Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0380500 |
| Transcript ID | LotjaGi2g1v0380500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT4G34950.1 Major facilitator superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|G7JXI0|G7JXI0_MEDTR MFS transporter; Found in the gene: LotjaGi2g1v0380500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87697297..87700535) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAACCATGTTCTTCACAATCTAATTTGCAACATGTGTGCAATTTAAGAAATAATAGAGTCGCCAATCACCATCAACT CAATCCTAAAAAAATGTAATTGACTCATGAATCAATCCTGCCAGGCTGCCACTTAATGATTATCTATTAATTTCATCTTT CATCAAATAAGTTCATGATCGTGAACCTATAAATAAAAAATGACCAAAACCATTGAAAAGACAGACTCAAAAGCAAAATA GTATCCAAGTTCTCTAGATCATAATTCCTCAAGTTGTTGTTCATTTCTCATTGTGATCATTATGTTGTTATTTCCAAGGT TTGAAGGTGGAAAATGGCTAGGATTTGTTACAGCCATATGGGTTCAAGCAATATGTGGAAACAATTACACATTTGCAAAC TATTCTGATGTGTTGAAAAGCCTAATGGCTCTGACCCAAATGCAGCTGAACAATCTCTCTGTTGCTAAAGATGTTGGCAA GGCTTTTGGTGTGTTATCTGGTCTTGCTTCTGATCGTTGGCCAACTTCAGTTATTCTCATGATTGGAGCCACCATGGGAT TCATTGGCTATGGAGTTCAATGGCTTGTTGTCAGCCACACAATCACTCCACTCCCTTATTGGCTGGTAAATATAGTTTTC TTTCAATAATAGAATATTACATACATTGGTATTCCAATCTAATTTTAACCCAAAAGGCAACAATATATTCTATTTTTAGC TGTTTGGTTTGAAAGAGTTTATTTGAGCTTATTTTATAATAGCATATTTTATAAAAACATAAACTCTATGTGAGTATTTG AAAGAGGTTAGGTAAGTATAGAAATGAATAAAACAATTTAAAGACAAAATTCAATTTGTTTGATTGCTTCACATTCTTAG ATAAATCGACCTATGTTGAGTCATGGTCACTCCTAAGCCTAAGTGAAGGAGGAATGTTCGGTTAGACTCGCGGCAACTAA CATAAAACTAGTCATATCTTAAGCATTATTCTAGTGATTCATGTAGCTGACATTAGTTAGTGAGATAAGACTTTTATTGT TGTTTCGGAATCTTAGAGAATGATTTTTGAAATGTGTTGCAGATGTGTATATTCTTGTGTATGGGAGGAAACAGCTCAAC ATGGATGAACACAGCAGTGCTTGTCACATGCATGAGAAATTTCCCACAAAACCGTGGCCCAATTTCTGGAATTCTCAAGG GATATGTTGGACTCAGCACAGCAATCTTCACAGACATATGCACAGCTTTGTTTTACTCAGACCCTTCAAAGTTTCTCCTA ATGCTCACCATTGTTCCTGCTGTTATTTGCCTCATTGCTGCAATCTTCCTCCATGAATCCCCACCAGCTTCAACCTCAGC AGAGGAAAACAGAGAAACCCAATTCTTCAATGCATTCAATATAATTGCAGTCACAGTAGCTGTCTACCTCTTAGTCTTTG ACATCTCAGGACCACACACCCATGTTCTTTCTCTGGTTTTCACAGCAGGGTTACTCATCCTGTTAGCCATGCCACTTCTT GTACCTTTCTACTTTGTCTTCTTCAAATCAAGCCATGGTCTTGACAGAGAAAAACAGAGTGTTCACGAACCGTTGCTCGG CGAAGAAACCAAAAGCGTTGAAGAGAAGGAGGAGAACCATGAAGTGAGTGATGCAATTGCAACCAAGGTGGAGGAGGTTG AGATAAAGCGGAAACCGGTGATAGGGGAGGAGCACACTATCGTTGAAATGGTGAAAACGGTTGATTTCTGGGTTCTGTTT GTGTCGTTTCTCTGTGGAGTGGGAACAGGACTATGTGTGATGAATAACATGGGGCAGATGGGACTAGCACTTGGTTACTC TGATGTTTCTATATTCATTTCATTCATCAGCATTTGGGGTTTCTTTGGACGCATCATTTCTGGATCCCTCTCAGAATACT ACATCAGGTTTGTTCATTTCCTAAATTTCAGTGATCAACTTTGTTAGGATAAAATTCATTACGGTTAAAATGAGTTGAGA GTAAACTGATTTATGTTTGAATACATTTATGAAAATAGTGACTTTTGTAAAATCGAGCTATAAAATCATATAACTGATTA TGTTCAACATATAAGCTACTCACTTAAGTTTATACGCAAAATTGATTTCTGGAGTGGCAACATGTTTGAATGTGCATCAC