Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi2g1v0383900 |
Transcript ID | LotjaGi2g1v0383900.5 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | UPF0183 protein; TAIR: AT3G51130.1 transmembrane protein; Swiss-Prot: sp|Q9SD33|U183_ARATH UPF0183 protein At3g51130; TrEMBL-Plants: tr|I1J8N6|I1J8N6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0383900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88016357..88021507) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTGCAGAGACCCAGACGGCGTTGCGAGGGCACAGCCATGGGCGCCATCGTTCTCGATCTCCGTCCTGGTCTCGGAAT CGGACCTTTCTCTCTCGGTAATTTCTCATGCCCTATCCCAATTGAACAACTATCTAATCCATTTTCGAATTCCACTTTGT TTTTCTCGAATTCGATTCATGTAGAGTTGTTGTCGTTTATCGATTGAGTTTTTGCTACTTAGGGATGCCTATATGTGAAG CATTTGCTCAGATAGAACAGCAACCTAATATTTACGATGTGGTTCATGTCAAGTACTTTGATGAGGTTTGTAACTTATGA TACTGCTGTTTGTTCTATGTTATTGCTGAGATCACTGACAGTGACTTTTTTTTGTTTCCTGGGAAATTGATTTACATTTA CTTTGATTTCTTATAGTCTGAGCATTTACAGGAACCACTCAAGTTGGATATTGTTATTAGCTTTCCCGATCACGGCTTTC ATCTTCGTTTCGATCCCTGGTCTCAGGTGTTGTGTCTTTCCTCTGCCCCTCATTTTATCAAGTATTTGTTTAGAGAAAAC ATGAGATGATGTGGCTCGGTTAGTGAAATTTTTCTTTGCTGTGTCTTAAATAGGAAGCGCGTAAGTGCTTGATAAGTTAG TACTTTACAATTTATTGGATTGGTGTCTTAGCTATTGCTTTAGTTTTTTTAGTGTTGAGATCTAATTAATAGTTGTCGAA TTACAATTAAATTAGTTTGACTGATATTTGAGAATGCAAATTTAGAAAGTGTATGAAGAGTTCCTGCGGAAAATGAATGG GTTCTGGAAGTCATTGGATTCTCTTTGAAAAGGCTGTAGTTTTTAGTTTGAATTCTGATTGATATGAGAATAATAAGAAT GGAAAGTTGCTTAAGGATCTTGTGGAACTATCCCAATGCAAATGAGAAACTATGTAGCAGTGTAATTGTAGTTTAGAATT TAGCTAAACTTTCTTACTCCAAGTTCATTAAGGGTGGATTACTTGAGCTTGTGTTTTTTCTGCACTAGATCTGTTTCTTT TGTTACAATCATGCGCGCTTTCCCATCACGATGATGCTGCAGTAGAGAAGTTTTATTCATTTGAGCCTGATATTCCTGAT TTGTTCAGCAGTTATGAATCATTTCCAAATTTCTCTTGCTTCTTCTTAAATATTGAACGCTTCAACCTCTGCTGTATGCT GCAGTTTTTATGCCTTTGATCATTTTAAGCTGTTGCACAGTGCCTGTATTCATTGTTAGCCATTTATGACAAGACTTGTT GTGACAAAACTTTCCGTACCATTTCAGAGACTGCGTCTTATTGAAATATTTGATGTAAAGCGGCTTCAAATGCGCTACTC TACTTCTCTGATTGGGTGAGTTTTTGGACTTATAATTTTAATCTCTATATATTGTTACAGACTTAATTGATTGTCTTTTC AACTTCTAGGGGACCGTCAACTCTAGCTACTTTTGTTGCTGTATATGCACTGTTTGGGCCAACATATCCTGGAATTTTCG