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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0391600 |
| Transcript ID | LotjaGi2g1v0391600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyol transporter; TAIR: AT4G36670.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q8GXR2|PLT6_ARATH Probable polyol transporter 6; TrEMBL-Plants: tr|I3T137|I3T137_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0391600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88756202..88759260) extracted from Lotus japonicus Gifu genome v1.2.
CACGATTTCCTTTCTGAAGCAATATTCACTCACTTAACCAACAATAAAAAAATACTTAGCGCAATGGGCTCTTGACTTCT GCCAAATCAAGGTCCCTCTCTATTTAAGAGTCGTCACTTTTAGGCTCTTTCAATCATACAAGCAGGATAAAAAAGATGTC CATGAAAAATGAAACAAATGTGGTGCACATGGAACTGGAAGATGGTGTGAACGAGAAGAGTCGTAGAAAGCTCAACACGT ATGCTTGTGCTTGCGTGATGGCCGTCACTATTATATCTGCCATATTCGGTTATGGTGAGTGATTTTACATTTTTTCTACT TGCCATTCATTAGTGTTTGTTTAATGACAAGTATTGAAGATATGAAGATTTTGAATTCTTTTCTTTTAATGCAAAATAGC ATTTAATTTGTTGCATGAAGTATGAAAAATTGGGAGTATTAATGTAGTGAATCGGAAGTCTAAATTGTAAGATCTTCAAG TAGTTGCATATTTGATTTTTTAAAATAAAGTTTCAAGTTTTGAATCTTCTAAAGTAATTTCGATGAAAAAGTTAATTCCA CCAAAATGTAAGAAAATGATAAATGAAGAAGACTCAAGTGATGTCCTAACAAATTCTTCTACATAAACACTGTCTAGGGA TTGAATTTTAGACAATATGCTTAAAAAATTTAACAAACGATAAAATATTAAAATCAGCTAATAAGCAATATCATTTTTCA GTTACTGGAGTAATGGCTGGAGCACTCTTGTTCATCAAGGAAGAGCTTGGAATCAATGACATGCAAGTCCAGCTCCTAGG AGGTATTTTAAACGTGTGCGCATTACCGGCATGCATGGTTGCCGGAAGAACATCCGACTACGTCGGCCGCCGCTACACCA TCATTCTATCCGCCGTAATCCTCTTATTGGGCTCCATTCTTATGGGCTACGGCCCATCTTTCCCAATCTTAATGATAGGA AGATGCACTGCAGGCTTTGGTGTGGGCTTTGCACTGATCATAGCCCCAGTATACAGCACAGAGATTTCACTTCCTTCAAA TAGAGGCTTCCTCACTTCCCTCCCTGATGTTTCACTCAATGTGGGACTCTTAATTGGCTATGTCTCAAACTACTTCCTTG GGAAGTTACCCTTGAAACTTGGATGGAGATTGATGCTAGCAATTCCAGTGATTCCTTCACTTGTGCTGATCATTCTCATG TTAAAATTGGCAGAGTCTCCGAGATGGTTGGTAATGCAGGGACGCGTAGGCGAGGCGAGAAAAGTGCTTTTACTTGTCTC TAACTCAAAGGAAGAAGCAGAACAACGGTTGAAGGAAATAAAAAGTGCTGTGGGGATTGATGAGAGCTGCACCAAAGACA TTGTCCATGTTCCCGAGAAAACTCGCAACGGCGAGGGAGCTTTGAGGGAATTGTTTGTTAAGCCTTCGCCTCCGGTGCGC CGGATACTAATTGCTGCAATTGGAGTTCATGTGTTCCAGCAAATTTGTGGGATTGAGGGGATTTGTATATACAGTCCAAG GGTGTTTGAGAAAACAGGAATAACAAGCAAGAGTAATCTCCTTCTAGCCACAGTTGGTTTAGGAATCAGCCAAGCTGTGT TCACATTCATTTCAGCTTTTTTGTTGGACAGAGTTGGGAGGAGGATTTTGTTGCTGATTAGTTCAGGGGGTGTGGTTGTG ACATTGTTGGGTTTGAGTTTTTGTTCATTTATAATGCAGCAATCCAAAGAAGAACCCTTGTGGGGGATAAGTTTTACCAT TGTTGCTATCTACATCTTTGTGGCTTTTGTGGCTATTGGGATTGGGCCTGTGACATGGGTTTACAGCTCTGAGATATTTC CACTGAGGTTGAGAGCACAGGGTCTTGGTGTGTGTGTGCTTGTGAACAGGCTTGCAAATGTGGCAGTGCTTACCAGTTTC ATTTCAATTTACAAGACAATAACAGTGGGTGGGAGTTTCTTACTGTATACTGTTATCACTGCTTGTGCTTGGTGGTTCTA CTATTCCTACTTGCCTGAGACTAAAGGAAGATCATTAGAAGATATGGAGTCTATTTTTGGGAAAAATTCCAAGCCAGAGA AACAAATTAATGCAGCCCAAGTTAACAATGGATAGTTGATGGGGCATTAGAGATGATTTGGCCGACGATACCTATCGATG