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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0389600 |
| Transcript ID | LotjaGi2g1v0389600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger-homeodomain protein 1; TAIR: AT2G18350.1 homeobox protein 24; Swiss-Prot: sp|Q9ZPW7|ZHD6_ARATH Zinc-finger homeodomain protein 6; TrEMBL-Plants: tr|A0A1J7G2W1|A0A1J7G2W1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0389600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88548405..88552068) extracted from Lotus japonicus Gifu genome v1.2.
AAACAATTAGAATTTTACATGTTGATTTCATAAAATTTCACCGTGTCAAATTCAACTTTGGTTGCCCATGTTGAGTTCTA CAGCAAATCCATATGTACAATTAGTGAACATGTAAAAGGTTACATGTAAGAAGATTCTTGTAGTCTATCTCTTTGATTAG TCTCTCTCTCCCTTTATATGCTGTTTGAGGACACACATTGATTTGAACTAGGGTAGTAGAGAGTGGCTGAGAAGGGCAAT AATTAAAAACTGGACCAGGGTGGTGCAGAGGACCAACATGACCTTGTCGGTTGTTCTGCAAGACAAATTCTTGTCATCAC TCATAATTCTCAGTGCAAAACAACCGCTCCCCTAAACCTAGCTATCTACTCCCTTGTTCCTTTTGGTTTATATGGTGCTG GATGGCTGGTAGGAAGCAAACAACCCTTCCTTCTAGACCCTCTTCCCACCACATATTACTAACAGTACCTTTTCATTTCC CAACCCCACTTTCTCATTCTTAATCAATGTTAGTAAGTCCTTACCAGAATACCAGGTGTTGTTGGCATGCAATTAAGCTA GCTTTCTACTCTTTACATATCAGTCTCTATTTCCTATTCTAGCAGCTGAGGTATGTTAATTTCCTAGGGACCCCAGTTAT CATTTCTCTCTTGCTTGATTTTCTACCTTTCTTTTTATCTTTTTTAGGAAGTTGTTTTAAAACTATTCTTTTCTATACCA GGAGTGCTATATAAACAGTCTTATGCCTGTGAGAATAAGATTTGATTAGTGAAAATTTTGTTAGTGGGATTAGCATCCAG AGTGTCAATATCAGAATAAAACCAAATTAAGAAAACAAACAATTGTGGGCGTGCTTGATACTACTACTAATTACCTCTTT GATTGGGCCTGTTCTTTGATTAGATGGGGATAAATCAGAATTAGGGTTCAGCAAGATCCACAACAACCACAAGCAAAACC AAAGAAGAAAATCACAAAGCTCTTGATATGGTTTAAGGAATATTATGCATAATTGGATCTTGAACAGTTTCAGTGAAAGG ATTTGATGGAAGCAGTGAGAGGACAAGGTAGTAAGGACATAGAAATTATGTCAACAGCAACAACAACCACTTTAGGTTAC AATCTTCCCATCAGAAATTCTTCATCTTCTTCTTCCAAGCTTTCTTCTCCAACTGCAGGACACAGAACAAGTACTGATCA ACCTGCTCCAGTACCAGTACCTCATACCAACAACAACACATTAATCTTCAATGATTCAGCTCAACCTTCACACCACCACC ACCATCTTTCTGCACCACCACTACCTCAAACTCAAAACCACCACCATCAATCTCAGAGACCCACCACTACAGATCCAGAT CTAACCCCATCATCTTCCCCTCTAGCCACAACAAGAATCACAGCACCACCACCACCACCACCAACACCGTTGGTCAGATA CCGAGAATGTCTGAGAAACCACGCGGCGAGCATGGGGAGCCACGTGGTGGACGGTTGCGGCGAGTTCATGCCAAGTGGAG AAGAAGGCACCGAAGCACTCAAATGCGCCGCTTGCGAGTGCCACCGCAATTTCCACCGGAAAGAGGTTGAAGGTGAACAG