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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0386300 |
| Transcript ID | LotjaGi2g1v0386300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein SHI RELATED SEQUENCE 1; TAIR: AT3G51060.1 Lateral root primordium (LRP) protein-like protein; Swiss-Prot: sp|Q9XGX0|SHI_ARATH Protein SHORT INTERNODES; TrEMBL-Plants: tr|V7CMW6|V7CMW6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0386300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88227525..88232265) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTGCGGTGAGAAAGGACGAGAGAGGGCAGAAAGGTGCTTGTCGTGACACGTGGGATAACGCCGAGATTAAGATGAGA ATGATAATGGCCGTTGAGATGAGAAGGAGATATTAGAATTAGAATGTTTGTGAAAAAGAAAGAGTGGACTTAACTTACTT ACTATAGTACTACTACTATTAACTCACTCACTACTAGCCTATACTATTACTACTATACTACTCTGTGGCTGTGCAATGAA TTGAATGAATGATAGTAGTGAGTGAGTTGCAGCAAACTCAACCACACAGACAGACACAAAAGGGCAAGTGCTCAGAGAAA AAGCTCACACACTCTGCGATGGGACTCTACACTTAAATTGGAGCAACAGCCTTGGGAGAGAGATAAAGACAAGGGGGGCA TGGCGGCGTTTGCAGTGCCTTCCTTTATCATTCTTTCTTTTTTTTATTAATTCACAATTAATGTCTGTTATTGTTATCGC TGCTATAGCTAGAACATCAAGAAGTGGAAGCGATACAGAAAAAATGCGTTCAATGCGTGATTAACGCTTCGCTTCCCCTA TTACACTGTTTCTCAACAAACCAAACCTTCCAATTTACTCCACCATTTCCCTAACCATACCACTACTAGTACAGTATAGT ACAACTACAATTCAACACAAATACACACAAAAAAAGGAGACATAACCGCACAAAACCTGTTGAATTTCAACAAAATTTTC ATCTACTTAACTCGGTTTCGTTTTTTCACTCTCAATTTTCTCAACCCTAATTTAAGGAAGAATTTTAGTAGTTAGAGAGT GGTAGATGCAGGCTTAAATTTTAATTGTGTCAATACTAATAGTATTTCGAGCTGTTTAATTTGGGTGGTTCCTTACCCAT ACAATAAGTAGAGCCATCCTAGTTTTGGGGCTTGATATGGATTGTGAGAATATTGAAGTGAGAGAAGAATGGCGGGTTTA TTCTCACTAGGTGGTGGTGGCGGAAGAGGGAACGACGCGGAAGATCAACAGCATCACCATCAACAGAACGAGATTCCTCC TCCTCCTGATAGCAGCTTATTCTGGTACAGCAATAAGAATCATGACGACGTCGTTTCCTCTTCTTACAGAGGCTTTGAGA TATGGAACCAGCAGCAGCAACATCTGGTCCCTGCTCAGCCGCAACCACGTGCTTTCTTCCAACAAGCTGATCTGTACACC TCCGCCGCGGCGCTAGGTGTTGGGCCGTCGGAGGCGTCGAGATCGGGGAAGAGCGGCGGAAGTGGAGGTGGAGGAGGAGG GGCGAGCTGTCAGGACTGCGGGAACCAGGCGAAGAAGGATTGCCCTCATGTGAGGTGCAGAACTTGCTGCAAGAGCCGAG GGTTTGATTGCCAAACGCATCTCAAGAGCACTTGGGTTCCCGCTTCGAAACGCCGCGAAAGACAACAACAGCAGCAGCAG CAGCTTGTTCCTACAAGGCAGCAGAGAGATCATGGTCATAACGTTCACAACCCCACCTCTTCATCACTCGCTTGCACTCT TCTGCCTCCAAACCCTTCACACTCAGGTACATATACACATACATACTCACTCACTCACTCACTCATGTTTATTCTTGTTT ATGTTGCTTTGATTTGTCTTTTCACACTATAGCACCCACAGTTTCTCTGATTGGCTCATCGTGAGTGAAACTGAAAAATA AATGTGATGCAAGAGAACAGAATCCTGCAGAGTGCAGAGAGTGAAAGAGAGAGGGAAATTCTGTGAAAAGATATGTGGAG GGAATTGGAGATAATGGCTTTGGAAGCATGCTCCAAAGGAAGATCGGTTGCGTGTGATTTGAAGCAAAATTTTAACTTTT