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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0386100 |
| Transcript ID | LotjaGi2g1v0386100.4 |
| Related isoforms 11 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WAT1-related protein; TAIR: AT1G75500.1 Walls Are Thin 1; Swiss-Prot: sp|Q94AP3|WAT1_ARATH Protein WALLS ARE THIN 1; TrEMBL-Plants: tr|A0A072UD66|A0A072UD66_MEDTR WAT1-related protein; Found in the gene: LotjaGi2g1v0386100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88199942..88202624) extracted from Lotus japonicus Gifu genome v1.2.
GCCCTTCCTTCACTTTGGGGTGAAATGGAGTGGATGAAAGATTGGATTGAGGAGTGTAGCTAATATTCAATGGCGCATCA CAATCACATGCACGCAAGCAATCCAATTACTAACAGTAGATTAGAGTGTCCATTAACATTTTTGACCCATAAAGCGACAG AAACTATTTATAGATTACTAATAAACACATTGTACTTTGTTTTCTTTTGTCACGACTTACAAGTAGGTAGAACTAAACAA GATTGCAATTATTATAGATCTCTTATCTTCCACTTCCAGACAGTTTTTGCCTCTTGCCCCTGGTCAACCAGTTCTAAACA TTGATCTCCGAGTACCTGCTTCTCTTTTTGGCATTGAACCATCAGTATTCACTATTCAGTACCTGGGAACAAGAGAATAT GGTAGCTGAACGAGCTAAGCTGCACTTAGCTTTAACGTTTTTGCAATTTTGTTATGCAGGAAACCACATATTTGTGAGGA TTGCACTTGATTCAGGCGTCAGCAAGCTTGTATTTCCTGTCTATAGAAACATCACTGCTCTTCTTCTTCTGGGTCCCTTA GCTTATTTTTCAGAGAAGTATGCACTTCAGTTCTATACCATATATAAATGAATTCTGTCATGTTCCCAGTTTCAGCTATC TTACCTTTTTCTTTTTCTTTTTTGGATCTTATTGTTTGCCTCTTTGCAAGGAAAGACAGGCCATCAATAACCAGATATTG TCTTGTCCAATTTTTCCTTCTAGGACTTGTTGGGTATGTATGATCTTTCCATGAAGCTACTCCACTGTATCAATTAATTG GCAATGTTTGTGTAACTTAAAAAGTATTAATTTTGATTCTTGCAGAATAACATTGAAAGAAGGGTTCTACCTTTTGGGTT TGGATAACACTTCACCTACCTTTGCTGCTGCTATGCAGAACTCTGTTCCAGCTCTGACCTTTCTCATGGCTGTAGTACTC AGGCAAGCTATAAAGTTCTTACTTTAAATCCATGTTTCAAAGCTCTTCTATAATTGATTCCAAAGCTAAAATTAATTCTG AGTATAAGTTTTTGTGAGTAGCTTACGAGTGTCAGAATTATTCTCGAAAAAAAAAAGTTGGTCCAGTAAGACGCTTACAA AGTATATGTAGAAATACTTATATGACATTGATCAATTATACGTGAAATGCAGATATGAGAGTGTGCACTTCAATAGGATG GATGGTCTGGCTAAGGTTCTTGGAGTCCTTGCTTCTGTTGGAGGAGCTTCAATCATTACCCTTTACAAGGGACCTACAAT TTATACGCCAAATTTAGCACTGCATCAGGAGCAATTCTTGTCTGTACTCAGGGATGTCACAGCAAAAAACATGAACATGG GTGGCATTTATCTTTTTGGTCACTGCTTATGTTGGTCTGGTTGGATTGTGATGCAAGCATTTGTTCTGAAAAATTACTCA GCTCCACTCACAGTTTCTGCGTTTACTTGCTTCTTTGGTATTGTGCAGTTAATAACAATTGCAGCCTTTTTCGAGAAGGA TCCAAAAGCCTGGCAACTCAATTTTAGTGAAGAGATTTACAGCATTTTGTACTCGGTTTGTAAATCAAACTTAATTGGGT TAAAATTCACTAGCATCCTTCATTAGCATGTTGTTCACTTCATGTTACTATTTCTACCTCTTTACTTAATTTGGTGATCC TAATTGGTTACCTTGACATCAATAAAACTTATTTCAACTATTAGGATCTATTATGTAACTAGTTTTATGTTACCAATTAC ATGTGAAACAAAGCATACCAAGTATTTGATAAAAAAAATAGGCTTGTTTGTATCAGGGTCTGGTGAATTCAGGGCTGGCA