CAAGTCCCCAATCCCAGTTTCCACTCCTATTACAAGCACAGCAACGGCCACCTTCAGCTTCCTGCACCACAACCGCTGCC ACCGCCACAAAACTCTTCTCTTAGATTTTCCCACGCGGCGGCGGGTACTACTCCTACGGCGGGTCCGGTTCCAGTTCCGC CGTTGATGATGGCTTTCGGAGGCGCTGCCGCGGAGTCGTCGAGCGAAGATCTGAACATGTTCCAGCGTAACGCGGGAGCA CAGGAGGCGGCGGCGCTATCGAGGAAGAGGCATAGGACGAAATTCTCGAGCCAGCAGAAGGATAGGATGATGGAGTTTGC TGAGAAGATTGGGTGGAGGATCCAGAAACAGGATGAGGAAGAGGTGCAGCAGTTTTGTTCTCAAGTGGGTGTGAGGAGAA AGGTTTTCAAGGTTTGGATGCATAATAACAAGCAAGCAATGAAGAAATTACACCAAATGTAAGAGTTTTGTTGTACTATT TTCTCTTCATTTTTTTCCAGGACTTGTCACTACTGTGTTTGTTTGAAAAGCAATAAGGGAAAGAGGCAACAGATTTTGAA TGAATAATAAGTAGATTAGGATGTGCATAATCAAACAGAGGAAGATAGATAGCTGGCTAGAGATATATTAATTGTAACAG CTATAACATTCCATCATGTTACTCATTTTCTCATTTGTATGTTCTTCTTCAATTAACATATTTGATCATTATTCAATTTC AATCTATGCAATATAATCTTGTTTAAAGTATATAGGTTTACATGAACATAGGCAATATATCTGCACTGACTTTTTGGGTG CAGAAAATTATGCATGAGAACATTCTCAGTTTCTCACCTCTTTCTCCATTTGGATTTTGGACATGGTATTGGTAGCCAGG TTCAAAATCACAACAACTATAGGTTGCCATAACATTTGTGTGTTCGTAAATCCTTCTACAATTAATTTTAGAGATAAATT TGAAGGAAAAAGAAGCTGATTCATCTGTATAGGTTGTTGAGATGGGATGAATTTAGGATATCATGAGCAACACTTAGACT ATTGATTACAATATTTCATGCGTAATTCTTTGAGCCCTTTTGTATTTAAACATGGAACCGTCGAATAGTCAACATGTGCA GTTCTTTGGTAATCAGCATTGAAGGGTTTGAAGAAAATAGGATCCCACGCCACACTACTATTTTTGTCCTCTCAGAGTCA TTGCGTAGGACAGTAGGAAACCAACACATCAATATTAGCAGACAATACCCGTTCTTTTCTCAATTTGACGTTTTGAAAGT TAGTGTGTTCAATATTGTCTTCTGGTCCAATATAGGTTGACATACCTAGCTAGCCGCATGACTTGAGTTTGAGCCTCACC CCTTAGAATGTGGATTTGAATCCCGTGCGAACAACAATCTTGAATTGGTGGACATTCATGACATTGATCAAGTGCTCTTA CGCCGAAGATGAACAAGGCTAAGCGATATGCTGAAATTGTGGCGAAGTGATTTGGTGAAATTGCGGGATGCAAAATTGAA TCGTTAGGGAGAGATACTATGCCTCACCAACACGCTGCAGAGTGAGCTTCTGTTGGCCTCTACATGAATAATAGAGGAAA CAATCCTCTCCCGCCAAATATCACCGGTAGTATATCATTGACATCATGTATGATGTGTCTGGAGATGCCTCCCCAACTCT TTCAACTTTTGTATCCAAAAAAATTTATTTTGTCTATACTCAGACACTTTAACCAAATGGGACTGAAATCATCTATCATA ATTAGGTGTCTTGTCATACCACAAATTTTATCATAATCATTGAAAATTCACTCATATAATGTTATAATTGGCATACTCCT ATCTACATGTCACAAGTTAATGCATTGGAATAAACACACCAAATAAAAACATAGATCTTCTTCCACCATGACAAAGTAAA CAAGGAGAAGGGGGCCGGAGGATACACAAATTTCACCCTTCAAACGCTTTACCCCCATTCTTGGATACCATTCGCTTCCA CAATGAAAACACCACATGGAGAAAGTATATCAAGTCCTTTTTGTGCAAGAAAGGGAAACCAACT
