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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0386100 |
| Transcript ID | LotjaGi2g1v0386100.5 |
| Related isoforms 11 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WAT1-related protein; TAIR: AT1G75500.1 Walls Are Thin 1; Swiss-Prot: sp|Q94AP3|WAT1_ARATH Protein WALLS ARE THIN 1; TrEMBL-Plants: tr|A0A0R0HDH0|A0A0R0HDH0_SOYBN WAT1-related protein; Found in the gene: LotjaGi2g1v0386100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88200047..88202408) extracted from Lotus japonicus Gifu genome v1.2.
TTACAAGTAGGTAGAACTAAACAAGATTGCAATTATTATAGATCTCTTATCTTCCACTTCCAGACAGTTTTTGCCTCTTG CCCCTGGTCAACCAGTTCTAAACATTGATCTCCGAGTACCTGCTTCTCTTTTTGGCATTGAACCATCAGTATTCACTATT CAGTACCTGGGAACAAGAGAATATGGTAGCTGAACGAGCTAAGCTGCACTTAGCTTTAACGTTTTTGCAATTTTGTTATG CAGGAAACCACATATTTGTGAGGATTGCACTTGATTCAGGCGTCAGCAAGCTTGTATTTCCTGTCTATAGAAACATCACT GCTCTTCTTCTTCTGGGTCCCTTAGCTTATTTTTCAGAGAAGTATGCACTTCAGTTCTATACCATATATAAATGAATTCT GTCATGTTCCCAGTTTCAGCTATCTTACCTTTTTCTTTTTCTTTTTTGGATCTTATTGTTTGCCTCTTTGCAAGGAAAGA CAGGCCATCAATAACCAGATATTGTCTTGTCCAATTTTTCCTTCTAGGACTTGTTGGGTATGTATGATCTTTCCATGAAG CTACTCCACTGTATCAATTAATTGGCAATGTTTGTGTAACTTAAAAAGTATTAATTTTGATTCTTGCAGAATAACATTGA AAGAAGGGTTCTACCTTTTGGGTTTGGATAACACTTCACCTACCTTTGCTGCTGCTATGCAGAACTCTGTTCCAGCTCTG ACCTTTCTCATGGCTGTAGTACTCAGGCAAGCTATAAAGTTCTTACTTTAAATCCATGTTTCAAAGCTCTTCTATAATTG ATTCCAAAGCTAAAATTAATTCTGAGTATAAGTTTTTGTGAGTAGCTTACGAGTGTCAGAATTATTCTCGAAAAAAAAAA GTTGGTCCAGTAAGACGCTTACAAAGTATATGTAGAAATACTTATATGACATTGATCAATTATACGTGAAATGCAGATAT GAGAGTGTGCACTTCAATAGGATGGATGGTCTGGCTAAGGTTCTTGGAGTCCTTGCTTCTGTTGGAGGAGCTTCAATCAT TACCCTTTACAAGGGACCTACAATTTATACGCCAAATTTAGCACTGCATCAGGAGCAATTCTTGTCTGTACTCAGGGATG TCACAGCAAAAAACATGAACATGGGTGGCATTTATCTTTTTGGTCACTGCTTATGTTGGTCTGGTTGGATTGTGATGCAA GCATTTGTTCTGAAAAATTACTCAGCTCCACTCACAGTTTCTGCGTTTACTTGCTTCTTTGGTATTGTGCAGTTAATAAC AATTGCAGCCTTTTTCGAGAAGGATCCAAAAGCCTGGCAACTCAATTTTAGTGAAGAGATTTACAGCATTTTGTACTCGG TTTGTAAATCAAACTTAATTGGGTTAAAATTCACTAGCATCCTTCATTAGCATGTTGTTCACTTCATGTTACTATTTCTA CCTCTTTACTTAATTTGGTGATCCTAATTGGTTACCTTGACATCAATAAAACTTATTTCAACTATTAGGATCTATTATGT AACTAGTTTTATGTTACCAATTACATGTGAAACAAAGCATACCAAGTATTTGATAAAAAAAATAGGCTTGTTTGTATCAG GGTCTGGTGAATTCAGGGCTGGCAGCAGCATTACAGATATGGACTATTGGCAAGGGAGGGCCAGTGCTTGCTTCAATTTA TCTGCCCCTACAGACATTACTTGTTGCATTGATGGCATCCATTGTTTTTGGAGAAGATTTCTTCTTGGGAGGGTGGGTTG TTGTGATTCAAGCAACTTCATTTCTTATTGTTATCTTAAAACTTTTCTAATTGCAAAATATGCTTCCACCTACAGGGAGG TCTAAAGTCTAAACTAAAAGTTGGATTATCTGAGATTAGTTCATGCGTTATCCAAAATGCCTTTGGCTTATGGTATATAA ATCTTACTATTTTCAATTTTGAGGTGCAGGATTATTGGAGCTTTCTTAATTATAACCGGCTTATACCTTGTTGTGTGGGG AAGAAGTCAAGAAACCAAGTCTGCCAAGGAGTGCATGAGAGTCCCCATTATTGAGTCAGAGAAACATCCGGAAGAAAAAA GTTACACTGCTTCTCTCATGCAACAATTGATTCCTACACAAAATGTTTAGAAGATAGAGTTGACTAATTTGTATAATAGT AAAACTGTCAAAGTCCTTTAAGGTGACCAAATATTGCAACATTTTTTTGTTGCAGCAGGGTTATGATTTGTTTCACTAAT TCTTGCAACCCTCTACTTTTTTTTTTTATAAATTTGTAATTTATACATATTTCTTTGAGTAAAATACACTCACCCCCCTC AAGGTTTGTGAGAATAACACTTAACTTCATTCTTATTCAAAA
