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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0394300 |
| Transcript ID | LotjaGi2g1v0394300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Elongation of fatty acids protein 3-like; TAIR: AT4G36830.1 GNS1/SUR4 membrane protein family; Swiss-Prot: sp|Q9SYY4|ELO3L_ARATH Elongation of fatty acids protein 3-like; TrEMBL-Plants: tr|I1LHM3|I1LHM3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0394300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89187249..89188683) extracted from Lotus japonicus Gifu genome v1.2.
CAAACACAATTCAATATTCATGGCCATTCCGTGTTGTCCAGATCAATCACATATATTTGACACACCAACCAACAACGCCA ACGCATATGTACACTCTAAGCCACAAATTTAATTTTAACCCCCCCTTTTTCTCTATCTCCCTTTTTAACCCTTTGCCGAC TCAAAACAGAATTCAAAACAACCATTAAAATGCCACTAAATTTAAACACAATGAAGAACTAAAGTGAGAGGAACAAAAGG AGCAGAGTCTCCGATCACCGTCACGGCCGCACCCTCCTCCACCACCACCACCACAATGGGTAAAGCCTCGGCGGCGATTC AGACCCTCAGCTTCTACCTCTCCGAACACCCTTCTATTGTAGGATTCCGATGGAGCCACGCCCAATCCTGGGGCTCCACC TGGTCCTTCCTCTTCACCTCAATCGCCGTTTACATCGTCATCTCCCTCTTCCTCCACCTTCTACTTGCCATATTTCTCCG CCGTGGCCGACCCGTCCCTCTAGGTCCATTACCGGCGATCCATTTCCTCTCCGTGGCCCTCGTCTCCGCCACCATCTTCG CCGGAATTCTGCTCTCCGCCGCCACGGAAATTAAAGAGACACGGTGGTTCTGGCGCCGGTCAAAAACCCCTCTCCAGTGG CTCCTCTGTTTCCCTCTCGGTACACGCCCCTCCGGCCGAGTCTTCTTCTGGTCCTACGTCTTCTACCTCTCGCGCTTCCT TCACATGTTGAGGACCGTCTTCGTCATCCTACGACGTCGTAAGCTCGTGTTCTTCCAGCTCTTCTACCACTCAATCTCCG CCTTCACGTCGTTCCTCTGGCTGGAATACTCGCAGTCGTTTCAGGTGCTGGCCATTCTGTTCACAACGCTGGCGTACGCC GTCATGTACGGTTACCGGTTTTGGACCGCCGTCGGGTCGTCGGCGCGTGGCGCGTGCTTCCCGCTTGTGTTGAATTGCCA GGTGGCGCTGTTGGGGTGCAATCTGGTGTGCCATGTTGGGGTGCTTCTGATGCATTTCTTTAAAGGTGGGTGCAATGGGA TTGGTGCTTGGGTGCTCAATTCTGTGCTGAACGGTGCCGTTTTGTTTCTGTTTCTCAATTTTTATGTGAGGTTGTATCTT GGGAAGAAGAGGAAGGTGAATTGTGTTGGAGAAGAGGAAGCAGGTGCAGACAAACTGAAGTCCAATTAATGCACAAGGGA TTTAGAATAATGTGTTTTTAATCTATGATGTTTTTGGGGTCCAAAATGTTAATCTGTTGATACGGACCATCTTCATTTTT TTTGTAAGAAGCATGCAGGTCTGTCTCTACATGAATCAAATACAATAGGCAGTTAGAATTTTTGTTGAGTATGATAAATT ATGTAAGTTATATATACACACTAATCTCTACAATGAAAGAAAGTGTATGATCATGTTAATTACTTGCAAACTGCG