TTTCTTTTCCAAAAACAACACTGTTGTGTGGAATCCCTGACGATCCAACAGTTTGACAGGCATGGAAGAACCTGTTTTCC CTCAGAGCCTGTCCTCTTTCTTTCTTTCCTAACACCCACTTCACTTTCACTTTCTTCTGAAATTGTTCAATATTATATCA ATTTATGTGTATAGGGAATTTTGTTTTTTTTTTTTGATTAACTAATGGTTCTTGTTTTGCTCTCTGTAATTACATGTGAA ATAAATAGGAGGGTTAGAGGAGGTGAATTTCCCTGCTGTGGTGAGCACTCCGGCGGAGTTCAAGTGTGTGCGGGTTAGCT CCGTGGATGAGGCGGATGAGGAGTACGCTTACTCAACGGCTGTCAACATTGGAGGCCATGTCTTCAGAGGAATTCTCTAT GACCATGGGCCAGACGGCAATAGTTACACGGCTGCCGGAGCTGGGAGCAGCTCCTCCACCGGTGGTGGGGTGGTTCAGCC ATTGAACCTTATTTCAGCTGCCGGGAACACCACTGCTGTTGGGGCAATTGTCGATCCTTCTTCCTTGTATCCGGCTCCCC TTAACGCATTCATGCCTGCTAGTGGTACGCAATTCTTCCCCCACCCAAGACCTTGAACAAAACAATGAAAAAACCTCAAA GAAAACAAAAACAATGATGTTTTGTTTTGTTTTATTTTGTTTCATGTCATTAATTGTTTTGGTGTATTCCCTCCCTAGTT ATCATTCTTCTACGCCCCCCCTCCCACCATCTGTTTTTGTTTTTCTTCTGCCATTTCATGATCTTGTAGTGAATTAGCAT TATTTAATAAATTTGATACGTATTTAAGTAGGAGAGAAAGAAAGATATTAGAAAGGAAAATGATCGGTAAACATTTGCGT ACACACAAATATCGAATGGATCCAACCGACATCCAAATGAAAAATAAAGAGAAAATTGAGGTGTTTGTTGGATATCGTTC TATTTGTATATTTGAGGATTGCATTAGAAACAAGAGAAAATGCTGAAGTACTTGCTTCTCTTTGTTTTTGTGTTATGGAT GGATCATGGATGCATAGTGTATGTTTACTGTAAAAAATCTCAATGAGCTAAAATCATAGTGAGTAGAAGTAATTTTTCTT AATTTCTGTGCTCCTCACAGTGATTGTTTTTGAAAAAAATGTATCATTCTTCTTGTTTCTCCTTTCTTGATGATAAGGAT AACTATAACTAACTAAGCTATTTAATTCGTTCATTTCTCCGTACGGTATTATGGACATCTGGCTCTATGAAACCGCGTCT TTAATTTATATATTATTTATTGGGGCTGGTTTTCCTTTCTAGTTGAATTCTATCACATTTTCTGGTTGATTTTCAACTTC GATGCTGCTTTTCCCCGTTTATCCGTATGATTGCCGGTTAGAACTTGAGCTGGATACACAATTTTGATCTTCTAGTTTCG TTTTCTATTTCTATATTTATATATATATGGGTATGGGCGGTCCAACCATGCATGAGCTGCTTTCAAGTTTAGAAGGTGAA AGATCTCTATCCCTATTCCCATGTGATACTCTAATTCTATTATCTTATTCATTGCCAAACTTTGCATAGATGTGACGTTG ATTACTAATGAGGAAATATTGTTTATCAATGTGCTCATATTTAATGCACATGCAGGAAACTACACGTATATAGGGGAACA CTCCATTTTTTCTTATCTATGGAGTACAGCATATATATCATGCTGCATAATAGTAAACTGTTGCTTGATCAAACAACACT AAAATAAGTAAACACAAGAAGAATGGCTAGAATGTGTCAGCATTTTCAGTAACCTTTTGATGCAACATGTCTCTCTTCAT CAGTGCCCATCCTTGTGCTCTGATCAGTTCCCATAAACCAATTTTTCTATGATGAAATCATACTTGATATCTTGCTATAC ATGGTAATGGGGTGTTGCCAAAACACTTCTTTAATTTAAACACTCTCCAAACACTTTTCATGTGATTGATTTATTTTTAA AAAAGTTAACACATTTTTTTGCAGTGTAAAAAGATTGTTGTCTTTACTTAAAAATTAAATTAATCACATGAGGTGGGCCG AAGAGAATATTCAAATGAGTATCTTGTTAACATTTCTCTTTAAAAAAAAATTCTCATATACGTTACAACCCTAATTACAT AATCTATAAATAATAAATAACTTGCATTAAAAGTCAACTATTTTTAACAGTCCTCATTGTCTCTCAAGTTAAACTATTGG TAGACACTCCAATTGTTGTTTTTATCATGTTGTGAATGTGAACCACAATATATTCTTGTTTATATATATAAATATTTTAT TTTAGTACTTTTCAGATTTCAAGATTTGATTTGGGGTGGATATATAAGTTGGAAAAGAAGTTTAGAGAAAAGACTATAAT GCATTTCTTTATTTTTTTTTATTAATTTGTCTTTTCCTGGTGATTAACAATAGCATTAATTTTCATAGGGAAAACTTTGC