ATAAGGATAGAGGCATTTACACTCTGTTCTATCCGGTATATATTTGGGACACAAAATTTATTATAGTTGCTGTTAATTTT TTTCTTTCTACAGTTCCACATTAATACTTTCTGAATTATATTTTCCTTGGTTTGGTCTTTAGGGTCTTTCCTTTGCATTT CCGATTCCAAGTCAGTTCACAGACTGCTGTCAAGATGGGGGAGGTATATCATCTTGAAACTGAAACATTGTTTTGAATTT TCTAATTCTAATATGTTAACTTTGTTTCTCTTCATCATGAAAGTGGAATTGCCATTGGAGTTTCCAGATGGGACCACACC AGTTACATGCCGTGTTTCTATATATGATAGCTCCTCTGGTAAGAAGGTTGGTGTGGGGTCTTTAATGGACAAGGCTTCTG CTCCTCCATTATCTCCTGGCAGCATTTACATGGAAGAGGTTCATGTTAAGGTTAGGGCTATTTAAGTTTCCCTAAATCAG TTTGGGTTCTTGCTTCTTTAGTAGGACACCTTTTGGAGAAACTGCCTGCCCATTTTGAGTAGGTGGCTGTAACTTTGGTA TAATTCCGTTCTTTCTCTGTTATGTAGCTGGGGGAAGAATTATACTTCACTGTTGGCTCTCAACACATTCCTTTTGGTGC ATCCCCACAGGTAAGCTCCATGTTACATACACTAGAAAGTTTGAGCTATGTGTTTAACGGATTATATTCCTGTTCTTTCT TTGTCACCTTATTCTTTATCTGAAGCCAAGTTTGTATTATGCTTCTTGTGTTATGCAGGATGTGTGGACTGAGCTAGGAC GTCCCTGCGGTATTCATCAAAAGCAGGTACCCTGAATTACTAGTTATTAAATGAAATAAGGTTATTTTGTGGTAATGTTG TGTGATTAAACTGATATATGTTGCAGTGATGTCTGCTGAATTAGAGTGAACTCTTTCTGCATCTTTATTGTTGGTGTACT GTGGAGAATTGAATATATTAAGATTTATACAATAATATTATTAAGATCTTCGTGGTCATTTCTTGAGTTTTTTTTAGCAA ATATATAGTTCAATTTTAACTTTAAAATGTCTTCTCCCTCTAATGGATCATATGAGGAACTAGGCAATTGGTTTCTGTGT GTTTTAGACTACATCTTTGTTCGGTAACTTAGCTGGCGAGAAATAGAGAGGAAATACAGCCAGTGGGGAAATAAAATTGA TGCAAGAAGGTGCATGTGATCAACCTGTTATTTTTTCCTTCCGGTGTTGAAGAAAATGAACAAAAAATGTGCAGCTTATC TATTTTCCAAGATTACCCATACTGCTGCCATATCCACATGCTATGCTTTTGTGAATTCTCCTTCTTATGCGAACTGATTG TTCCTTCCAATTTTATACTTGTTTTTCTTTGTTTCTCTCATAGTAGTCAATCGCGGCAAATAGCGGCGCTATCGCGCCGT CGCGTCGCGTCGCGGCCCTTCCCCGCGATTCTGAATCGATCGCGTCGCGGAACGCCGTCGCGGCTGTCGCGCCGCGAATC GCGGCCAAATTGCGTTCAAATCACGTTCAATCGCAGCAAATCGCGGTGCTCCAGGTTGAAGATGGGTCGGGTCCAAGGAA AATCCCCAAATTGCCCTCAAAATTTCAAAATTAGGTTAAAATTTGAGGGTACTTTTGGGATTTCGCTCTTATAAGTGAAA CGGTGCGTTTCACTCGTCTTCTTCAACGCGTTTCTTCTTCTTCTTCTTCATACGCGTTTCCTCTGCAATCTCCGGTGTCG TTCCTTCAGCTCAGCCCCTTCGACCAGAAGTCCAGAACCCATGGCCACGGCGCAATCTGACAAGCACCTTCCAGGCTCCG GCGACCACCACCCCTGTTTCTCTTGGGCCTTTGTTCTGTTCTGAGTTGCTCTGTTTTTTATCTTCTATTCCTCTATTTTT