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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0385900 |
| Transcript ID | LotjaGi2g1v0385900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein REVERSION-TO-ETHYLENE SENSITIVITY1; TAIR: AT3G51040.1 RTE1-homolog; Swiss-Prot: sp|Q9SD42|RTH_ARATH Protein RTE1-HOMOLOG; TrEMBL-Plants: tr|I3T8P7|I3T8P7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0385900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88179650..88181066) extracted from Lotus japonicus Gifu genome v1.2.
AAACAATGGAACCTGAGTTGGATCCCGAGCAGGTGGAGATGATGGAAGGAGGCTTTTCACGAACTATGCAGATTGATCCT AGACGGGCTCGGTTTCCGTGCTCCGTTGTGTGGTCACCGCTTCCTGTGATCTCGTGGTTCATTCCTTTCATTGGTCACAT TGGCATTTGCAGAGAGGATGGTGTCATATTGGACTTTGCAGGGCCTAATTTTGTCTGTGTTGACAATTTTGCTTTCGGAG CCGCCACTCGCTATTTGCAAATTACCAAAGAAAAGGTATATATAAGAATTGATTTTCACCAGATTAAGTGCATGTTTGGA TGGACGGTAGATTTTCACGTTTAGAGAAGATTTGAGTTTAGAGAAGCTATTAGAAATTGGAAGGCCTATACTCAACCACA AAAGCTAGCTCAAGAGTTGAGGTTTGCACAACCCTTATAAACACTTGATTGGCCTTATCTCTAGCCAATGTGGGACTTCT AACAGAAGCTACTTCTAGTAGCTTTTGGGGAGTAGATATATGGTGCTATTTGTTCTCTCCAAGACTCTAGGGTTAATGAC CAACAAACAACATAGCTCGCAGTACTAGTAGTGTTAGAGTGAAGACACCTTTACAATGAGAGATAAAAGGGATGAATCAT CTTCACTCTAACACTAATACTGTGAGCTATGTTGTGTGCTAGTTACTGAGTCTAATCCCGGAGTCTTGGAGAAAACACCA TTGTTTATCATTGGAACAAATCAAGAGACAGAAAGCAAGATTATGCCATTAGACTCTTGCCTCTTTGTGAAACAACATCA AATTGTAACTTCGTGCTTTGATTTTTGCAACATGCTGTGATTTTCACTAGCTGGAACCTTGTGAAAGCTATGAATGAAGA AGACCTTTATTTCAAACTTCTTATTTTTGTGCTACTTGTTAACCAATTGGCTTTCTGCTCCTCAGTTGTTATTATTTCTC TAATGATGTTTGAAATAACTGCCGACAGTGTTGCATCCCTCTAGGCCAGTCTACATGCAAAGATGAGGCACTCTGCACCT ACATGCCGGATGAAACTGGAGGAGAATTGAAGACCTGGGATGATGCGTTACGGAAGAGCACTCAAGAATTCCAACACCGG TCTTATAATCTCTTTACGTGCAACTGCCACTCATTTGTTGCCAACAATTTAAACAGGATGGGATTCCTGTCTCGCGGATG GAATGTGGTGAACCTAGCCATTTTCATTTTATTCAATGGACGTTGGGTCAGCACAGCATCTATGCTACGAACTGTCTTGC CATTTGTGGTTGTATTTTTTCTTGGAGTCACATTGGGGGGCTTCACATTCCTGAAATTTTGGGCCTTGTTCGCTTCGGTT CTTATTGGTTGGTTCCTTCTTGGCACTTACTGTTTCAAAGGCCTGATTCAGTTGTAG
CDS sequence (LotjaGi2g1v0385900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACCTGAGTTGGATCCCGAGCAGGTGGAGATGATGGAAGGAGGCTTTTCACGAACTATGCAGATTGATCCTAGACG GGCTCGGTTTCCGTGCTCCGTTGTGTGGTCACCGCTTCCTGTGATCTCGTGGTTCATTCCTTTCATTGGTCACATTGGCA TTTGCAGAGAGGATGGTGTCATATTGGACTTTGCAGGGCCTAATTTTGTCTGTGTTGACAATTTTGCTTTCGGAGCCGCC ACTCGCTATTTGCAAATTACCAAAGAAAAGTGTTGCATCCCTCTAGGCCAGTCTACATGCAAAGATGAGGCACTCTGCAC CTACATGCCGGATGAAACTGGAGGAGAATTGAAGACCTGGGATGATGCGTTACGGAAGAGCACTCAAGAATTCCAACACC GGTCTTATAATCTCTTTACGTGCAACTGCCACTCATTTGTTGCCAACAATTTAAACAGGATGGGATTCCTGTCTCGCGGA TGGAATGTGGTGAACCTAGCCATTTTCATTTTATTCAATGGACGTTGGGTCAGCACAGCATCTATGCTACGAACTGTCTT GCCATTTGTGGTTGTATTTTTTCTTGGAGTCACATTGGGGGGCTTCACATTCCTGAAATTTTGGGCCTTGTTCGCTTCGG TTCTTATTGGTTGGTTCCTTCTTGGCACTTACTGTTTCAAAGGCCTGATTCAGTTGTAG
Protein sequence (LotjaGi2g1v0385900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEPELDPEQVEMMEGGFSRTMQIDPRRARFPCSVVWSPLPVISWFIPFIGHIGICREDGVILDFAGPNFVCVDNFAFGAA TRYLQITKEKCCIPLGQSTCKDEALCTYMPDETGGELKTWDDALRKSTQEFQHRSYNLFTCNCHSFVANNLNRMGFLSRG WNVVNLAIFILFNGRWVSTASMLRTVLPFVVVFFLGVTLGGFTFLKFWALFASVLIGWFLLGTYCFKGLIQL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 232 | 232 | 6.4E-120 | ||
| Phobius | 1 | 155 | 155 | - | – | |
| PANTHER | 1 | 232 | 232 | 6.4E-120 | – | |
| Pfam | 39 | 88 | 50 | 1.0E-21 | ||
| Pfam | 91 | 176 | 86 | 2.6E-20 | ||
| TMHMM | 155 | 177 | 23 | - | – | |
| Phobius | 156 | 174 | 19 | - | – | |
| Phobius | 175 | 185 | 11 | - | – | |
| TMHMM | 182 | 204 | 23 | - | – | |
| Phobius | 186 | 204 | 19 | - | – | |
| Phobius | 205 | 209 | 5 | - | – | |
| TMHMM | 208 | 230 | 23 | - | – | |
| Phobius | 210 | 230 | 21 | - | – | |
| Phobius | 231 | 232 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0385900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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