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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0383900 |
| Transcript ID | LotjaGi2g1v0383900.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | UPF0183 protein; TAIR: AT3G51130.1 transmembrane protein; Swiss-Prot: sp|Q9SD33|U183_ARATH UPF0183 protein At3g51130; TrEMBL-Plants: tr|I1J8N6|I1J8N6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0383900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88015250..88023476) extracted from Lotus japonicus Gifu genome v1.2.
ATCTCCATCTCTTCTTCATCTTCTTCCTCTCAAATCTTCATACCTTCAAACCTAAAAATTCCAGAAAAAACAAAAATCAA AATCCTCATCCCACACACCCTCCACCGCCCCCACCCAAAAATCAAAATCCACAACCTCCATTATCCCCACCCCTAAATCG CAGCCCACAACCTCCACCCCTTAATCGCAACCTCTGCTGCCCCCACCCCTAGATCGTAACCCAGCCAACACACACTGACC CACCACCCCAACCACCAACGAACCCAAAACGAAGGCAAAAGAGAAGTGTAGAAGAGTGTTGCTGAGTATTGATGCATTCA GATCTGGGTGCTTTTGCTTTCTGAGAGGAACTGCAAGGTCGAATCTCAAGGGGGAAACAGAGGAACCAATCATATCTGGA TTTAGGGATTCTGGGGTAGGATTTGGATTTGGGGGTTTTTTGATTTGGTTTTGAATGTTCTCTATATCATCAAAGAACTC ATTGCAGATGCAATTGCTTACCGTTTGGACAAGTTCAGAGGCCAATTCGAATTATGGGTGTGCAATAAATCAAGAACTTT GCAATTTGCATTCAATATTTGGGGGATAGATTTGTTTGGTGTGTGAATTGACAAATTCATGTTTCTCATTCTCGTTTTGG TTGGAATTCTCATCCTGTGTGCATTTGAGAGTTCTACATTTGGGGGATAAAGGGTGTTCAATTTGGGGGTGCTAATATGG TGCTAATTTTTGCTCTTATGATGAGGATTCAGCTGCTTTGAGGCCACAGACATACTTGAGGGTTGTGTGGCATTGGTGTT GATGTACTTGGATATATCAGATATGTGCAAGCTAGCCCGATTGAAGAGAGTATTTTGTGATGCTTCATTTGAGGATTTTA TTGGGTTTGCTCTGGGTTTTTAGATAAATTGTGTTGATTTCAAATTTTACCTTATCTGGTTCCTAATTTTTTTTCCTGAT GAATTGGCACCGGTATGATATTTATTCAGTTTCCTCTCATCCGTATAAATTCCGTTATATATGATAATAAGTTGATGTTG AGATTATTCAGAAAAAAGTTGATTTTCTGAGTTTTAGTTTATTTGTAAATGAAATTTATGGTTAACAGGGAGAATGATCT AGATGAACTCTGTTTTGATGAGATTATTGACCCCTGGGGAGTATTTTAAGACCACTGTAGTTCTATCTGTAACACTAGAG CTGCAACTGGGAAATTCTTGTTCTTTTAAAGACTATAACTTTTTCAACTTGAGGATATTGTTAATATCAAATGTGGAATT CAATGGTTCAAATTGCTTTAAAAAAAATGTAAATGAGAGTCTTGAATCTGGATTTTTTTTTTTTTTTTTTTCTGGAATTT TGGGTTTGAAGGTATGAAGATAACTAAGAGGAAGAAGATGAAGAAAGAGATGAAGTTCATGTGTTTTTTATTATTTTTTT ATTTTGTACGCAGAAAACGTTAGTTTTCAGACGGAAGTGTAACGGCGGACCTGTTTTGCAACGGAGTGTAAATGTTGAGG ATGATTTTTGCTAATTTTTTAGTTGGGGACAATTTTTGCAGAAAGGGCAAAGTTGAGGGACCAAAAGTGCAATTAAGCAA AAAAAAATTGACAAAAAATAAATAATTCATTAAAAAATAAAAAAAAACACGGGTTATTTGCTAGTGTTAGACCAAACATT