CDS sequence (LotjaGi2g1v0389600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCAGTGAGAGGACAAGGTAGTAAGGACATAGAAATTATGTCAACAGCAACAACAACCACTTTAGGTTACAATCT TCCCATCAGAAATTCTTCATCTTCTTCTTCCAAGCTTTCTTCTCCAACTGCAGGACACAGAACAAGTACTGATCAACCTG CTCCAGTACCAGTACCTCATACCAACAACAACACATTAATCTTCAATGATTCAGCTCAACCTTCACACCACCACCACCAT CTTTCTGCACCACCACTACCTCAAACTCAAAACCACCACCATCAATCTCAGAGACCCACCACTACAGATCCAGATCTAAC CCCATCATCTTCCCCTCTAGCCACAACAAGAATCACAGCACCACCACCACCACCACCAACACCGTTGGTCAGATACCGAG AATGTCTGAGAAACCACGCGGCGAGCATGGGGAGCCACGTGGTGGACGGTTGCGGCGAGTTCATGCCAAGTGGAGAAGAA GGCACCGAAGCACTCAAATGCGCCGCTTGCGAGTGCCACCGCAATTTCCACCGGAAAGAGGTTGAAGGTGAACAGCAAGT CCCCAATCCCAGTTTCCACTCCTATTACAAGCACAGCAACGGCCACCTTCAGCTTCCTGCACCACAACCGCTGCCACCGC CACAAAACTCTTCTCTTAGATTTTCCCACGCGGCGGCGGGTACTACTCCTACGGCGGGTCCGGTTCCAGTTCCGCCGTTG ATGATGGCTTTCGGAGGCGCTGCCGCGGAGTCGTCGAGCGAAGATCTGAACATGTTCCAGCGTAACGCGGGAGCACAGGA GGCGGCGGCGCTATCGAGGAAGAGGCATAGGACGAAATTCTCGAGCCAGCAGAAGGATAGGATGATGGAGTTTGCTGAGA AGATTGGGTGGAGGATCCAGAAACAGGATGAGGAAGAGGTGCAGCAGTTTTGTTCTCAAGTGGGTGTGAGGAGAAAGGTT TTCAAGGTTTGGATGCATAATAACAAGCAAGCAATGAAGAAATTACACCAAATGTAA
Protein sequence (LotjaGi2g1v0389600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAVRGQGSKDIEIMSTATTTTLGYNLPIRNSSSSSSKLSSPTAGHRTSTDQPAPVPVPHTNNNTLIFNDSAQPSHHHHH LSAPPLPQTQNHHHQSQRPTTTDPDLTPSSSPLATTRITAPPPPPPTPLVRYRECLRNHAASMGSHVVDGCGEFMPSGEE GTEALKCAACECHRNFHRKEVEGEQQVPNPSFHSYYKHSNGHLQLPAPQPLPPPQNSSLRFSHAAAGTTPTAGPVPVPPL MMAFGGAAAESSSEDLNMFQRNAGAQEAAALSRKRHRTKFSSQQKDRMMEFAEKIGWRIQKQDEEEVQQFCSQVGVRRKV FKVWMHNNKQAMKKLHQM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 334 | 314 | 2.3E-99 | – | |
| MobiDBLite | 21 | 130 | 110 | - | – | |
| MobiDBLite | 21 | 72 | 52 | - | – | |
| PANTHER | 21 | 334 | 314 | 2.3E-99 | – | |
| MobiDBLite | 84 | 116 | 33 | - | – | |
| Pfam | 130 | 181 | 52 | 4.6E-29 | ||
| TIGRFAM | 131 | 181 | 51 | 7.3E-28 | ||
| ProSiteProfiles | 132 | 180 | 49 | 26.012 | ||
| MobiDBLite | 182 | 218 | 37 | - | – | |
| Gene3D | 259 | 334 | 76 | 2.5E-29 | – | |
| SUPERFAMILY | 263 | 334 | 72 | 1.45E-18 | ||
| TIGRFAM | 273 | 330 | 58 | 5.2E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0389600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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