CTTTCCTTTCTTTTCCTTCTTATTTATTATTCTGTTCTCAAAAATACTTCTCCAGTTCTTCTCCTCTAGTATTCCTCTCT TCTCTATCACTTCATCATGTTATGAATTTGAATTTTGAAGTTATATTTATCACTTTTTAGTAATTATATGTATATATTAA TTATATAATATTATATGTGAAAAATCAAAATAGCGGTCATCCCGCTATCCGCTATCCCGCTATCCCACTTTTGGGGTCGG CCGTTACGCGCCGCGATCCGGGATTGACTACTATGGTTTCTCTTTCCTTTTCTTATTGGAGTTTTTCGACATGCACAGCA GAGAGCTGCATAGTTGTTGTACACTTGTACTTTCTATGGTTCTTGTAAAATGTAGGATATATGGTAGCCTAAGGCTAGAT TAATTGCTTGAGGATATGCTTGGAACATATGGACATCTTGTATGGTTTCTCTACCTAATGCTTTAGTAGTAGAAGGTCTT TCTAGATCCACTAGGACACGTGCAATGTAGTTGATAAGTTCTTTTTGGTGGCATTCGTAATTCAGCAGTTCAGATTTCAG AAGACTTGCATTGATCCAAACAAAAGTTATCAAAATAGAGCTTACAGTCAAAATAATATCTGAAGCTAATGTTTCTTCTC GTAATCTTGTTTGCAAGTTAATGGACTAGTTATGTCATTCATTATATATATATATTTAAGGAGGCATAATTTGAACTCTT CCTTGAGCCTTAAGTAACATCGTATTATTTTTAGCTTGTTAAGTGCTTGCATGAGTATTTTGTTTGGGTGGATTCTGATT CTCAATTCTGCAGGTAGATCAAATGGTTATTCATTCTTCCTCAGATCTTCGGCCTCGAACAACTCTCTGTGGAGATTACT TCTATAATTATTTTAATCGTGGTCTTGACATCTTATTTGATGGACAGGTTTGTGTTTACCTCATTGTTCTGTTTATATGC ACTGTGATACAATTGACAATGGAAGCTCCTCATATCTATTGTATTTCAGACTCACAAAATCAAGAAGTTTGTGTTACACA CCAACTATCCTGGTCATGCTGATTTTAATTCTTACATCAAGTGCAACTTTGTTATCCATGGCTCAGATGGTAAGCAGTCT TATTTGCATTGCAGTATTTAGATTGGTCTTGATGTAACAGTTATGTATATGTTTGTCATGAAAAATGAGATTTTGTTTTC TCCTTTCCAGCAGTGGACGGATCTTTTCAGGAAGTAAATAACAGCAAACAGGGGGCTATTACGCCTAGTACCAAGTGGGA ACAAGTGAAGGTGATCTTTTTGCCTTTCCAAATTGTATGGTTTTCCTTACGGCTGATGTTTCATCTTGGATGAACTTCTT TACTTGAAATATATGACATAATTTGGGGAAGAAAGTTGTGATTAGATTTGATATGGGTTTCTTATAATGATTCATAGAAG CTTTTATCATATATTCTTTTAGGAAACACTGGGGGATTGTGGGCGAGCTGCCATTCAAACTCAAGGTTCTGCAAGTAACC CTTTTGGTTCCACTCTTGTATATGGTTATCAAAATATTGCCTTTGAGGTGCGTCATTCTTGGTGTTTTTTCCTCCTGCTA ATTCAATAGAGTACCAAGGTGCCTTGAAGAGACTGCTAATCTATATTCTTGTGACCTTTTCAGGTGATGAAGAATGGTTA TATTGCAACAATAACTCTTTTCCAGTCATGA
