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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0383900 |
| Transcript ID | LotjaGi2g1v0383900.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | UPF0183 protein; TAIR: AT3G51130.1 transmembrane protein; Swiss-Prot: sp|Q9SD33|U183_ARATH UPF0183 protein At3g51130; TrEMBL-Plants: tr|I1J8N6|I1J8N6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0383900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88015250..88023586) extracted from Lotus japonicus Gifu genome v1.2.
CTCAACGTTTACACTCCGTTGCAAAACTGGTCCGCCGTTACACTTCCGTCTGAAAACTAACGTTTTCTAGGTAAAAAATA AATAAATAATAAAAACACATGAATTTCATCATCTCCATCTCTTCTTCATCTTCTTCCTCTCAAATCTTCATACCTTCAAA CCTAAAAATTCCAGAAAAAACAAAAATCAAAATCCTCATCCCACACACCCTCCACCGCCCCCACCCAAAAATCAAAATCC ACAACCTCCATTATCCCCACCCCTAAATCGCAGCCCACAACCTCCACCCCTTAATCGCAACCTCTGCTGCCCCCACCCCT AGATCGTAACCCAGCCAACACACACTGACCCACCACCCCAACCACCAACGAACCCAAAACGAAGGCAAAAGAGAAGTGTA GAAGAGTGTTGCTGAGTATTGATGCATTCAGATCTGGGTGCTTTTGCTTTCTGAGAGGAACTGCAAGGTCGAATCTCAAG GGGGAAACAGAGGAACCAATCATATCTGGATTTAGGGATTCTGGGGTAGGATTTGGATTTGGGGGTTTTTTGATTTGGTT TTGAATGTTCTCTATATCATCAAAGAACTCATTGCAGATGCAATTGCTTACCGTTTGGACAAGTTCAGAGGCCAATTCGA ATTATGGGTGTGCAATAAATCAAGAACTTTGCAATTTGCATTCAATATTTGGGGGATAGATTTGTTTGGTGTGTGAATTG ACAAATTCATGTTTCTCATTCTCGTTTTGGTTGGAATTCTCATCCTGTGTGCATTTGAGAGTTCTACATTTGGGGGATAA AGGGTGTTCAATTTGGGGGTGCTAATATGGTGCTAATTTTTGCTCTTATGATGAGGATTCAGCTGCTTTGAGGCCACAGA CATACTTGAGGGTTGTGTGGCATTGGTGTTGATGTACTTGGATATATCAGATATGTGCAAGCTAGCCCGATTGAAGAGAG TATTTTGTGATGCTTCATTTGAGGATTTTATTGGGTTTGCTCTGGGTTTTTAGATAAATTGTGTTGATTTCAAATTTTAC CTTATCTGGTTCCTAATTTTTTTTCCTGATGAATTGGCACCGGTATGATATTTATTCAGTTTCCTCTCATCCGTATAAAT TCCGTTATATATGATAATAAGTTGATGTTGAGATTATTCAGAAAAAAGTTGATTTTCTGAGTTTTAGTTTATTTGTAAAT GAAATTTATGGTTAACAGGGAGAATGATCTAGATGAACTCTGTTTTGATGAGATTATTGACCCCTGGGGAGTATTTTAAG ACCACTGTAGTTCTATCTGTAACACTAGAGCTGCAACTGGGAAATTCTTGTTCTTTTAAAGACTATAACTTTTTCAACTT GAGGATATTGTTAATATCAAATGTGGAATTCAATGGTTCAAATTGCTTTAAAAAAAATGTAAATGAGAGTCTTGAATCTG GATTTTTTTTTTTTTTTTTTTCTGGAATTTTGGGTTTGAAGGTATGAAGATAACTAAGAGGAAGAAGATGAAGAAAGAGA TGAAGTTCATGTGTTTTTTATTATTTTTTTATTTTGTACGCAGAAAACGTTAGTTTTCAGACGGAAGTGTAACGGCGGAC CTGTTTTGCAACGGAGTGTAAATGTTGAGGATGATTTTTGCTAATTTTTTAGTTGGGGACAATTTTTGCAGAAAGGGCAA