ACACTCCAAAGCACATTATTTCAATAGTACATTGCAGCTTATGATTTAATTTGATTTTCTAGCTATATACATGGTTTCTA GAAGCGAAACCAAACACACATTGAATCAATTCTAAAAAATAACTCTCAACATCTGTATGGTCATCAAAAGTTATTTTACA AAATGAGAATTGATTCTGAGAAAAAGAACCAAACACACTTAATTCCCAGATACTTGACTCGTTTGTTATAGCTGCAGAGG GGATATTGATGGACCTTGAATGTTGTTTTGTTGCAGAAAATCAGGCACGCCAAGGCTAGTTTGGAATGCTGCTTCACAAA TTCTGATGGCTGGGGGTTACATTACATTGGCCTTGGCCTTACCAGGATCACTTTACATTGGATCAATGTTAGTGGGAATA TGCTATGGAGTTCGTCTAACTATAACACCAGCAGCAGCTTCAGAACTATTTGGTCTCAAATACTATGGTTTATTGTACAA TATCCTAATTCTCAACCTTCCTATTGGTTCCTTCCTCTTTTCTGGTCTCATCGCTGGTTATCTTTATGATATGGAAGCAA CTAGTGTTCCTGAAGGGGGAAACACTTGCATTGGAGCACATTGTTTCATGCTTGTGTATGTGATTATGGCTTTTGCTTGT GTCCTTGGATGTGGATTGGACTTGCTGCTAGCAGCTAGAACAAAGAAGGTTTATTCCAAGATTCATCTAGAGAGAAGTCA AGTCAATTCCTAAGTTCAATGTTGAAAATCATTATGAAATCAAAATCATGATAGACAGAAACAAATTTCTTCAGATTTTG CTTGTGCCCGTCATGATTTTGATTTCTCCGCAATCTTCAACTGAGATTTCAAACATCCACGTAGACAGGCAGGCAATTTT TTTGGTAGGGTTACGGTTTTCAACATTTTCTTGTTAGAGAATGATTGTTAATATCTTTTCATCAAAATTTGAGTTTCTCT CTTCCCTTTTTACACGAAAGGGAATATGAAGATGGTGTAAAATTTTAAGGGTGTGAATAAACATTTTTTTTATGTTATAA CAAATAAAGTAATTTTATATTTATAGTGCATGTAGCTTG
CDS sequence (LotjaGi2g1v0380500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTTATTTCCAAGGTTTGAAGGTGGAAAATGGCTAGGATTTGTTACAGCCATATGGGTTCAAGCAATATGTGGAAA CAATTACACATTTGCAAACTATTCTGATGTGTTGAAAAGCCTAATGGCTCTGACCCAAATGCAGCTGAACAATCTCTCTG TTGCTAAAGATGTTGGCAAGGCTTTTGGTGTGTTATCTGGTCTTGCTTCTGATCGTTGGCCAACTTCAGTTATTCTCATG ATTGGAGCCACCATGGGATTCATTGGCTATGGAGTTCAATGGCTTGTTGTCAGCCACACAATCACTCCACTCCCTTATTG GCTGATGTGTATATTCTTGTGTATGGGAGGAAACAGCTCAACATGGATGAACACAGCAGTGCTTGTCACATGCATGAGAA ATTTCCCACAAAACCGTGGCCCAATTTCTGGAATTCTCAAGGGATATGTTGGACTCAGCACAGCAATCTTCACAGACATA TGCACAGCTTTGTTTTACTCAGACCCTTCAAAGTTTCTCCTAATGCTCACCATTGTTCCTGCTGTTATTTGCCTCATTGC TGCAATCTTCCTCCATGAATCCCCACCAGCTTCAACCTCAGCAGAGGAAAACAGAGAAACCCAATTCTTCAATGCATTCA ATATAATTGCAGTCACAGTAGCTGTCTACCTCTTAGTCTTTGACATCTCAGGACCACACACCCATGTTCTTTCTCTGGTT TTCACAGCAGGGTTACTCATCCTGTTAGCCATGCCACTTCTTGTACCTTTCTACTTTGTCTTCTTCAAATCAAGCCATGG TCTTGACAGAGAAAAACAGAGTGTTCACGAACCGTTGCTCGGCGAAGAAACCAAAAGCGTTGAAGAGAAGGAGGAGAACC ATGAAGTGAGTGATGCAATTGCAACCAAGGTGGAGGAGGTTGAGATAAAGCGGAAACCGGTGATAGGGGAGGAGCACACT ATCGTTGAAATGGTGAAAACGGTTGATTTCTGGGTTCTGTTTGTGTCGTTTCTCTGTGGAGTGGGAACAGGACTATGTGT GATGAATAACATGGGGCAGATGGGACTAGCACTTGGTTACTCTGATGTTTCTATATTCATTTCATTCATCAGCATTTGGG GTTTCTTTGGACGCATCATTTCTGGATCCCTCTCAGAATACTACATCAGAAAATCAGGCACGCCAAGGCTAGTTTGGAAT GCTGCTTCACAAATTCTGATGGCTGGGGGTTACATTACATTGGCCTTGGCCTTACCAGGATCACTTTACATTGGATCAAT GTTAGTGGGAATATGCTATGGAGTTCGTCTAACTATAACACCAGCAGCAGCTTCAGAACTATTTGGTCTCAAATACTATG GTTTATTGTACAATATCCTAATTCTCAACCTTCCTATTGGTTCCTTCCTCTTTTCTGGTCTCATCGCTGGTTATCTTTAT GATATGGAAGCAACTAGTGTTCCTGAAGGGGGAAACACTTGCATTGGAGCACATTGTTTCATGCTTGTGTATGTGATTAT GGCTTTTGCTTGTGTCCTTGGATGTGGATTGGACTTGCTGCTAGCAGCTAGAACAAAGAAGGTTTATTCCAAGATTCATC TAGAGAGAAGTCAAGTCAATTCCTAA
