTACCCAAAAGTAAAAAGTATCCATTAATTTAACCAAAAACATCAATACCAATAATTAATAACCAACTCC AATTGGACTCTTACACCAGCCTCTGCTCTGCCTCCAAAGCTGCTTGTGTTGTTCATTGACCACCATATAATTGATACTGA TTAAGTTACTTGTAGTGTGCTGTAAATATACACACCCAGTGTATTAATTAGAGAAAATGGTGTCTTTTAAAGATTAATCT TAATGTCTAATTGTTTTGCCAAATGTCAGTTTTATCTGGTTGTTATGCGATTGACTTTATAATTAGGTTTTCAAATGTAG TCAGTCAGTATCATTTGCCTTTCACCAATACTCCTTGATCCGTTCATGCCAAATTTGTTAGGGCCCTCCAGCCTTGTCCA AAATCATTCTTTAGACATTTTATATATTCATTTGCAAACAATTCTTATATTTGGAGGTTTATGATCAGCCAGCCGTGAAA GCTTGGTACTTTATCAAGCTTAATTATGTTCATGATACATATGTCCTGGAAAAGTTTGAATTTCAAATTTCACATACTGT TTTGTTTCAAACTTATTGTGAATAGGTAAAGTGTGTGATGCTGTTGAAGTAGCTGGAAAAAATGTCATGTCAACGTCATC CACTGTGACAACTGAGCTTGTCGACCACAGGTAATATGCTCCATAGATGCAATATCTAGAGGTAAAAATATACCTACATA TTAAGGATTGACGTGATGCTAGGATGATTTTCCTTTCCTAAACTAGTCATTAAAAGTCCATGCTCTCTGGCTTTGCTGTT GAGATGATTCGAAAATTTAGGCATACTTTAATACATGGTGGGTGCAATGTCATTGTGCTCACAAGATCAGAAGAGTGAAT TTGATAATTTGTTGACTGCAGATATGGGGAGCAAGCTGCTGAAGCAACAAGTGAAGGGCTTAATGCTGCTGGTCATGCTC TGGGTACTGCATGGGCTGCGTTTAAGATCAGGAAGGCTATTAACCCTAAGAGTGTTTTTAAACCCACCACACTGGCCAAG TCTGGTGCTAAAGCTGCAGCTAAAGCTGCAGCTTCTGATTTGAAGTCTAAAAAGTCCAAGTGATTTGTGGCAGTAGTTCT TCAATTTAGGTTTGGTCATCCTGCTATCATAAGCTGCTGCATTTGGCTTTACATGACCCCCTTTTTCCTCCGGGAAAGGC GGGTGAACATCGCATGATTTATTGTTAATATTATTTTGTAAGTTTTTTTTTTCCTTCACATGTATAAGATTTCCTTAGAA TTGGGTTAGGCCTAACTGTACCCCAAAACCTAGCTTAGAAGTGAGGGTTATTCTACCCTTTATAAGGACTATCTTGGTCA TATCTCTAATTAATGTGAGACTTCTAACAGATTTCAATTTAAGACTTTAAGTAAACCATCACTTTGGTCACTTTTGATTT AGATTTCCATACCTGAAAGATGAAAATAGTGATCAATTAAGAGTTCAGGGTTTGTTATTGAAAATTGGCTAAACTGATTG TCTTTTTACATCTTTGAGAAATGAAAATGGTGATTTCCATCATTCAAGATTGAACTGAAATGCCTGGCTCATTTTTGTGG GACCAAAATGATTGTGTATTAAGATAAGGTCTTTAGAAAAAATACAGTTTAATCTCTATCATATCGAGACTCACTATGAT TGGTTATGAGATCTGTTAATTATATTGAGAAAAGATGATCCTTTCTTCTCCTACACAGCCATATATATATGCTTGTGTAC AACTGTATTTATTGCTTGTGTAGCAAGAAGTTCACTACACAGCCATATATATGCTTGTGTACAAATGTTTAGTGATAAAT GCTGGCAATCAATGAATTAATCGTGGTTCTGGTCTTCCACTGTCTGAGGAAAATCAACCCCGTTGGGTTAGTACATTTGA TAGTCAATTCAGTTAGTTACATAATTTTCTTGAGATGTTATTTTCAATCTTCACATCTACACAATCCATAACTTTAATTG GATAAATTAAACTTTAGAATGTTTTTTACGTAATCTTAATTTTTAATATTTCCTGTTGTGTGATATTTTGCTGTAATATT GCTTTACTCGCAACTCATTAGCTGCTCAATGGCTCTTTCCTCGTATAGTTGGCTTTGTGGAAGTGAAAGAAAAACCAGAC ACATAGCATTCAGTGGATTAACAAAGTGGTCTGAGATTGACTGATTGTGCCAACAACCTAACATTGTCTTCTTTTTCGTA CCTTCAAATGTTTTATTTAAGGCTAGATTTGCTTTTGGCCCCTCAAACTTTATGATCACT