AGTTGAGGGACCAAAAGTGCAATTAAGCAAAAAAAAATTGACAAAAAATAAATAATTCATTAAAAAATAAAAAAAAACAC GGGTTATTTGCTAGTGTTAGACCAAACATTTATATAACCTCATAGCAAACGCTAGCATTGAAGAATAGGAAAATAATTAG AAAAAAGATGGTTTCCGTGGCGTGCTGGAGGGGGCATCTGTGGTGTTAAAAGGGGAAAGGGAAGCTTGTTTATCCGTCCA ATCCAATCAAACACCAACACAATAATAATAATATATAAGCATTCATTCAATCAAACCCCTTATATGCTCCCATTTCATCA CCGAAAGTAACGGAATCGTTTCACAAAACTCCAAAATACCCCTCCCTCCCTCCTCCACCTCATACCTACCACCACCACTA TGTTGCAGAGACCCAGACGGCGTTGCGAGGGCACAGCCATGGGCGCCATCGTTCTCGATCTCCGTCCTGGTCTCGGAATC GGACCTTTCTCTCTCGGTAATTTCTCATGCCCTATCCCAATTGAACAACTATCTAATCCATTTTCGAATTCCACTTTGTT TTTCTCGAATTCGATTCATGTAGAGTTGTTGTCGTTTATCGATTGAGTTTTTGCTACTTAGGGATGCCTATATGTGAAGC ATTTGCTCAGATAGAACAGCAACCTAATATTTACGATGTGGTTCATGTCAAGTACTTTGATGAGGTTTGTAACTTATGAT ACTGCTGTTTGTTCTATGTTATTGCTGAGATCACTGACAGTGACTTTTTTTTGTTTCCTGGGAAATTGATTTACATTTAC TTTGATTTCTTATAGTCTGAGCATTTACAGGAACCACTCAAGTTGGATATTGTTATTAGCTTTCCCGATCACGGCTTTCA TCTTCGTTTCGATCCCTGGTCTCAGGTGTTGTGTCTTTCCTCTGCCCCTCATTTTATCAAGTATTTGTTTAGAGAAAACA TGAGATGATGTGGCTCGGTTAGTGAAATTTTTCTTTGCTGTGTCTTAAATAGGAAGCGCGTAAGTGCTTGATAAGTTAGT ACTTTACAATTTATTGGATTGGTGTCTTAGCTATTGCTTTAGTTTTTTTAGTGTTGAGATCTAATTAATAGTTGTCGAAT TACAATTAAATTAGTTTGACTGATATTTGAGAATGCAAATTTAGAAAGTGTATGAAGAGTTCCTGCGGAAAATGAATGGG TTCTGGAAGTCATTGGATTCTCTTTGAAAAGGCTGTAGTTTTTAGTTTGAATTCTGATTGATATGAGAATAATAAGAATG GAAAGTTGCTTAAGGATCTTGTGGAACTATCCCAATGCAAATGAGAAACTATGTAGCAGTGTAATTGTAGTTTAGAATTT AGCTAAACTTTCTTACTCCAAGTTCATTAAGGGTGGATTACTTGAGCTTGTGTTTTTTCTGCACTAGATCTGTTTCTTTT GTTACAATCATGCGCGCTTTCCCATCACGATGATGCTGCAGTAGAGAAGTTTTATTCATTTGAGCCTGATATTCCTGATT TGTTCAGCAGTTATGAATCATTTCCAAATTTCTCTTGCTTCTTCTTAAATATTGAACGCTTCAACCTCTGCTGTATGCTG CAGTTTTTATGCCTTTGATCATTTTAAGCTGTTGCACAGTGCCTGTATTCATTGTTAGCCATTTATGACAAGACTTGTTG TGACAAAACTTTCCGTACCATTTCAGAGACTGCGTCTTATTGAAATATTTGATGTAAAGCGGCTTCAAATGCGCTACTCT ACTTCTCTGATTGGGTGAGTTTTTGGACTTATAATTTTAATCTCTATATATTGTTACAGACTTAATTGATTGTCTTTTCA ACTTCTAGGGGACCGTCAACTCTAGCTACTTTTGTTGCTGTATATGCACTGTTTGGGCCAACATATCCTGGAATTTTCGA TAAGGATAGAGGCATTTACACTCTGTTCTATCCGGTATATATTTGGGACACAAAATTTATTATAGTTGCTGTTAATTTTT TTCTTTCTACAGTTCCACATTAATACTTTCTGAATTATATTTTCCTTGGTTTGGTCTTTAGGGTCTTTCCTTTGCATTTC CGATTCCAAGTCAGTTCACAGACTGCTGTCAAGATGGGGGAGGTATATCATCTTGAAACTGAAACATTGTTTTGAATTTT CTAATTCTAATATGTTAACTTTGTTTCTCTTCATCATGAAAGTGGAATTGCCATTGGAGTTTCCAGATGGGACCACACCA