TATATAACCTCATAGCAAACGCTAGCATTGAAGAATAGGAAAATAATTAGAAAAAAGATGGTTTCCGTGGCGTGCTGGAG GGGGCATCTGTGGTGTTAAAAGGGGAAAGGGAAGCTTGTTTATCCGTCCAATCCAATCAAACACCAACACAATAATAATA ATATATAAGCATTCATTCAATCAAACCCCTTATATGCTCCCATTTCATCACCGAAAGTAACGGAATCGTTTCACAAAACT CCAAAATACCCCTCCCTCCCTCCTCCACCTCATACCTACCACCACCACTATGTTGCAGAGACCCAGACGGCGTTGCGAGG GCACAGCCATGGGCGCCATCGTTCTCGATCTCCGTCCTGGTCTCGGAATCGGACCTTTCTCTCTCGGTAATTTCTCATGC CCTATCCCAATTGAACAACTATCTAATCCATTTTCGAATTCCACTTTGTTTTTCTCGAATTCGATTCATGTAGAGTTGTT GTCGTTTATCGATTGAGTTTTTGCTACTTAGGGATGCCTATATGTGAAGCATTTGCTCAGATAGAACAGCAACCTAATAT TTACGATGTGGTTCATGTCAAGTACTTTGATGAGGTTTGTAACTTATGATACTGCTGTTTGTTCTATGTTATTGCTGAGA TCACTGACAGTGACTTTTTTTTGTTTCCTGGGAAATTGATTTACATTTACTTTGATTTCTTATAGTCTGAGCATTTACAG GAACCACTCAAGTTGGATATTGTTATTAGCTTTCCCGATCACGGCTTTCATCTTCGTTTCGATCCCTGGTCTCAGGTGTT GTGTCTTTCCTCTGCCCCTCATTTTATCAAGTATTTGTTTAGAGAAAACATGAGATGATGTGGCTCGGTTAGTGAAATTT TTCTTTGCTGTGTCTTAAATAGGAAGCGCGTAAGTGCTTGATAAGTTAGTACTTTACAATTTATTGGATTGGTGTCTTAG CTATTGCTTTAGTTTTTTTAGTGTTGAGATCTAATTAATAGTTGTCGAATTACAATTAAATTAGTTTGACTGATATTTGA GAATGCAAATTTAGAAAGTGTATGAAGAGTTCCTGCGGAAAATGAATGGGTTCTGGAAGTCATTGGATTCTCTTTGAAAA GGCTGTAGTTTTTAGTTTGAATTCTGATTGATATGAGAATAATAAGAATGGAAAGTTGCTTAAGGATCTTGTGGAACTAT CCCAATGCAAATGAGAAACTATGTAGCAGTGTAATTGTAGTTTAGAATTTAGCTAAACTTTCTTACTCCAAGTTCATTAA GGGTGGATTACTTGAGCTTGTGTTTTTTCTGCACTAGATCTGTTTCTTTTGTTACAATCATGCGCGCTTTCCCATCACGA TGATGCTGCAGTAGAGAAGTTTTATTCATTTGAGCCTGATATTCCTGATTTGTTCAGCAGTTATGAATCATTTCCAAATT TCTCTTGCTTCTTCTTAAATATTGAACGCTTCAACCTCTGCTGTATGCTGCAGTTTTTATGCCTTTGATCATTTTAAGCT GTTGCACAGTGCCTGTATTCATTGTTAGCCATTTATGACAAGACTTGTTGTGACAAAACTTTCCGTACCATTTCAGAGAC TGCGTCTTATTGAAATATTTGATGTAAAGCGGCTTCAAATGCGCTACTCTACTTCTCTGATTGGGTGAGTTTTTGGACTT ATAATTTTAATCTCTATATATTGTTACAGACTTAATTGATTGTCTTTTCAACTTCTAGGGGACCGTCAACTCTAGCTACT TTTGTTGCTGTATATGCACTGTTTGGGCCAACATATCCTGGAATTTTCGATAAGGATAGAGGCATTTACACTCTGTTCTA TCCGGTATATATTTGGGACACAAAATTTATTATAGTTGCTGTTAATTTTTTTCTTTCTACAGTTCCACATTAATACTTTC TGAATTATATTTTCCTTGGTTTGGTCTTTAGGGTCTTTCCTTTGCATTTCCGATTCCAAGTCAGTTCACAGACTGCTGTC AAGATGGGGGAGGTATATCATCTTGAAACTGAAACATTGTTTTGAATTTTCTAATTCTAATATGTTAACTTTGTTTCTCT TCATCATGAAAGTGGAATTGCCATTGGAGTTTCCAGATGGGACCACACCAGTTACATGCCGTGTTTCTATATATGATAGC TCCTCTGGTAAGAAGGTTGGTGTGGGGTCTTTAATGGACAAGGCTTCTGCTCCTCCATTATCTCCTGGCAGCATTTACAT