CDS sequence (LotjaGi2g1v0380100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACTCAAAACCCTAACCGTCGAAATTCCCTCTACCCCGAAGTAATCGATTCCAACCCAGAAGCTCCACATCACTT CCATCAAGCAAACCACTCATCATCTTCTCAATCCTCCAACCTCTACCCTTCAATCGACTTCAACGACCTCGTTCAGAATC TCTTCCCGGACGACATCACCACCGCCACCGAGGAGATCCTCCTCAAGATCCCGGGTGCTATCCTCAACCTTATAGACAAA GACTACAGCGTCGAGCTCGCTTCCGGTGACCTCACCGTCACGCGTCTCCGCCAGGGCGACAACACCATCGCAGTCTACGC CCGTGTCGCTGACGAGATCCAATGGCCGCTCGCCAAGGACGAGACCGCTGTCAAACTCGACGACTCTCACTACTTCTTCT CCTTCACCGCCCCCAAGGGTTCCGATTCCGACGAGGAAGAGGAAGCGGGAAAGGGAAAGGGTTACAGCTCCGATTTGTTG AGCTACGGTTTGACGGTCGCGTCGAAGGGGCAGGAGCGTTTGCTGAAGGAGCTCGATGCGGTGCTGGAGAGCTGCAGTAG CTTCTCTGTGCAGAAGGTTTCTGAGAAGGTGAAGAGGAAAGGGGAGGCGCTAGATGGGTCGGTGGCGAGGGAGGTTTCGC CGAAGGATTTGGAGTCGTCGGCGACGAAGAAGGAGATGATGGAGGAGCGGAGTGCTGCGTATTGGACTACGCTGGCTCCG AATGTGGAGGATTATAGTAGTACTACTGCGAGGATGATTGCTGCAGGGTCTGGTCATGTGGTTAAGGGGATTTTGTGGTG TGGAGATGTGACGGTGGATAGGTTGAACTGGGGGAACAAGGTTATGAAGAAGAGGTTGTCTTCTGGTTCGCGTTCGGAGA TTAGTCCTCAAACCTTGAAGCGGATTAGAAGGGTTAAGAGAGTGACAAGAATGACGGAGAAAGTGGCAAATGGGTTGCTC TCTGGGGTCGTGAAAGTGTCTGGATTCTTTACCAGTTCACTGGTAAATTCCAAAGTCGGAAAGAAATTTTTCAGCCTTCT ACCAGGGGAAGTTGTGCTTGCATCATTGGATGGATTCAGTAAAGTGTGTGATGCTGTTGAAGTAGCTGGAAAAAATGTCA TGTCAACGTCATCCACTGTGACAACTGAGCTTGTCGACCACAGATATGGGGAGCAAGCTGCTGAAGCAACAAGTGAAGGG CTTAATGCTGCTGGTCATGCTCTGGGTACTGCATGGGCTGCGTTTAAGATCAGGAAGGCTATTAACCCTAAGAGTGTTTT TAAACCCACCACACTGGCCAAGTCTGGTGCTAAAGCTGCAGCTAAAGCTGCAGCTTCTGATTTGAAGTCTAAAAAGTCCA AGTGA
Protein sequence (LotjaGi2g1v0380100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATQNPNRRNSLYPEVIDSNPEAPHHFHQANHSSSSQSSNLYPSIDFNDLVQNLFPDDITTATEEILLKIPGAILNLIDK DYSVELASGDLTVTRLRQGDNTIAVYARVADEIQWPLAKDETAVKLDDSHYFFSFTAPKGSDSDEEEEAGKGKGYSSDLL SYGLTVASKGQERLLKELDAVLESCSSFSVQKVSEKVKRKGEALDGSVAREVSPKDLESSATKKEMMEERSAAYWTTLAP NVEDYSSTTARMIAAGSGHVVKGILWCGDVTVDRLNWGNKVMKKRLSSGSRSEISPQTLKRIRRVKRVTRMTEKVANGLL SGVVKVSGFFTSSLVNSKVGKKFFSLLPGEVVLASLDGFSKVCDAVEVAGKNVMSTSSTVTTELVDHRYGEQAAEATSEG LNAAGHALGTAWAAFKIRKAINPKSVFKPTTLAKSGAKAAAKAAASDLKSKKSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 454 | 454 | 6.8E-259 | – | |
| MobiDBLite | 1 | 39 | 39 | - | – | |
| PANTHER | 1 | 454 | 454 | 6.8E-259 | – | |
| Pfam | 253 | 420 | 168 | 1.5E-45 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0380100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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