Protein sequence (LotjaGi2g1v0380500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLFPRFEGGKWLGFVTAIWVQAICGNNYTFANYSDVLKSLMALTQMQLNNLSVAKDVGKAFGVLSGLASDRWPTSVILM IGATMGFIGYGVQWLVVSHTITPLPYWLMCIFLCMGGNSSTWMNTAVLVTCMRNFPQNRGPISGILKGYVGLSTAIFTDI CTALFYSDPSKFLLMLTIVPAVICLIAAIFLHESPPASTSAEENRETQFFNAFNIIAVTVAVYLLVFDISGPHTHVLSLV FTAGLLILLAMPLLVPFYFVFFKSSHGLDREKQSVHEPLLGEETKSVEEKEENHEVSDAIATKVEEVEIKRKPVIGEEHT IVEMVKTVDFWVLFVSFLCGVGTGLCVMNNMGQMGLALGYSDVSIFISFISIWGFFGRIISGSLSEYYIRKSGTPRLVWN AASQILMAGGYITLALALPGSLYIGSMLVGICYGVRLTITPAAASELFGLKYYGLLYNILILNLPIGSFLFSGLIAGYLY DMEATSVPEGGNTCIGAHCFMLVYVIMAFACVLGCGLDLLLAARTKKVYSKIHLERSQVNS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 4 | 540 | 537 | 0.0 | – | |
| PANTHER | 4 | 540 | 537 | 0.0 | – | |
| CDD | 10 | 515 | 506 | 2.21303E-120 | – | |
| Pfam | 11 | 257 | 247 | 2.8E-92 | ||
| Gene3D | 11 | 205 | 195 | 7.7E-8 | – | |
| Phobius | 12 | 32 | 21 | - | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| SUPERFAMILY | 27 | 527 | 501 | 1.16E-25 | ||
| Phobius | 33 | 76 | 44 | - | – | |
| TMHMM | 75 | 97 | 23 | - | – | |
| Phobius | 77 | 94 | 18 | - | – | |
| Phobius | 95 | 105 | 11 | - | – | |
| TMHMM | 104 | 126 | 23 | - | – | |
| Phobius | 106 | 132 | 27 | - | – | |
| Phobius | 133 | 143 | 11 | - | – | |
| Phobius | 144 | 166 | 23 | - | – | |
| Phobius | 167 | 171 | 5 | - | – | |
| Phobius | 172 | 191 | 20 | - | – | |
| TMHMM | 172 | 191 | 20 | - | – | |
| Phobius | 192 | 211 | 20 | - | – | |
| TMHMM | 211 | 230 | 20 | - | – | |
| Phobius | 212 | 230 | 19 | - | – | |
| Phobius | 231 | 235 | 5 | - | – | |
| Phobius | 236 | 262 | 27 | - | – | |
| TMHMM | 240 | 262 | 23 | - | – | |
| Phobius | 263 | 329 | 67 | - | – | |
| Gene3D | 318 | 531 | 214 | 2.4E-9 | – | |
| Phobius | 330 | 351 | 22 | - | – | |
| TMHMM | 330 | 348 | 19 | - | – | |
| Phobius | 352 | 356 | 5 | - | – | |
| Phobius | 357 | 376 | 20 | - | – | |
| TMHMM | 363 | 385 | 23 | - | – | |
| Phobius | 377 | 396 | 20 | - | – | |
| Phobius | 397 | 417 | 21 | - | – | |
| TMHMM | 397 | 419 | 23 | - | – | |
| Phobius | 418 | 422 | 5 | - | – | |
| Phobius | 423 | 443 | 21 | - | – | |
| TMHMM | 423 | 445 | 23 | - | – | |
| Phobius | 444 | 454 | 11 | - | – | |
| Phobius | 455 | 480 | 26 | - | – | |
| TMHMM | 458 | 480 | 23 | - | – | |
| Phobius | 481 | 499 | 19 | - | – | |
| TMHMM | 500 | 522 | 23 | - | – | |
| Phobius | 500 | 521 | 22 | - | – | |
| Phobius | 522 | 541 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0380500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…