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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0394100 |
| Transcript ID | LotjaGi2g1v0394100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | UPF0496 protein; TAIR: AT2G18630.1 transmembrane protein, putative (DUF677); Swiss-Prot: sp|Q56XQ0|U496I_ARATH UPF0496 protein At2g18630; TrEMBL-Plants: tr|G7KC47|G7KC47_MEDTR UPF0496 plant-like protein; Found in the gene: LotjaGi2g1v0394100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89168167..89171842) extracted from Lotus japonicus Gifu genome v1.2.
AAGCTCAAATTTATTTATAGTTATTATCATTATCTTTATAGAAAAGTGTAGAATGTAAAAGGAATTAAATTATTCAAATG TGGCGGCTGCGGAGAACGTATAGACAAGGAAAAAAAAAACAACAACAACAGTAAAGTAAACATGGGTCGACGTGGTCGTT GACTCTGAAATCACCACTCATTTGCTACCTCCTTGGCTTTGCTTTGACTTCATTCTCTGTTCGCCAAATCGCAATGCCCT CACAGTTCTCCACCGCACTCAGCCTCACCACAATCTCAATTTCTTCCTCTTCAAGTGATAGACACCAACATAATTCTGTC ATTTCGGCTGCAACCCAGGTATTAGAAACTTGTCTGCTGGCCCCATTTGCATATGAATTGTTATAAATAGAAACTTTGAT TTGGGATTTTTATGATTTCTTTTGATATGTAACTACTAATTATTGTATCTTCTCAACTGAAGGATTGGCCTTTGGATTCT GGATCTAGCTAAAGCTAGCCAATGATCCAATTGGGCATAATACCTTTGAAGTTTTGAAACTTTGCATTTACATAGGCTTC AGTTATTGATTAAGCTTAGCTGATTCTGTTTGCATTTAACCTTCTAGTTTAGAATTTGGGTTTAATATTCTTTGTGCTTT TGTTAGAATTGAATTGGTTGTGATGGGGGGTCAGTCCAGCAAAATGACTACTAGCACTGAGGTTCCAACACCCATCCAAA TGGGTACACATTCTCTGTATGCTGCTGATTTGAGCTATTATGAAGCTGCATGTGTTGAGGATCCAAACTTGCAATCCTTC GACGCTACCATTCAGGAGCGAACCAATAGGGTGATAAGCTCTCTTGCTAGTGGGGTTGAGGTTCATTCCATATCTATTGA CTCACTAGGAGAAGTCACTGGTAGTCTTCTTGAAATGAACCAGGAAGTTGTCAAGGTCATTCTCGAGTGCAAGCAAGATA TATGGAACAAGAAGGACCGGGATTTATTCTCCTTGGTGGATGATTTTTTTGAGAACAGTCTTCAGACATTGGAGTTCTGC AATGCTCTTGAGAAATGCTTGAAACGAGCGCGTGAAAAACTGGTTATTGTTAAGTCTGCAATGACTTATTTTGAGGACGA GGCGCAGAATGAGGTTGGAGGGTCAACTTATGTAAAGACATTGCAAGGGCTTAAGGATTTCAAGGAAGCTGGGGACCCTT TTACTGAAGAGTTTTATTCCTTGTTTCAATCAGTGTTTGCACAACAGGTATCAATGCTGAAGAAATTGCAATCTAGAAAG CACAAGCTTGATAAGAAGTTGAAATCCCTCAAGACATTGAAGAGGGTGTCAAGTGTCATTTTCGTGGCTGCTTTTGTCTC TGTGTTGATTTTCTCAGTGGTGGCAGCTGCAATTGCTGCACCACCTGTGATAACGGCTCTGGCTGGTGCGTTGGCTGTTC CGATAGGCTCAGTGGGAAAATGGTGTAACTCACTCTTTAAGAAATATGAGACAGCTCTGAAGGGCCAACGAGAAGTAATC AATTCAATGCAGGTTGGTACTTACATTCAATTGGTGGACTTGAAAAACATCCGGGTTCGAATCGAGCAATTGGAAATAAA