GCAGCATTACAGATATGGACTATTGGCAAGGGAGGGCCAGTGCTTGCTTCAATTTATCTGCCCCTACAGACATTACTTGT TGCATTGATGGCATCCATTGTTTTTGGAGAAGATTTCTTCTTGGGAGGGTGGGTTGTTGTGATTCAAGCAACTTCATTTC TTATTGTTATCTTAAAACTTTTCTAATTGCAAAATATGCTTCCACCTACAGGGAGGTCTAAAGTCTAAACTAAAAGTTGG ATTATCTGAGATTAGTTCATGCGTTATCCAAAATGCCTTTGGCTTATGGTATATAAATCTTACTATTTTCAATTTTGAGG TGCAGGATTATTGGAGCTTTCTTAATTATAACCGGCTTATACCTTGTTGTGTGGGGAAGAAGTCAAGAAACCAAGTCTGC CAAGGAGTGCATGAGAGTCCCCATTATTGAGTCAGAGAAACATCCGGAAGAAAAAAGTTACACTGCTTCTCTCATGCAAC AATTGATTCCTACACAAAATGTTTAGAAGATAGAGTTGACTAATTTGTATAATAGTAAAACTGTCAAAGTCCTTTAAGGT GACCAAATATTGCAACATTTTTTTGTTGCAGCAGGGTTATGATTTGTTTCACTAATTCTTGCAACCCTCTACTTTTTTTT TTTATAAATTTGTAATTTATACATATTTCTTTGAGTAAAATACACTCACCCCCCTCAAGGTTTGTGAGAATAACACTTAA CTTCATTCTTATTCAAAATATACACTCCACCCCAATAATAATCTCATAATTACACTTAGCTCAATTCTTCTCTGAAATCT TCACTCCACCCCACCCCTTTAACACCATCCAAAAGATGCTAAC
CDS sequence (LotjaGi2g1v0386100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAGCTGAACGAGCTAAGCTGCACTTAGCTTTAACGTTTTTGCAATTTTGTTATGCAGGAAACCACATATTTGTGAG GATTGCACTTGATTCAGGCGTCAGCAAGCTTGTATTTCCTGTCTATAGAAACATCACTGCTCTTCTTCTTCTGGGTCCCT TAGCTTATTTTTCAGAGAAGAAAGACAGGCCATCAATAACCAGATATTGTCTTGTCCAATTTTTCCTTCTAGGACTTGTT GGAATAACATTGAAAGAAGGGTTCTACCTTTTGGGTTTGGATAACACTTCACCTACCTTTGCTGCTGCTATGCAGAACTC TGTTCCAGCTCTGACCTTTCTCATGGCTGTAGTACTCAGGCAAGCTATAAAGTTCTTACTTTAA
Protein sequence (LotjaGi2g1v0386100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAERAKLHLALTFLQFCYAGNHIFVRIALDSGVSKLVFPVYRNITALLLLGPLAYFSEKKDRPSITRYCLVQFFLLGLV GITLKEGFYLLGLDNTSPTFAAAMQNSVPALTFLMAVVLRQAIKFLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 4 | 121 | 118 | 6.3E-70 | ||
| PANTHER | 4 | 121 | 118 | 6.3E-70 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 8 | 15 | 8 | - | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Pfam | 16 | 119 | 104 | 3.0E-11 | ||
| Phobius | 21 | 38 | 18 | - | – | |
| Phobius | 39 | 57 | 19 | - | – | |
| TMHMM | 39 | 58 | 20 | - | – | |
| SUPERFAMILY | 42 | 119 | 78 | 7.19E-7 | – | |
| Phobius | 58 | 68 | 11 | - | – | |
| Phobius | 69 | 88 | 20 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| Phobius | 89 | 99 | 11 | - | – | |
| TMHMM | 97 | 119 | 23 | - | – | |
| Phobius | 100 | 119 | 20 | - | – | |
| Phobius | 120 | 127 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0386100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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