TTTGATAAAATGAAGTTATAGCACATATGGCATGTTCTAAGTTGGTATATAATTTTGCTTTATTTAAATATAATAATCCT ATTCAGTTTTTTACTTTACCAATTTCACTCTTAAATATCAAGCTCTCCTTTGGAGATACTGACAAATGGGTAGCTTTCTA TAAAGTTTGAATGTCCTAGTAAACTTAGTGATATTGCTTCTTTTTTTATACATCGGGAAGATTTACTCCATCGAGTGATT TATTCCTGGATTTTTCTCTCCTTAACTCATATGTCATCGAACTCTTTTACTTGAGCTATCATTCGAGGATTATATTGTTT GTAAATAAAATGAAATAACTGTTATGAGTTTAATGGATATGCACTGACAGTGTAAAATAGTTTTACACAGTCATCCAATT GAATTCCGCCAAATCAGAAAA
CDS sequence (LotjaGi2g1v0386300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGGTTTATTCTCACTAGGTGGTGGTGGCGGAAGAGGGAACGACGCGGAAGATCAACAGCATCACCATCAACAGAA CGAGATTCCTCCTCCTCCTGATAGCAGCTTATTCTGGTACAGCAATAAGAATCATGACGACGTCGTTTCCTCTTCTTACA GAGGCTTTGAGATATGGAACCAGCAGCAGCAACATCTGGTCCCTGCTCAGCCGCAACCACGTGCTTTCTTCCAACAAGCT GATCTGTACACCTCCGCCGCGGCGCTAGGTGTTGGGCCGTCGGAGGCGTCGAGATCGGGGAAGAGCGGCGGAAGTGGAGG TGGAGGAGGAGGGGCGAGCTGTCAGGACTGCGGGAACCAGGCGAAGAAGGATTGCCCTCATGTGAGGTGCAGAACTTGCT GCAAGAGCCGAGGGTTTGATTGCCAAACGCATCTCAAGAGCACTTGGGTTCCCGCTTCGAAACGCCGCGAAAGACAACAA CAGCAGCAGCAGCAGCTTGTTCCTACAAGGCAGCAGAGAGATCATGGTCATAACGTTCACAACCCCACCTCTTCATCACT CGCTTGCACTCTTCTGCCTCCAAACCCTTCACACTCAGGAGGGTTAGAGGAGGTGAATTTCCCTGCTGTGGTGAGCACTC CGGCGGAGTTCAAGTGTGTGCGGGTTAGCTCCGTGGATGAGGCGGATGAGGAGTACGCTTACTCAACGGCTGTCAACATT GGAGGCCATGTCTTCAGAGGAATTCTCTATGACCATGGGCCAGACGGCAATAGTTACACGGCTGCCGGAGCTGGGAGCAG CTCCTCCACCGGTGGTGGGGTGGTTCAGCCATTGAACCTTATTTCAGCTGCCGGGAACACCACTGCTGTTGGGGCAATTG TCGATCCTTCTTCCTTGTATCCGGCTCCCCTTAACGCATTCATGCCTGCTAGTGGTACGCAATTCTTCCCCCACCCAAGA CCTTGA
Protein sequence (LotjaGi2g1v0386300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGLFSLGGGGGRGNDAEDQQHHHQQNEIPPPPDSSLFWYSNKNHDDVVSSSYRGFEIWNQQQQHLVPAQPQPRAFFQQA DLYTSAAALGVGPSEASRSGKSGGSGGGGGGASCQDCGNQAKKDCPHVRCRTCCKSRGFDCQTHLKSTWVPASKRRERQQ QQQQQLVPTRQQRDHGHNVHNPTSSSLACTLLPPNPSHSGGLEEVNFPAVVSTPAEFKCVRVSSVDEADEEYAYSTAVNI GGHVFRGILYDHGPDGNSYTAAGAGSSSSTGGGVVQPLNLISAAGNTTAVGAIVDPSSLYPAPLNAFMPASGTQFFPHPR P
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 34 | 34 | - | – | |
| PANTHER | 1 | 320 | 320 | 1.6E-116 | – | |
| PANTHER | 1 | 320 | 320 | 1.6E-116 | ||
| MobiDBLite | 92 | 113 | 22 | - | – | |
| Pfam | 111 | 255 | 145 | 9.6E-60 | – | |
| TIGRFAM | 113 | 155 | 43 | 2.2E-26 | ||
| MobiDBLite | 151 | 193 | 43 | - | – | |
| MobiDBLite | 151 | 195 | 45 | - | – | |
| TIGRFAM | 207 | 254 | 48 | 4.7E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0386300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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