GTTACATGCCGTGTTTCTATATATGATAGCTCCTCTGGTAAGAAGGTTGGTGTGGGGTCTTTAATGGACAAGGCTTCTGC TCCTCCATTATCTCCTGGCAGCATTTACATGGAAGAGGTTCATGTTAAGGTTAGGGCTATTTAAGTTTCCCTAAATCAGT TTGGGTTCTTGCTTCTTTAGTAGGACACCTTTTGGAGAAACTGCCTGCCCATTTTGAGTAGGTGGCTGTAACTTTGGTAT AATTCCGTTCTTTCTCTGTTATGTAGCTGGGGGAAGAATTATACTTCACTGTTGGCTCTCAACACATTCCTTTTGGTGCA TCCCCACAGGTAAGCTCCATGTTACATACACTAGAAAGTTTGAGCTATGTGTTTAACGGATTATATTCCTGTTCTTTCTT TGTCACCTTATTCTTTATCTGAAGCCAAGTTTGTATTATGCTTCTTGTGTTATGCAGGATGTGTGGACTGAGCTAGGACG TCCCTGCGGTATTCATCAAAAGCAGGTACCCTGAATTACTAGTTATTAAATGAAATAAGGTTATTTTGTGGTAATGTTGT GTGATTAAACTGATATATGTTGCAGTGATGTCTGCTGAATTAGAGTGAACTCTTTCTGCATCTTTATTGTTGGTGTACTG TGGAGAATTGAATATATTAAGATTTATACAATAATATTATTAAGATCTTCGTGGTCATTTCTTGAGTTTTTTTTAGCAAA TATATAGTTCAATTTTAACTTTAAAATGTCTTCTCCCTCTAATGGATCATATGAGGAACTAGGCAATTGGTTTCTGTGTG TTTTAGACTACATCTTTGTTCGGTAACTTAGCTGGCGAGAAATAGAGAGGAAATACAGCCAGTGGGGAAATAAAATTGAT GCAAGAAGGTGCATGTGATCAACCTGTTATTTTTTCCTTCCGGTGTTGAAGAAAATGAACAAAAAATGTGCAGCTTATCT ATTTTCCAAGATTACCCATACTGCTGCCATATCCACATGCTATGCTTTTGTGAATTCTCCTTCTTATGCGAACTGATTGT TCCTTCCAATTTTATACTTGTTTTTCTTTGTTTCTCTCATAGTAGTCAATCGCGGCAAATAGCGGCGCTATCGCGCCGTC GCGTCGCGTCGCGGCCCTTCCCCGCGATTCTGAATCGATCGCGTCGCGGAACGCCGTCGCGGCTGTCGCGCCGCGAATCG CGGCCAAATTGCGTTCAAATCACGTTCAATCGCAGCAAATCGCGGTGCTCCAGGTTGAAGATGGGTCGGGTCCAAGGAAA ATCCCCAAATTGCCCTCAAAATTTCAAAATTAGGTTAAAATTTGAGGGTACTTTTGGGATTTCGCTCTTATAAGTGAAAC GGTGCGTTTCACTCGTCTTCTTCAACGCGTTTCTTCTTCTTCTTCTTCATACGCGTTTCCTCTGCAATCTCCGGTGTCGT TCCTTCAGCTCAGCCCCTTCGACCAGAAGTCCAGAACCCATGGCCACGGCGCAATCTGACAAGCACCTTCCAGGCTCCGG CGACCACCACCCCTGTTTCTCTTGGGCCTTTGTTCTGTTCTGAGTTGCTCTGTTTTTTATCTTCTATTCCTCTATTTTTC TTTCCTTTCTTTTCCTTCTTATTTATTATTCTGTTCTCAAAAATACTTCTCCAGTTCTTCTCCTCTAGTATTCCTCTCTT CTCTATCACTTCATCATGTTATGAATTTGAATTTTGAAGTTATATTTATCACTTTTTAGTAATTATATGTATATATTAAT TATATAATATTATATGTGAAAAATCAAAATAGCGGTCATCCCGCTATCCGCTATCCCGCTATCCCACTTTTGGGGTCGGC CGTTACGCGCCGCGATCCGGGATTGACTACTATGGTTTCTCTTTCCTTTTCTTATTGGAGTTTTTCGACATGCACAGCAG AGAGCTGCATAGTTGTTGTACACTTGTACTTTCTATGGTTCTTGTAAAATGTAGGATATATGGTAGCCTAAGGCTAGATT AATTGCTTGAGGATATGCTTGGAACATATGGACATCTTGTATGGTTTCTCTACCTAATGCTTTAGTAGTAGAAGGTCTTT CTAGATCCACTAGGACACGTGCAATGTAGTTGATAAGTTCTTTTTGGTGGCATTCGTAATTCAGCAGTTCAGATTTCAGA AGACTTGCATTGATCCAAACAAAAGTTATCAAAATAGAGCTTACAGTCAAAATAATATCTGAAGCTAATGTTTCTTCTCG