GATGGAATCCATGTTGCAAAATGCTGATTTTGCTCTTACAAATGAGGATGGTGTAAGGTTTGCAATTGATGAGATTAAGA AGAAAATAGAAACTTTTGCGGATATCATTGATTCTTTGAGTGAGCAAGCTGATCAATGTAGTCGTCAGACAAGGAAAGCA AGGACAGTGGTTATACAAAAGATTATTAAATATTCTGGTTGACAACAGCTATGTATTGATTAATTTCTCTAGCTGCTGTC TACTTGTACTCCTACTATAAGGTAAGTACTTATTAAACACCCGGCTTATAACTGCATGATTTTGAAGAAATATGAAAATA TTAACTTGTGCACATTGCATTCACCTGAGATATATCCAATTCATTGATGTTAGTGAAATTCAGGGTGTGAGACATAATTG GTATGGCGGGGTGTCAGCTAATGTAGGGTTGTTCACATCACATTTTCTTTTGGGAAAGTTTCCTTGTCATTGTAGAGTCG CTCGCTGTTCACCTATGAAGGTATCTGAGCTGAGTTTGAAAAGGGAGAATTACTGAATTAGAGCGTGAAATTTATTGCTA TGGTTTCAGAATGTAGGGAGTAATTGAATTAAATTATGATTAGCTTACACTTGTTCTCTACACAAAGTCATGAGCTCAGA GTTTTACATGGGTTGAACCACATGTGATTAGTTAAAATGAATAGGTATCTTCTACCAGATTAATTAATTAATTTTAACTC ACTCATAATGATTGTTATTAGTTATTTTCACTCACATTGCCCTTCAAACGCAATGGACAAGCCTTCTAGACCCTGAATCA GCAAGTACATCATTGAAAAGCAGCAAGTGGAGAGGCCTTGGTGAGAACATCTGTGAATTGTTCTAATGAAGGAATCTGGT GCACATTCAACTCATGCTGTTGAACGTTACCACAAACAAAATAAAGTCTGGTTTTGGTCTGGTTTGGTTCGTGAGTGGAG GATCAGGTTAGGAACTTTGAAAACTGCACTGAGATTATTGCAATATATGACTATTGGTGATAGGATAGGGAGTTGCAGCT CACTGAAAATAGAATTGAACTATCCAAGCTCAACAGAACTGCACTGCATTGCTTCTAGATTCCTCTTTAGCTCTTGAGTG AGTAACAACACAGAGAATCCAGTGTGGATTTCCTATCATCAAGATCAAAGCCTCAATAACAATCTTATAACATTTCGAGA GAAGTAACATGTGCAACCCGAGGTCATTGGTCTTACCACCCCAAAATATTCTTCCCAAACCACCTAATTTAATCTTTTCA TTGCCCTTTCTTTTCCTCTCCCTACATCACCCCTCACTCTCACTCTCACTCCCCCCTTCTCGCAACTATATTTATCCAGA GCTTTATTTTTCACTAAGCACTTGTAGTTAGTTGTAGTTAGTTTCTTAATTAGTTAGAGCTAGTTTTAGAACACTTAGTT AATTACATTGACAGCTGTAAGTCACTCTCTATAAATAGTAGAAAGTGATCACAATCTCATTAACGATTGTGAATCTAACA CACCATATTGTTCAGTTCTCTGTTTTTCATACCTTCCTCGTCCAAGGCAGCAATCACCGTCCGATTTAGACAACAGCACT GAAGCTGCAAGGAGAAGAGGTACGAGAGGCTCGTTTTCCATTTTATGAAGCAAGATTGAAGTAAGGTTGTAGTTTCTATA TTCAAGTACTTTTTTGTAACCAAAAGAATATGTCATTTACTTTTTTGGGCATATGCCTTTTTTTGTCGATATTGGGCATA TGCCTTTTATTTTTGTCAATAATGGGCATATGCCTTGAATAGCCACAATAAGGACTACTATTATGGGTCGGGCCCAATAG ACTCAATTCGAACATCACCAACCCGTTTTTCGCTCATCTAGTGAGTGCTCCGAATGAGATTCATAAAAATTTTCAAATGT TTTAATATACTGACTCCTAATTTTTTTTATTTTATCGAGTTTTTACCATTTTAAAAATATTTCAATACACAAACCAAATA TTTATCATTTATTATTTTTAAATTACTTTTATCATTTATATTAAAAAAATAAAAGAAATATTATATTAAACATATA
