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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0386100 |
| Transcript ID | LotjaGi2g1v0386100.7 |
| Related isoforms 11 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WAT1-related protein; TAIR: AT1G75500.1 Walls Are Thin 1; Swiss-Prot: sp|Q94AP3|WAT1_ARATH Protein WALLS ARE THIN 1; TrEMBL-Plants: tr|I3SVL6|I3SVL6_LOTJA WAT1-related protein; Found in the gene: LotjaGi2g1v0386100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88200091..88202353) extracted from Lotus japonicus Gifu genome v1.2.
ACTTCCAGACAGTTTTTGCCTCTTGCCCCTGGTCAACCAGTTCTAAACATTGATCTCCGAGTACCTGCTTCTCTTTTTGG CATTGAACCATCAGTATTCACTATTCAGTACCTGGGAACAAGAGAATATGGTAGCTGAACGAGCTAAGCTGCACTTAGCT TTAACGTTTTTGCAATTTTGTTATGCAGGAAACCACATATTTGTGAGGATTGCACTTGATTCAGGCGTCAGCAAGCTTGT ATTTCCTGTCTATAGAAACATCACTGCTCTTCTTCTTCTGGGTCCCTTAGCTTATTTTTCAGAGAAGTATGCACTTCAGT TCTATACCATATATAAATGAATTCTGTCATGTTCCCAGTTTCAGCTATCTTACCTTTTTCTTTTTCTTTTTTGGATCTTA TTGTTTGCCTCTTTGCAAGGAAAGACAGGCCATCAATAACCAGATATTGTCTTGTCCAATTTTTCCTTCTAGGACTTGTT GGGTATGTATGATCTTTCCATGAAGCTACTCCACTGTATCAATTAATTGGCAATGTTTGTGTAACTTAAAAAGTATTAAT TTTGATTCTTGCAGAATAACATTGAAAGAAGGGTTCTACCTTTTGGGTTTGGATAACACTTCACCTACCTTTGCTGCTGC TATGCAGAACTCTGTTCCAGCTCTGACCTTTCTCATGGCTGTAGTACTCAGGCAAGCTATAAAGTTCTTACTTTAAATCC ATGTTTCAAAGCTCTTCTATAATTGATTCCAAAGCTAAAATTAATTCTGAGTATAAGTTTTTGTGAGTAGCTTACGAGTG TCAGAATTATTCTCGAAAAAAAAAAGTTGGTCCAGTAAGACGCTTACAAAGTATATGTAGAAATACTTATATGACATTGA TCAATTATACGTGAAATGCAGATATGAGAGTGTGCACTTCAATAGGATGGATGGTCTGGCTAAGGTTCTTGGAGTCCTTG CTTCTGTTGGAGGAGCTTCAATCATTACCCTTTACAAGGGACCTACAATTTATACGCCAAATTTAGCACTGCATCAGGAG CAATTCTTGTCTGTACTCAGGGATGTCACAGCAAAAAACATGAACATGGGTGGCATTTATCTTTTTGGTCACTGCTTATG TTGGTCTGGTTGGATTGTGATGCAAGCATTTGTTCTGAAAAATTACTCAGCTCCACTCACAGTTTCTGCGTTTACTTGCT TCTTTGGTATTGTGCAGTTAATAACAATTGCAGCCTTTTTCGAGAAGGATCCAAAAGCCTGGCAACTCAATTTTAGTGAA GAGATTTACAGCATTTTGTACTCGGTTTGTAAATCAAACTTAATTGGGTTAAAATTCACTAGCATCCTTCATTAGCATGT TGTTCACTTCATGTTACTATTTCTACCTCTTTACTTAATTTGGTGATCCTAATTGGTTACCTTGACATCAATAAAACTTA TTTCAACTATTAGGATCTATTATGTAACTAGTTTTATGTTACCAATTACATGTGAAACAAAGCATACCAAGTATTTGATA AAAAAAATAGGCTTGTTTGTATCAGGGTCTGGTGAATTCAGGGCTGGCAGCAGCATTACAGATATGGACTATTGGCAAGG GAGGGCCAGTGCTTGCTTCAATTTATCTGCCCCTACAGACATTACTTGTTGCATTGATGGCATCCATTGTTTTTGGAGAA