CDS sequence (LotjaGi2g1v0394300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAAAGCCTCGGCGGCGATTCAGACCCTCAGCTTCTACCTCTCCGAACACCCTTCTATTGTAGGATTCCGATGGAG CCACGCCCAATCCTGGGGCTCCACCTGGTCCTTCCTCTTCACCTCAATCGCCGTTTACATCGTCATCTCCCTCTTCCTCC ACCTTCTACTTGCCATATTTCTCCGCCGTGGCCGACCCGTCCCTCTAGGTCCATTACCGGCGATCCATTTCCTCTCCGTG GCCCTCGTCTCCGCCACCATCTTCGCCGGAATTCTGCTCTCCGCCGCCACGGAAATTAAAGAGACACGGTGGTTCTGGCG CCGGTCAAAAACCCCTCTCCAGTGGCTCCTCTGTTTCCCTCTCGGTACACGCCCCTCCGGCCGAGTCTTCTTCTGGTCCT ACGTCTTCTACCTCTCGCGCTTCCTTCACATGTTGAGGACCGTCTTCGTCATCCTACGACGTCGTAAGCTCGTGTTCTTC CAGCTCTTCTACCACTCAATCTCCGCCTTCACGTCGTTCCTCTGGCTGGAATACTCGCAGTCGTTTCAGGTGCTGGCCAT TCTGTTCACAACGCTGGCGTACGCCGTCATGTACGGTTACCGGTTTTGGACCGCCGTCGGGTCGTCGGCGCGTGGCGCGT GCTTCCCGCTTGTGTTGAATTGCCAGGTGGCGCTGTTGGGGTGCAATCTGGTGTGCCATGTTGGGGTGCTTCTGATGCAT TTCTTTAAAGGTGGGTGCAATGGGATTGGTGCTTGGGTGCTCAATTCTGTGCTGAACGGTGCCGTTTTGTTTCTGTTTCT CAATTTTTATGTGAGGTTGTATCTTGGGAAGAAGAGGAAGGTGAATTGTGTTGGAGAAGAGGAAGCAGGTGCAGACAAAC TGAAGTCCAATTAA
Protein sequence (LotjaGi2g1v0394300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKASAAIQTLSFYLSEHPSIVGFRWSHAQSWGSTWSFLFTSIAVYIVISLFLHLLLAIFLRRGRPVPLGPLPAIHFLSV ALVSATIFAGILLSAATEIKETRWFWRRSKTPLQWLLCFPLGTRPSGRVFFWSYVFYLSRFLHMLRTVFVILRRRKLVFF QLFYHSISAFTSFLWLEYSQSFQVLAILFTTLAYAVMYGYRFWTAVGSSARGACFPLVLNCQVALLGCNLVCHVGVLLMH FFKGGCNGIGAWVLNSVLNGAVLFLFLNFYVRLYLGKKRKVNCVGEEEAGADKLKSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 286 | 286 | 4.2E-157 | ||
| PANTHER | 1 | 286 | 286 | 4.2E-157 | – | |
| Phobius | 1 | 35 | 35 | - | – | |
| Pfam | 34 | 280 | 247 | 4.0E-35 | ||
| Phobius | 36 | 61 | 26 | - | – | |
| TMHMM | 39 | 61 | 23 | - | – | |
| Phobius | 62 | 72 | 11 | - | – | |
| Phobius | 73 | 96 | 24 | - | – | |
| TMHMM | 74 | 96 | 23 | - | – | |
| Phobius | 97 | 128 | 32 | - | – | |
| Phobius | 129 | 145 | 17 | - | – | |
| TMHMM | 130 | 152 | 23 | - | – | |
| Phobius | 146 | 156 | 11 | - | – | |
| TMHMM | 157 | 176 | 20 | - | – | |
| Phobius | 157 | 176 | 20 | - | – | |
| Phobius | 177 | 181 | 5 | - | – | |
| TMHMM | 182 | 204 | 23 | - | – | |
| Phobius | 182 | 203 | 22 | - | – | |
| Phobius | 204 | 214 | 11 | - | – | |
| Phobius | 215 | 242 | 28 | - | – | |
| TMHMM | 217 | 239 | 23 | - | – | |
| Phobius | 243 | 247 | 5 | - | – | |
| Phobius | 248 | 271 | 24 | - | – | |
| TMHMM | 249 | 271 | 23 | - | – | |
| Phobius | 272 | 297 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi2g1v0394300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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