CDS sequence (LotjaGi2g1v0394100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGGTCAGTCCAGCAAAATGACTACTAGCACTGAGGTTCCAACACCCATCCAAATGGGTACACATTCTCTGTATGC TGCTGATTTGAGCTATTATGAAGCTGCATGTGTTGAGGATCCAAACTTGCAATCCTTCGACGCTACCATTCAGGAGCGAA CCAATAGGGTGATAAGCTCTCTTGCTAGTGGGGTTGAGGTTCATTCCATATCTATTGACTCACTAGGAGAAGTCACTGGT AGTCTTCTTGAAATGAACCAGGAAGTTGTCAAGGTCATTCTCGAGTGCAAGCAAGATATATGGAACAAGAAGGACCGGGA TTTATTCTCCTTGGTGGATGATTTTTTTGAGAACAGTCTTCAGACATTGGAGTTCTGCAATGCTCTTGAGAAATGCTTGA AACGAGCGCGTGAAAAACTGGTTATTGTTAAGTCTGCAATGACTTATTTTGAGGACGAGGCGCAGAATGAGGTTGGAGGG TCAACTTATGTAAAGACATTGCAAGGGCTTAAGGATTTCAAGGAAGCTGGGGACCCTTTTACTGAAGAGTTTTATTCCTT GTTTCAATCAGTGTTTGCACAACAGGTATCAATGCTGAAGAAATTGCAATCTAGAAAGCACAAGCTTGATAAGAAGTTGA AATCCCTCAAGACATTGAAGAGGGTGTCAAGTGTCATTTTCGTGGCTGCTTTTGTCTCTGTGTTGATTTTCTCAGTGGTG GCAGCTGCAATTGCTGCACCACCTGTGATAACGGCTCTGGCTGGTGCGTTGGCTGTTCCGATAGGCTCAGTGGGAAAATG GTGTAACTCACTCTTTAAGAAATATGAGACAGCTCTGAAGGGCCAACGAGAAGTAATCAATTCAATGCAGGTTGGTACTT ACATTCAATTGGTGGACTTGAAAAACATCCGGGTTCGAATCGAGCAATTGGAAATAAAGATGGAATCCATGTTGCAAAAT GCTGATTTTGCTCTTACAAATGAGGATGGTGTAAGGTTTGCAATTGATGAGATTAAGAAGAAAATAGAAACTTTTGCGGA TATCATTGATTCTTTGAGTGAGCAAGCTGATCAATGTAGTCGTCAGACAAGGAAAGCAAGGACAGTGGTTATACAAAAGA TTATTAAATATTCTGGTTGA
Protein sequence (LotjaGi2g1v0394100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGQSSKMTTSTEVPTPIQMGTHSLYAADLSYYEAACVEDPNLQSFDATIQERTNRVISSLASGVEVHSISIDSLGEVTG SLLEMNQEVVKVILECKQDIWNKKDRDLFSLVDDFFENSLQTLEFCNALEKCLKRAREKLVIVKSAMTYFEDEAQNEVGG STYVKTLQGLKDFKEAGDPFTEEFYSLFQSVFAQQVSMLKKLQSRKHKLDKKLKSLKTLKRVSSVIFVAAFVSVLIFSVV AAAIAAPPVITALAGALAVPIGSVGKWCNSLFKKYETALKGQREVINSMQVGTYIQLVDLKNIRVRIEQLEIKMESMLQN ADFALTNEDGVRFAIDEIKKKIETFADIIDSLSEQADQCSRQTRKARTVVIQKIIKYSG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 221 | 221 | - | – | |
| PANTHER | 1 | 378 | 378 | 8.9E-231 | ||
| PANTHER | 1 | 378 | 378 | 8.9E-231 | – | |
| Pfam | 43 | 374 | 332 | 2.6E-119 | ||
| Coils | 199 | 219 | 21 | - | – | |
| Phobius | 222 | 244 | 23 | - | – | |
| TMHMM | 222 | 244 | 23 | - | – | |
| Phobius | 245 | 249 | 5 | - | – | |
| TMHMM | 249 | 271 | 23 | - | – | |
| Phobius | 250 | 268 | 19 | - | – | |
| Phobius | 269 | 379 | 111 | - | – | |
| Coils | 300 | 327 | 28 | - | – | |
| Coils | 335 | 355 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0394100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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