GGAAGAGGTTCATGTTAAGGTTAGGGCTATTTAAGTTTCCCTAAATCAGTTTGGGTTCTTGCTTCTTTAGTAGGACACCT TTTGGAGAAACTGCCTGCCCATTTTGAGTAGGTGGCTGTAACTTTGGTATAATTCCGTTCTTTCTCTGTTATGTAGCTGG GGGAAGAATTATACTTCACTGTTGGCTCTCAACACATTCCTTTTGGTGCATCCCCACAGGTAAGCTCCATGTTACATACA CTAGAAAGTTTGAGCTATGTGTTTAACGGATTATATTCCTGTTCTTTCTTTGTCACCTTATTCTTTATCTGAAGCCAAGT TTGTATTATGCTTCTTGTGTTATGCAGGATGTGTGGACTGAGCTAGGACGTCCCTGCGGTATTCATCAAAAGCAGGTACC CTGAATTACTAGTTATTAAATGAAATAAGGTTATTTTGTGGTAATGTTGTGTGATTAAACTGATATATGTTGCAGTGATG TCTGCTGAATTAGAGTGAACTCTTTCTGCATCTTTATTGTTGGTGTACTGTGGAGAATTGAATATATTAAGATTTATACA ATAATATTATTAAGATCTTCGTGGTCATTTCTTGAGTTTTTTTTAGCAAATATATAGTTCAATTTTAACTTTAAAATGTC TTCTCCCTCTAATGGATCATATGAGGAACTAGGCAATTGGTTTCTGTGTGTTTTAGACTACATCTTTGTTCGGTAACTTA GCTGGCGAGAAATAGAGAGGAAATACAGCCAGTGGGGAAATAAAATTGATGCAAGAAGGTGCATGTGATCAACCTGTTAT TTTTTCCTTCCGGTGTTGAAGAAAATGAACAAAAAATGTGCAGCTTATCTATTTTCCAAGATTACCCATACTGCTGCCAT ATCCACATGCTATGCTTTTGTGAATTCTCCTTCTTATGCGAACTGATTGTTCCTTCCAATTTTATACTTGTTTTTCTTTG TTTCTCTCATAGTAGTCAATCGCGGCAAATAGCGGCGCTATCGCGCCGTCGCGTCGCGTCGCGGCCCTTCCCCGCGATTC TGAATCGATCGCGTCGCGGAACGCCGTCGCGGCTGTCGCGCCGCGAATCGCGGCCAAATTGCGTTCAAATCACGTTCAAT CGCAGCAAATCGCGGTGCTCCAGGTTGAAGATGGGTCGGGTCCAAGGAAAATCCCCAAATTGCCCTCAAAATTTCAAAAT TAGGTTAAAATTTGAGGGTACTTTTGGGATTTCGCTCTTATAAGTGAAACGGTGCGTTTCACTCGTCTTCTTCAACGCGT TTCTTCTTCTTCTTCTTCATACGCGTTTCCTCTGCAATCTCCGGTGTCGTTCCTTCAGCTCAGCCCCTTCGACCAGAAGT CCAGAACCCATGGCCACGGCGCAATCTGACAAGCACCTTCCAGGCTCCGGCGACCACCACCCCTGTTTCTCTTGGGCCTT TGTTCTGTTCTGAGTTGCTCTGTTTTTTATCTTCTATTCCTCTATTTTTCTTTCCTTTCTTTTCCTTCTTATTTATTATT CTGTTCTCAAAAATACTTCTCCAGTTCTTCTCCTCTAGTATTCCTCTCTTCTCTATCACTTCATCATGTTATGAATTTGA ATTTTGAAGTTATATTTATCACTTTTTAGTAATTATATGTATATATTAATTATATAATATTATATGTGAAAAATCAAAAT AGCGGTCATCCCGCTATCCGCTATCCCGCTATCCCACTTTTGGGGTCGGCCGTTACGCGCCGCGATCCGGGATTGACTAC TATGGTTTCTCTTTCCTTTTCTTATTGGAGTTTTTCGACATGCACAGCAGAGAGCTGCATAGTTGTTGTACACTTGTACT TTCTATGGTTCTTGTAAAATGTAGGATATATGGTAGCCTAAGGCTAGATTAATTGCTTGAGGATATGCTTGGAACATATG GACATCTTGTATGGTTTCTCTACCTAATGCTTTAGTAGTAGAAGGTCTTTCTAGATCCACTAGGACACGTGCAATGTAGT TGATAAGTTCTTTTTGGTGGCATTCGTAATTCAGCAGTTCAGATTTCAGAAGACTTGCATTGATCCAAACAAAAGTTATC AAAATAGAGCTTACAGTCAAAATAATATCTGAAGCTAATGTTTCTTCTCGTAATCTTGTTTGCAAGTTAATGGACTAGTT