TAATCTTGTTTGCAAGTTAATGGACTAGTTATGTCATTCATTATATATATATATTTAAGGAGGCATAATTTGAACTCTTC CTTGAGCCTTAAGTAACATCGTATTATTTTTAGCTTGTTAAGTGCTTGCATGAGTATTTTGTTTGGGTGGATTCTGATTC TCAATTCTGCAGGTAGATCAAATGGTTATTCATTCTTCCTCAGATCTTCGGCCTCGAACAACTCTCTGTGGAGATTACTT CTATAATTATTTTAATCGTGGTCTTGACATCTTATTTGATGGACAGGTTTGTGTTTACCTCATTGTTCTGTTTATATGCA CTGTGATACAATTGACAATGGAAGCTCCTCATATCTATTGTATTTCAGACTCACAAAATCAAGAAGTTTGTGTTACACAC CAACTATCCTGGTCATGCTGATTTTAATTCTTACATCAAGTGCAACTTTGTTATCCATGGCTCAGATGGTAAGCAGTCTT ATTTGCATTGCAGTATTTAGATTGGTCTTGATGTAACAGTTATGTATATGTTTGTCATGAAAAATGAGATTTTGTTTTCT CCTTTCCAGCAGTGGACGGATCTTTTCAGGAAGTAAATAACAGCAAACAGGGGGCTATTACGCCTAGTACCAAGTGGGAA CAAGTGAAGGTGATCTTTTTGCCTTTCCAAATTGTATGGTTTTCCTTACGGCTGATGTTTCATCTTGGATGAACTTCTTT ACTTGAAATATATGACATAATTTGGGGAAGAAAGTTGTGATTAGATTTGATATGGGTTTCTTATAATGATTCATAGAAGC TTTTATCATATATTCTTTTAGGAAACACTGGGGGATTGTGGGCGAGCTGCCATTCAAACTCAAGGTTCTGCAAGTAACCC TTTTGGTTCCACTCTTGTATATGGTTATCAAAATATTGCCTTTGAGGTGCGTCATTCTTGGTGTTTTTTCCTCCTGCTAA TTCAATAGAGTACCAAGGTGCCTTGAAGAGACTGCTAATCTATATTCTTGTGACCTTTTCAGGTGATGAAGAATGGTTAT ATTGCAACAATAACTCTTTTCCAGTCATGATGGTATGTATCTATGTAAATTTCTACCTTATTTAGATAGCAAGTAATTAT TACCTTAGTTTTTCATTAAACCAACATAGGCTTAGGTTTTCTAATGAAAATTCACCTAACTCAAGGAAATTGTCCTTTTA TCAATGCTAGTTATTGTTTTAAAGATTAAAACAAAATGCTGTTAGTATATGCAGAAAAATTTGCCACATCAGCATGACTG AAGGAAAATTTGTTTTTTTTTTATTAATGCTAGTTGTTGTTTGAAACAAACTGGCTGTTAGTCTATGCAGAAAAATTTAG TTGCCACATCAGCACTGAATGAAGAATGGATGTATGACAACTGATCAAGATGGATCCTCAACGAGAATCATTTGATAATT TTAAGGATTCATTTAGAATCTTTTCAACTAGGACTAATCAAAAAGCTCTACAGACCTCTAGGCTCTAGGGAGCAACATAT AACACTGAAATATGAGCATGTATACATTGCTGCAGGGGCTTTTGGCTACCCCTGATCTTTCTCTGTATTGTTTATTAAGG TTTCTCAAGCTTGGCTATGGAACTTCACACGGAAAAGCTGGCTAGGTTTGTATGATCAGGGTGTATGATAAGTTCAACGA TCATCACCATCATTATCGCCGTGGCAAGGGATATCACAATTGTACAGCTATTGTGATAAATTGTACATATTAAAATTGTA TTGTGTAAATTTTTAACATTTACGTTGACATCTTGTACAAAGCTAATATACAAATTCCTAACGCATTTATCTTTCAGATG GCTTCATGTTGCTAGGTTTTTGAATTCTTTACTCGCTTCAATTGTTCTCAGTCAACCACTTCTCTTCTCCTTTCTTTTCT TGATTGAGTTGTTTCTCCTGATCAAAGCATGCTTGCCTTCTCTCATCAGTAGTTTTCTTTACGTATCTGTCCGTAATCAA TCAAGCGTCTTTTTTGTTGTTTCAATAACCGTGGTGCAATGAATGCAGAGTTTTGTTAGACTGACTTTCCGTTTTGGTAA AAATCCACCACCACCATAGCACCAGTCTCTTCCCATTAACATCGTCCAGATATTGATATGTAGATAAAGTAATATACTAA ATATTAAAATAATCATA