GTACTAGCTAGCTGACCGAGCACACGCAGACTGAGTTAGCCACCGGCTAAGGAAAACGTTCATTTCCATGGATCTCATTA ATTAGGTTTCCTTGATTCTGGCTCCTTATATAATTATAATTGTGTAATCCCCTTCTCCAAAACATAAATGTGATCTCATG ATCCTCACTTCCACATTAGTAACCATTGAAGAGGCCCTAACTATATAAAGGAGCCTCATACTTATCTTTGAATTAAAGTA ATTAAGCAAATAGTAGTTGAGAGTTCGATTCCCAACTCTTATTATTCACGAAAGTGAACTGTGAATACCGAGTTTAGAAC ATTGAAGAGAGAATTCTGAACTCAGTTTGTTTAATTCTAGTGAATCTCTTCTCTTCCTAAATTCCTTTTGTCTATGCATA CATCATAATTTAAACTGTTGTGTAACCGTCTATCACCAAATGTGTCTACAAGTGTCTTGGTATAAGGATCATGTGTTTGA CCCGTTTAACCACAATATTAGATGATAAGTGGCTGTCTAATAGTACATTAAATGATAAGTCGCTATGAGTAATGAGGTTG AGTCCTCCTAATCTCTCATTCTAGTCCACTTGTTGCTAAAAAAAACTTGTTACGGGGATTAGTCTTAGACTATAGATTAG TCTCACTGAGTCACTGCTACTGGCCATAGCTACGTTAATTGGTTACGAAAAAAATCTTTCAATTAAATATTTCTGCTGTT TTAATTTATAAGACTGAAATTGTTCCCTTTTCTAACCTTTTACCACCTAAAAAAATAAAAAAATTAAGGGATGATTAGTC ATCATAATAGTCACACCAACATAATTATATGAAATGGATTGTCTAACCAACTTACTCGCGGGATTATAAGTAATGCAAGA TTATAAGTAGAGTTGTGCT
CDS sequence (LotjaGi2g1v0391600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCATGAAAAATGAAACAAATGTGGTGCACATGGAACTGGAAGATGGTGTGAACGAGAAGAGTCGTAGAAAGCTCAA CACGTATGCTTGTGCTTGCGTGATGGCCGTCACTATTATATCTGCCATATTCGGTTATGTTACTGGAGTAATGGCTGGAG CACTCTTGTTCATCAAGGAAGAGCTTGGAATCAATGACATGCAAGTCCAGCTCCTAGGAGGTATTTTAAACGTGTGCGCA TTACCGGCATGCATGGTTGCCGGAAGAACATCCGACTACGTCGGCCGCCGCTACACCATCATTCTATCCGCCGTAATCCT CTTATTGGGCTCCATTCTTATGGGCTACGGCCCATCTTTCCCAATCTTAATGATAGGAAGATGCACTGCAGGCTTTGGTG TGGGCTTTGCACTGATCATAGCCCCAGTATACAGCACAGAGATTTCACTTCCTTCAAATAGAGGCTTCCTCACTTCCCTC CCTGATGTTTCACTCAATGTGGGACTCTTAATTGGCTATGTCTCAAACTACTTCCTTGGGAAGTTACCCTTGAAACTTGG ATGGAGATTGATGCTAGCAATTCCAGTGATTCCTTCACTTGTGCTGATCATTCTCATGTTAAAATTGGCAGAGTCTCCGA GATGGTTGGTAATGCAGGGACGCGTAGGCGAGGCGAGAAAAGTGCTTTTACTTGTCTCTAACTCAAAGGAAGAAGCAGAA CAACGGTTGAAGGAAATAAAAAGTGCTGTGGGGATTGATGAGAGCTGCACCAAAGACATTGTCCATGTTCCCGAGAAAAC TCGCAACGGCGAGGGAGCTTTGAGGGAATTGTTTGTTAAGCCTTCGCCTCCGGTGCGCCGGATACTAATTGCTGCAATTG GAGTTCATGTGTTCCAGCAAATTTGTGGGATTGAGGGGATTTGTATATACAGTCCAAGGGTGTTTGAGAAAACAGGAATA ACAAGCAAGAGTAATCTCCTTCTAGCCACAGTTGGTTTAGGAATCAGCCAAGCTGTGTTCACATTCATTTCAGCTTTTTT GTTGGACAGAGTTGGGAGGAGGATTTTGTTGCTGATTAGTTCAGGGGGTGTGGTTGTGACATTGTTGGGTTTGAGTTTTT GTTCATTTATAATGCAGCAATCCAAAGAAGAACCCTTGTGGGGGATAAGTTTTACCATTGTTGCTATCTACATCTTTGTG GCTTTTGTGGCTATTGGGATTGGGCCTGTGACATGGGTTTACAGCTCTGAGATATTTCCACTGAGGTTGAGAGCACAGGG TCTTGGTGTGTGTGTGCTTGTGAACAGGCTTGCAAATGTGGCAGTGCTTACCAGTTTCATTTCAATTTACAAGACAATAA CAGTGGGTGGGAGTTTCTTACTGTATACTGTTATCACTGCTTGTGCTTGGTGGTTCTACTATTCCTACTTGCCTGAGACT AAAGGAAGATCATTAGAAGATATGGAGTCTATTTTTGGGAAAAATTCCAAGCCAGAGAAACAAATTAATGCAGCCCAAGT TAACAATGGATAG