ATGTCATTCATTATATATATATATTTAAGGAGGCATAATTTGAACTCTTCCTTGAGCCTTAAGTAACATCGTATTATTTT TAGCTTGTTAAGTGCTTGCATGAGTATTTTGTTTGGGTGGATTCTGATTCTCAATTCTGCAGGTAGATCAAATGGTTATT CATTCTTCCTCAGATCTTCGGCCTCGAACAACTCTCTGTGGAGATTACTTCTATAATTATTTTAATCGTGGTCTTGACAT CTTATTTGATGGACAGGTTTGTGTTTACCTCATTGTTCTGTTTATATGCACTGTGATACAATTGACAATGGAAGCTCCTC ATATCTATTGTATTTCAGACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTATCCTGGTCATGCTGATTTTAATTC TTACATCAAGTGCAACTTTGTTATCCATGGCTCAGATGGTAAGCAGTCTTATTTGCATTGCAGTATTTAGATTGGTCTTG ATGTAACAGTTATGTATATGTTTGTCATGAAAAATGAGATTTTGTTTTCTCCTTTCCAGCAGTGGACGGATCTTTTCAGG AAGTAAATAACAGCAAACAGGGGGCTATTACGCCTAGTACCAAGTGGGAACAAGTGAAGGTGATCTTTTTGCCTTTCCAA ATTGTATGGTTTTCCTTACGGCTGATGTTTCATCTTGGATGAACTTCTTTACTTGAAATATATGACATAATTTGGGGAAG AAAGTTGTGATTAGATTTGATATGGGTTTCTTATAATGATTCATAGAAGCTTTTATCATATATTCTTTTAGGAAACACTG GGGGATTGTGGGCGAGCTGCCATTCAAACTCAAGGTTCTGCAAGTAACCCTTTTGGTTCCACTCTTGTATATGGTTATCA AAATATTGCCTTTGAGGTGCGTCATTCTTGGTGTTTTTTCCTCCTGCTAATTCAATAGAGTACCAAGGTGCCTTGAAGAG ACTGCTAATCTATATTCTTGTGACCTTTTCAGGTGATGAAGAATGGTTATATTGCAACAATAACTCTTTTCCAGTCATGA TGGTATGTATCTATGTAAATTTCTACCTTATTTAGATAGCAAGTAATTATTACCTTAGTTTTTCATTAAACCAACATAGG CTTAGGTTTTCTAATGAAAATTCACCTAACTCAAGGAAATTGTCCTTTTATCAATGCTAGTTATTGTTTTAAAGATTAAA ACAAAATGCTGTTAGTATATGCAGAAAAATTTGCCACATCAGCATGACTGAAGGAAAATTTGTTTTTTTTTTATTAATGC TAGTTGTTGTTTGAAACAAACTGGCTGTTAGTCTATGCAGAAAAATTTAGTTGCCACATCAGCACTGAATGAAGAATGGA TGTATGACAACTGATCAAGATGGATCCTCAACGAGAATCATTTGATAATTTTAAGGATTCATTTAGAATCTTTTCAACTA GGACTAATCAAAAAGCTCTACAGACCTCTAGGCTCTAGGGAGCAACATATAACACTGAAATATGAGCATGTATACATTGC TGCAGGGGCTTTTGGCTACCCCTGATCTTTCTCTGTATTGTTTATTAAGGTTTCTCAAGCTTGGCTATGGAACTTCACAC GGAAAAGCTGGCTAGGTTTGTATGATCAGGGTGTATGATAAGTTCAACGATCATCACCATCATTATCGCCGTGGCAAGGG ATATCACAATTGTACAGCTATTGTGATAAATTGTACATATTAAAATTGTATTGTGTAAATTTTTAACATTTACGTTGACA TCTTGTACAAAGCTAATATACAAATTCCTAACGCATTTATCTTTCAGATGGCTTCATGTTGCTAGGTTTTTGAATTCTTT ACTCGCTTCAATTGTTCTCAGTCAACCACTTCTCTTCTCCTTTCTTTTCTTGATTGAGTTGTTTCTCCTGATCAAAGCAT GCTTGCCTTCTCTCATCAGTAGTTTTCTTTACGTATCTGTCCGTAATCAATCAAGCGTCTTTTTTGTTGTTTCAATAACC GTGGTGCAATGAATGCAGAGTTTTGTTAGACTGACTTTCCGTTTTGGTAAAAATCCACCACCACCATAGCACCAGTCTCT TCCCATTAACATCGTCCAGATATTGATATGTAGATAAAGTAATATACTAAATATTAAAATAATCATA