CDS sequence (LotjaGi2g1v0383900.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCAGAGACCCAGACGGCGTTGCGAGGGCACAGCCATGGGCGCCATCGTTCTCGATCTCCGTCCTGGTCTCGGAAT CGGACCTTTCTCTCTCGGGATGCCTATATGTGAAGCATTTGCTCAGATAGAACAGCAACCTAATATTTACGATGTGGTTC ATGTCAAGTACTTTGATGAGGAACCACTCAAGTTGGATATTGTTATTAGCTTTCCCGATCACGGCTTTCATCTTCGTTTC GATCCCTGGTCTCAGAGACTGCGTCTTATTGAAATATTTGATGTAAAGCGGCTTCAAATGCGCTACTCTACTTCTCTGAT TGGGGGACCGTCAACTCTAGCTACTTTTGTTGCTGTATATGCACTGTTTGGGCCAACATATCCTGGAATTTTCGATAAGG ATAGAGGCATTTACACTCTGTTCTATCCGGGTCTTTCCTTTGCATTTCCGATTCCAAGTCAGTTCACAGACTGCTGTCAA GATGGGGGAGTGGAATTGCCATTGGAGTTTCCAGATGGGACCACACCAGTTACATGCCGTGTTTCTATATATGATAGCTC CTCTGGTAAGAAGGTTGGTGTGGGGTCTTTAATGGACAAGGCTTCTGCTCCTCCATTATCTCCTGGCAGCATTTACATGG AAGAGGTTCATGTTAAGCTGGGGGAAGAATTATACTTCACTGTTGGCTCTCAACACATTCCTTTTGGTGCATCCCCACAG GATGTGTGGACTGAGCTAGGACGTCCCTGCGGTATTCATCAAAAGCAGGTAGATCAAATGGTTATTCATTCTTCCTCAGA TCTTCGGCCTCGAACAACTCTCTGTGGAGATTACTTCTATAATTATTTTAATCGTGGTCTTGACATCTTATTTGATGGAC AGACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTATCCTGGTCATGCTGATTTTAATTCTTACATCAAGTGCAAC TTTGTTATCCATGGCTCAGATGCAGTGGACGGATCTTTTCAGGAAGTAAATAACAGCAAACAGGGGGCTATTACGCCTAG TACCAAGTGGGAACAAGTGAAGGAAACACTGGGGGATTGTGGGCGAGCTGCCATTCAAACTCAAGGTTCTGCAAGTAACC CTTTTGGTTCCACTCTTGTATATGGTTATCAAAATATTGCCTTTGAGGTGATGAAGAATGGTTATATTGCAACAATAACT CTTTTCCAGTCATGA
Protein sequence (LotjaGi2g1v0383900.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQRPRRRCEGTAMGAIVLDLRPGLGIGPFSLGMPICEAFAQIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRF DPWSQRLRLIEIFDVKRLQMRYSTSLIGGPSTLATFVAVYALFGPTYPGIFDKDRGIYTLFYPGLSFAFPIPSQFTDCCQ DGGVELPLEFPDGTTPVTCRVSIYDSSSGKKVGVGSLMDKASAPPLSPGSIYMEEVHVKLGEELYFTVGSQHIPFGASPQ DVWTELGRPCGIHQKQVDQMVIHSSSDLRPRTTLCGDYFYNYFNRGLDILFDGQTHKIKKFVLHTNYPGHADFNSYIKCN FVIHGSDAVDGSFQEVNNSKQGAITPSTKWEQVKETLGDCGRAAIQTQGSASNPFGSTLVYGYQNIAFEVMKNGYIATIT LFQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 105 | 105 | - | – | |
PANTHER | 17 | 404 | 388 | 1.5E-192 | ||
PANTHER | 17 | 404 | 388 | 1.5E-192 | ||
Pfam | 27 | 402 | 376 | 2.3E-137 | ||
TMHMM | 105 | 127 | 23 | - | – | |
Phobius | 106 | 123 | 18 | - | – | |
Phobius | 124 | 404 | 281 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0383900.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…