Protein sequence (LotjaGi2g1v0391600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMKNETNVVHMELEDGVNEKSRRKLNTYACACVMAVTIISAIFGYVTGVMAGALLFIKEELGINDMQVQLLGGILNVCA LPACMVAGRTSDYVGRRYTIILSAVILLLGSILMGYGPSFPILMIGRCTAGFGVGFALIIAPVYSTEISLPSNRGFLTSL PDVSLNVGLLIGYVSNYFLGKLPLKLGWRLMLAIPVIPSLVLIILMLKLAESPRWLVMQGRVGEARKVLLLVSNSKEEAE QRLKEIKSAVGIDESCTKDIVHVPEKTRNGEGALRELFVKPSPPVRRILIAAIGVHVFQQICGIEGICIYSPRVFEKTGI TSKSNLLLATVGLGISQAVFTFISAFLLDRVGRRILLLISSGGVVVTLLGLSFCSFIMQQSKEEPLWGISFTIVAIYIFV AFVAIGIGPVTWVYSSEIFPLRLRAQGLGVCVLVNRLANVAVLTSFISIYKTITVGGSFLLYTVITACAWWFYYSYLPET KGRSLEDMESIFGKNSKPEKQINAAQVNNG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| TIGRFAM | 15 | 487 | 473 | 4.1E-85 | ||
| PANTHER | 18 | 503 | 486 | 1.2E-240 | – | |
| PANTHER | 18 | 503 | 486 | 1.2E-240 | – | |
| SUPERFAMILY | 19 | 489 | 471 | 4.45E-67 | ||
| Gene3D | 22 | 496 | 475 | 4.1E-116 | – | |
| Phobius | 29 | 57 | 29 | - | – | |
| TMHMM | 32 | 54 | 23 | - | – | |
| ProSiteProfiles | 33 | 481 | 449 | 45.087 | ||
| Pfam | 35 | 492 | 458 | 2.1E-89 | ||
| CDD | 38 | 488 | 451 | 1.03369E-160 | – | |
| PRINTS | 41 | 51 | 11 | 5.7E-20 | ||
| Phobius | 58 | 68 | 11 | - | – | |
| Phobius | 69 | 86 | 18 | - | – | |
| TMHMM | 69 | 91 | 23 | - | – | |
| ProSitePatterns | 87 | 104 | 18 | - | ||
| Phobius | 87 | 97 | 11 | - | – | |
| Phobius | 98 | 116 | 19 | - | – | |
| TMHMM | 98 | 117 | 20 | - | – | |
| Phobius | 117 | 121 | 5 | - | – | |
| Phobius | 122 | 144 | 23 | - | – | |
| TMHMM | 122 | 144 | 23 | - | – | |
| PRINTS | 124 | 143 | 20 | 5.7E-20 | ||
| Phobius | 145 | 155 | 11 | - | – | |
| Phobius | 156 | 174 | 19 | - | – | |
| TMHMM | 156 | 178 | 23 | - | – | |
| Phobius | 175 | 185 | 11 | - | – | |
| Phobius | 186 | 207 | 22 | - | – | |
| TMHMM | 188 | 210 | 23 | - | – | |
| Phobius | 208 | 287 | 80 | - | – | |
| Coils | 229 | 249 | 21 | - | – | |
| Phobius | 288 | 312 | 25 | - | – | |
| TMHMM | 289 | 311 | 23 | - | – | |
| PRINTS | 299 | 309 | 11 | 5.7E-20 | ||
| Phobius | 313 | 323 | 11 | - | – | |
| Phobius | 324 | 348 | 25 | - | – | |
| TMHMM | 326 | 348 | 23 | - | – | |
| ProSitePatterns | 344 | 361 | 18 | - | ||
| Phobius | 349 | 354 | 6 | - | – | |
| TMHMM | 355 | 377 | 23 | - | – | |
| Phobius | 355 | 378 | 24 | - | – | |
| Phobius | 379 | 389 | 11 | - | – | |
| Phobius | 390 | 415 | 26 | - | – | |
| TMHMM | 392 | 414 | 23 | - | – | |
| PRINTS | 393 | 414 | 22 | 5.7E-20 | ||
| Phobius | 416 | 426 | 11 | - | – | |
| PRINTS | 416 | 428 | 13 | 5.7E-20 | ||
| Phobius | 427 | 447 | 21 | - | – | |
| TMHMM | 427 | 449 | 23 | - | – | |
| Phobius | 448 | 452 | 5 | - | – | |
| TMHMM | 453 | 475 | 23 | - | – | |
| Phobius | 453 | 474 | 22 | - | – | |
| Phobius | 475 | 510 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0391600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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