CDS sequence (LotjaGi2g1v0386100.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAGCTGAACGAGCTAAGCTGCACTTAGCTTTAACGTTTTTGCAATTTTGTTATGCAGGAAACCACATATTTGTGAG GATTGCACTTGATTCAGGCGTCAGCAAGCTTGTATTTCCTGTCTATAGAAACATCACTGCTCTTCTTCTTCTGGGTCCCT TAGCTTATTTTTCAGAGAAGAAAGACAGGCCATCAATAACCAGATATTGTCTTGTCCAATTTTTCCTTCTAGGACTTGTT GGAATAACATTGAAAGAAGGGTTCTACCTTTTGGGTTTGGATAACACTTCACCTACCTTTGCTGCTGCTATGCAGAACTC TGTTCCAGCTCTGACCTTTCTCATGGCTGTAGTACTCAGATATGAGAGTGTGCACTTCAATAGGATGGATGGTCTGGCTA AGGTTCTTGGAGTCCTTGCTTCTGTTGGAGGAGCTTCAATCATTACCCTTTACAAGGGACCTACAATTTATACGCCAAAT TTAGCACTGCATCAGGAGCAATTCTTGTCTGTACTCAGGGATGTCACAGCAAAAAACATGAACATGGGTGGCATTTATCT TTTTGGTCACTGCTTATGTTGGTCTGGTTGGATTGTGATGCAAGCATTTGTTCTGAAAAATTACTCAGCTCCACTCACAG TTTCTGCGTTTACTTGCTTCTTTGGTATTGTGCAGTTAATAACAATTGCAGCCTTTTTCGAGAAGGATCCAAAAGCCTGG CAACTCAATTTTAGTGAAGAGATTTACAGCATTTTGTACTCGGGTCTGGTGAATTCAGGGCTGGCAGCAGCATTACAGAT ATGGACTATTGGCAAGGGAGGGCCAGTGCTTGCTTCAATTTATCTGCCCCTACAGACATTACTTGTTGCATTGATGGCAT CCATTGTTTTTGGAGAAGATTTCTTCTTGGGAGGGATTATTGGAGCTTTCTTAATTATAACCGGCTTATACCTTGTTGTG TGGGGAAGAAGTCAAGAAACCAAGTCTGCCAAGGAGTGCATGAGAGTCCCCATTATTGAGTCAGAGAAACATCCGGAAGA AAAAAGTTACACTGCTTCTCTCATGCAACAATTGATTCCTACACAAAATGTTTAG
Protein sequence (LotjaGi2g1v0386100.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAERAKLHLALTFLQFCYAGNHIFVRIALDSGVSKLVFPVYRNITALLLLGPLAYFSEKKDRPSITRYCLVQFFLLGLV GITLKEGFYLLGLDNTSPTFAAAMQNSVPALTFLMAVVLRYESVHFNRMDGLAKVLGVLASVGGASIITLYKGPTIYTPN LALHQEQFLSVLRDVTAKNMNMGGIYLFGHCLCWSGWIVMQAFVLKNYSAPLTVSAFTCFFGIVQLITIAAFFEKDPKAW QLNFSEEIYSILYSGLVNSGLAAALQIWTIGKGGPVLASIYLPLQTLLVALMASIVFGEDFFLGGIIGAFLIITGLYLVV WGRSQETKSAKECMRVPIIESEKHPEEKSYTASLMQQLIPTQNV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| PANTHER | 5 | 343 | 339 | 8.4E-207 | ||
| PANTHER | 5 | 343 | 339 | 8.4E-207 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 8 | 15 | 8 | - | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Pfam | 16 | 133 | 118 | 3.7E-11 | ||
| Phobius | 21 | 38 | 18 | - | – | |
| Phobius | 39 | 57 | 19 | - | – | |
| TMHMM | 39 | 58 | 20 | - | – | |
| SUPERFAMILY | 42 | 136 | 95 | 4.45E-8 | – | |
| Phobius | 58 | 68 | 11 | - | – | |
| Phobius | 69 | 88 | 20 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| Phobius | 89 | 99 | 11 | - | – | |
| TMHMM | 97 | 119 | 23 | - | – | |
| Phobius | 100 | 119 | 20 | - | – | |
| Phobius | 120 | 130 | 11 | - | – | |
| Phobius | 131 | 151 | 21 | - | – | |
| TMHMM | 132 | 151 | 20 | - | – | |
| Phobius | 152 | 184 | 33 | - | – | |
| Pfam | 182 | 320 | 139 | 3.7E-16 | ||
| TMHMM | 182 | 204 | 23 | - | – | |
| Phobius | 185 | 205 | 21 | - | – | |
| Phobius | 206 | 211 | 6 | - | – | |
| TMHMM | 211 | 233 | 23 | - | – | |
| Phobius | 212 | 233 | 22 | - | – | |
| SUPERFAMILY | 219 | 324 | 106 | 1.96E-8 | – | |
| Phobius | 234 | 247 | 14 | - | – | |
| TMHMM | 248 | 270 | 23 | - | – | |
| Phobius | 248 | 269 | 22 | - | – | |
| Phobius | 270 | 275 | 6 | - | – | |
| TMHMM | 275 | 297 | 23 | - | – | |
| Phobius | 276 | 295 | 20 | - | – | |
| Phobius | 296 | 300 | 5 | - | – | |
| Phobius | 301 | 321 | 21 | - | – | |
| TMHMM | 302 | 321 | 20 | - | – | |
| Phobius | 322 | 364 | 43 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0386100.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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