CDS sequence (LotjaGi2g1v0383900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCAGAGACCCAGACGGCGTTGCGAGGGCACAGCCATGGGCGCCATCGTTCTCGATCTCCGTCCTGGTCTCGGAAT CGGACCTTTCTCTCTCGGGATGCCTATATGTGAAGCATTTGCTCAGATAGAACAGCAACCTAATATTTACGATGTGGTTC ATGTCAAGTACTTTGATGAGGAACCACTCAAGTTGGATATTGTTATTAGCTTTCCCGATCACGGCTTTCATCTTCGTTTC GATCCCTGGTCTCAGAGACTGCGTCTTATTGAAATATTTGATGTAAAGCGGCTTCAAATGCGCTACTCTACTTCTCTGAT TGGGGGACCGTCAACTCTAGCTACTTTTGTTGCTGTATATGCACTGTTTGGGCCAACATATCCTGGAATTTTCGATAAGG ATAGAGGCATTTACACTCTGTTCTATCCGGGTCTTTCCTTTGCATTTCCGATTCCAAGTCAGTTCACAGACTGCTGTCAA GATGGGGGAGTGGAATTGCCATTGGAGTTTCCAGATGGGACCACACCAGTTACATGCCGTGTTTCTATATATGATAGCTC CTCTGGTAAGAAGGTTGGTGTGGGGTCTTTAATGGACAAGGCTTCTGCTCCTCCATTATCTCCTGGCAGCATTTACATGG AAGAGGTTCATGTTAAGCTGGGGGAAGAATTATACTTCACTGTTGGCTCTCAACACATTCCTTTTGGTGCATCCCCACAG GATGTGTGGACTGAGCTAGGACGTCCCTGCGGTATTCATCAAAAGCAGGTAGATCAAATGGTTATTCATTCTTCCTCAGA TCTTCGGCCTCGAACAACTCTCTGTGGAGATTACTTCTATAATTATTTTAATCGTGGTCTTGACATCTTATTTGATGGAC AGACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTATCCTGGTCATGCTGATTTTAATTCTTACATCAAGTGCAAC TTTGTTATCCATGGCTCAGATGCAGTGGACGGATCTTTTCAGGAAGTAAATAACAGCAAACAGGGGGCTATTACGCCTAG TACCAAGTGGGAACAAGTGAAGGAAACACTGGGGGATTGTGGGCGAGCTGCCATTCAAACTCAAGGTTCTGCAAGTAACC CTTTTGGTTCCACTCTTGTATATGGTTATCAAAATATTGCCTTTGAGGTGATGAAGAATGGTTATATTGCAACAATAACT CTTTTCCAGTCATGA
Protein sequence (LotjaGi2g1v0383900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQRPRRRCEGTAMGAIVLDLRPGLGIGPFSLGMPICEAFAQIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRF DPWSQRLRLIEIFDVKRLQMRYSTSLIGGPSTLATFVAVYALFGPTYPGIFDKDRGIYTLFYPGLSFAFPIPSQFTDCCQ DGGVELPLEFPDGTTPVTCRVSIYDSSSGKKVGVGSLMDKASAPPLSPGSIYMEEVHVKLGEELYFTVGSQHIPFGASPQ DVWTELGRPCGIHQKQVDQMVIHSSSDLRPRTTLCGDYFYNYFNRGLDILFDGQTHKIKKFVLHTNYPGHADFNSYIKCN FVIHGSDAVDGSFQEVNNSKQGAITPSTKWEQVKETLGDCGRAAIQTQGSASNPFGSTLVYGYQNIAFEVMKNGYIATIT LFQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 105 | 105 | - | – | |
| PANTHER | 17 | 404 | 388 | 1.5E-192 | ||
| PANTHER | 17 | 404 | 388 | 1.5E-192 | ||
| Pfam | 27 | 402 | 376 | 2.3E-137 | ||
| TMHMM | 105 | 127 | 23 | - | – | |
| Phobius | 106 | 123 | 18 | - | – | |
| Phobius | 124 | 404 | 281 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0383900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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