GATTTCTTCTTGGGAGGGTGGGTTGTTGTGATTCAAGCAACTTCATTTCTTATTGTTATCTTAAAACTTTTCTAATTGCA AAATATGCTTCCACCTACAGGGAGGTCTAAAGTCTAAACTAAAAGTTGGATTATCTGAGATTAGTTCATGCGTTATCCAA AATGCCTTTGGCTTATGGTATATAAATCTTACTATTTTCAATTTTGAGGTGCAGGATTATTGGAGCTTTCTTAATTATAA CCGGCTTATACCTTGTTGTGTGGGGAAGAAGTCAAGAAACCAAGTCTGCCAAGGAGTGCATGAGAGTCCCCATTATTGAG TCAGAGAAACATCCGGAAGAAAAAAGTTACACTGCTTCTCTCATGCAACAATTGATTCCTACACAAAATGTTTAGAAGAT AGAGTTGACTAATTTGTATAATAGTAAAACTGTCAAAGTCCTTTAAGGTGACCAAATATTGCAACATTTTTTTGTTGCAG CAGGGTTATGATTTGTTTCACTAATTCTTGCAACCCTCTACTTTTTTTTTTTATAAATTTGTAATTTATACATATTTCTT TGAGTAAAATACACTCACCCCCC
CDS sequence (LotjaGi2g1v0386100.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAACTCTGTTCCAGCTCTGACCTTTCTCATGGCTGTAGTACTCAGATATGAGAGTGTGCACTTCAATAGGATGGA TGGTCTGGCTAAGGTTCTTGGAGTCCTTGCTTCTGTTGGAGGAGCTTCAATCATTACCCTTTACAAGGGACCTACAATTT ATACGCCAAATTTAGCACTGCATCAGGAGCAATTCTTGTCTGTACTCAGGGATGTCACAGCAAAAAACATGAACATGGGT GGCATTTATCTTTTTGGTCACTGCTTATGTTGGTCTGGTTGGATTGTGATGCAAGCATTTGTTCTGAAAAATTACTCAGC TCCACTCACAGTTTCTGCGTTTACTTGCTTCTTTGGTATTGTGCAGTTAATAACAATTGCAGCCTTTTTCGAGAAGGATC CAAAAGCCTGGCAACTCAATTTTAGTGAAGAGATTTACAGCATTTTGTACTCGGTTTGTAAATCAAACTTAATTGGGTTA AAATTCACTAGCATCCTTCATTAG
Protein sequence (LotjaGi2g1v0386100.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQNSVPALTFLMAVVLRYESVHFNRMDGLAKVLGVLASVGGASIITLYKGPTIYTPNLALHQEQFLSVLRDVTAKNMNMG GIYLFGHCLCWSGWIVMQAFVLKNYSAPLTVSAFTCFFGIVQLITIAAFFEKDPKAWQLNFSEEIYSILYSVCKSNLIGL KFTSILH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 152 | 152 | 2.3E-89 | ||
| Phobius | 1 | 3 | 3 | - | – | |
| PANTHER | 1 | 152 | 152 | 2.3E-89 | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 4 | 12 | 9 | - | – | |
| Phobius | 13 | 17 | 5 | - | – | |
| Phobius | 18 | 27 | 10 | - | – | |
| Phobius | 28 | 48 | 21 | - | – | |
| TMHMM | 32 | 54 | 23 | - | – | |
| Phobius | 49 | 79 | 31 | - | – | |
| TMHMM | 80 | 102 | 23 | - | – | |
| Phobius | 80 | 101 | 22 | - | – | |
| Phobius | 102 | 106 | 5 | - | – | |
| Phobius | 107 | 130 | 24 | - | – | |
| TMHMM | 109 | 131 | 23 | - | – | |
| Phobius | 131 | 167 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0386100.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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