CDS sequence (LotjaGi2g1v0383900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCAGAGACCCAGACGGCGTTGCGAGGGCACAGCCATGGGCGCCATCGTTCTCGATCTCCGTCCTGGTCTCGGAAT CGGACCTTTCTCTCTCGGGATGCCTATATGTGAAGCATTTGCTCAGATAGAACAGCAACCTAATATTTACGATGTGGTTC ATGTCAAGTACTTTGATGAGTCTGAGCATTTACAGGAACCACTCAAGTTGGATATTGTTATTAGCTTTCCCGATCACGGC TTTCATCTTCGTTTCGATCCCTGGTCTCAGAGACTGCGTCTTATTGAAATATTTGATGTAAAGCGGCTTCAAATGCGCTA CTCTACTTCTCTGATTGGGGGACCGTCAACTCTAGCTACTTTTGTTGCTGTATATGCACTGTTTGGGCCAACATATCCTG GAATTTTCGATAAGGATAGAGGCATTTACACTCTGTTCTATCCGGGTCTTTCCTTTGCATTTCCGATTCCAAGTCAGTTC ACAGACTGCTGTCAAGATGGGGGAGTGGAATTGCCATTGGAGTTTCCAGATGGGACCACACCAGTTACATGCCGTGTTTC TATATATGATAGCTCCTCTGGTAAGAAGGTTGGTGTGGGGTCTTTAATGGACAAGGCTTCTGCTCCTCCATTATCTCCTG GCAGCATTTACATGGAAGAGGTTCATGTTAAGCTGGGGGAAGAATTATACTTCACTGTTGGCTCTCAACACATTCCTTTT GGTGCATCCCCACAGGATGTGTGGACTGAGCTAGGACGTCCCTGCGGTATTCATCAAAAGCAGGTAGATCAAATGGTTAT TCATTCTTCCTCAGATCTTCGGCCTCGAACAACTCTCTGTGGAGATTACTTCTATAATTATTTTAATCGTGGTCTTGACA TCTTATTTGATGGACAGACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTATCCTGGTCATGCTGATTTTAATTCT TACATCAAGTGCAACTTTGTTATCCATGGCTCAGATGCAGTGGACGGATCTTTTCAGGAAGTAAATAACAGCAAACAGGG GGCTATTACGCCTAGTACCAAGTGGGAACAAGTGAAGGAAACACTGGGGGATTGTGGGCGAGCTGCCATTCAAACTCAAG GTTCTGCAAGTAACCCTTTTGGTTCCACTCTTGTATATGGTTATCAAAATATTGCCTTTGAGGTGATGAAGAATGGTTAT ATTGCAACAATAACTCTTTTCCAGTCATGA
Protein sequence (LotjaGi2g1v0383900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQRPRRRCEGTAMGAIVLDLRPGLGIGPFSLGMPICEAFAQIEQQPNIYDVVHVKYFDESEHLQEPLKLDIVISFPDHG FHLRFDPWSQRLRLIEIFDVKRLQMRYSTSLIGGPSTLATFVAVYALFGPTYPGIFDKDRGIYTLFYPGLSFAFPIPSQF TDCCQDGGVELPLEFPDGTTPVTCRVSIYDSSSGKKVGVGSLMDKASAPPLSPGSIYMEEVHVKLGEELYFTVGSQHIPF GASPQDVWTELGRPCGIHQKQVDQMVIHSSSDLRPRTTLCGDYFYNYFNRGLDILFDGQTHKIKKFVLHTNYPGHADFNS YIKCNFVIHGSDAVDGSFQEVNNSKQGAITPSTKWEQVKETLGDCGRAAIQTQGSASNPFGSTLVYGYQNIAFEVMKNGY IATITLFQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 110 | 110 | - | – | |
| PANTHER | 17 | 409 | 393 | 1.5E-190 | ||
| PANTHER | 17 | 409 | 393 | 1.5E-190 | ||
| Pfam | 27 | 407 | 381 | 7.7E-135 | ||
| TMHMM | 110 | 132 | 23 | - | – | |
| Phobius | 111 | 128 | 18 | - | – | |
| Phobius | 129 | 409 | 281 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0383900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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