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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0394700 |
| Transcript ID | LotjaGi2g1v0394700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PQ-loop repeat family protein / transmembrane family protein; TAIR: AT4G36850.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|Q12010|YPQ1_YEAST Probable vacuolar amino acid transporter YPQ1; TrEMBL-Plants: tr|G7KAU2|G7KAU2_MEDTR PQ-loop protein/transmembrane family protein; Found in the gene: LotjaGi2g1v0394700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89216048..89220625) extracted from Lotus japonicus Gifu genome v1.2.
GTTTCGTTTGCTTTAAAACCAGCTCAAAATCTCACCTATTAAACCCAAATGCAACAAGAGAGAGTGTGAGAGAGAGGGGA AAAAAAATGGCACCGCCGTCTTACTGTGTGAATGAGGGTAAAGCATGTGTGGGTTGGGTTCAGAAATACTTTAGTGACTG TCTGTGCAACCTGAGTGATGAAATCTCGTTCGGCTTCGGTTTCATCAGTTTAATATGTTGGGGAGTTGCAGAAATTCCAC AGATATTCACTAACTTCCAAGCTAAGTCCAGCCATGGTGTTTCTCTTACATTTCTCCTCACTTGGGTTGCAGGGTAATTA CATTTCATTTCATTTCACAACTCTTATTTTAATTTCCTATTTTAATTCATATTTCACACGCAAAAACGTATTTTGTGGTC GGCTGTTTACTACTTAGTATGAACATCTGCCGCATATAGATGATTAGTTATTAGTGTCAGTCGCGGATATACCTTGGACA AAAAAAATATAAATTAAGCTTGTTTTCTTAGCTTCAAATCACCTTAATTTCATTTCTTCTTCTTCCACCATGTTAATTAA CTTGTTAATTGTTTTTGTTAAATTACTTGAATTTGATTATTTGAATTTTGGGTGCAGCGACGTTTTCAACCTGGTGGGTT GCCTCCTGGAGCCGGCTACGGTATGTGAATTTTAACCCTAAGATATTTGTTTTGTTATGGTCCCTGTTTCATAAGGGTAC CCTTCCTCTCTAAAAATTAAAATTCCTTGTTATTGAAAAGGAAAAAGGTAAATATGCCATTTTTAGAGTATTACTAATCA ATCAAATCAGTATTCTAAAAATAGAAAGTTTTAATTAAAAATTACAGTATTTAATATTACTAATTTTAGAAGGAATTGTA TTAGAATATACTTATAATATTGTAAAGACTTCCCTTTTAATTTGCTTTTGGTACTCACACCTTCTTTTTTTTTTATAAGC CAAAATAATATATTGAATTAAGTACAAGGGGTACTTCAACCCAATACAAAGAGGATGAGAGAAAAATAGAAGAAAAACAA TCGAAGGAACTACAACCAGAACCTTAAGAGAACCCCCTCCCTAAGAAAGCACAACTTACTAGAATATACCTCGTTAAAAC CTTTCCAGAAAAACCCCTTGGGAAAAACCTGGAGAAGAAAAAAGAGTACACATTACAGGAAGCCCCAATGTCACCTCCAA GGAGAAATACAAAACCCACCCAAAAAATGAAAAGACAAGCAGATCACTATCCCCTTCCTTTTAAAATAATATATTTTAAT AAGAAACTTTGCTTTTAATTTTCTAATTGGTGCCGTGTTTAGTTAGTACTCCTTTTACTATTTTTTAATAAGATAAAATT ATTACATTTATACTTTATTTACAATAATTATGATTGATGATTTACTTGTTTTTTTTCCTTCTTCTTTTCGGATTGCTGGA AATGCAGTTGCCGACCCAGTACTACACAGCTCTGGTAATTTAATTTTCCATTATGCATATTAGTTATTTATTTGGGTATA GTGGTTCTGTGGTATATTTTACAATAATTTGTTGTTTAAAAAATTAATCAATATGAGTGCAATCGTTCACTCATTTTTTT TGGTCAAATCGCTCACTCATAGAAACAAACAGAATATTTACAAAGTTGCAAAAAAAAATGGGCTGGGCCAATTAGAAATA ATGGTACATGGCCCAATATCTAATGGCAGTTGTTACTGTGTATAATTTACAGCTTTACACAATCACTACGATCGTGTTAG TATTGCAAAGCTTCTATTATGACTACATTTATAAATGGCGCAAGCGTCGTCAGAAGATTAACATTGAAGAGGTCCTTTTT TTATTTTGATGGTCCTTTTTTACTAATCAAAATTGAGATTAATTCACAGAACATTAACATTGTGTTAATTAATAATAGGT TTTTGAAGAAGAGAGCAAACCTTTGAGACCAAAGCCAGGCTCTAACTTAGGGGTTCCAATACAAAATGGCACACACAAGG CAGTTCCTCGACGGGAGTATTACTATGCGTAAGTATATTTTAACAAATAATTAATATAGTGCTTAATCTTAATGAATGGT TCAATTTAGAAAAAAGCGTAAGTATGAGACTTGCGTGGTGGTTGATCACCTCGTCCCTTGATAATGAGGTCGGGGATCTT GCCTATGGAAAGCACATTTTGTGCTTTAGGACTTAGAGCGAGCACCCACTGAGAAGTGATTAGTCAATGTTGACGGAGGT GGATACCTGATATAAAAAATTAAAAAAATAGAAAAAATGTGATGTGAGTTTTAATTGTGGAGTTAATTAATTGAACAGGT CAGCGAGATCAATGATTGGTAGTGCCACTCCACCATGTCATGCCTACATTAGAGCTGCTAAAAGTGGCCCTTCAGCCATG AATTTGAACTTTGATTCATCTTCTGATGATGATGAATCTCCTCCACTTCCTTCTACACAGCCTAGACCTATCCCTCGTTC TCTGGTGAGACTTAATTAAGCATTGACAGTTTATTACTCAAAATACTACATTATAAAATGCATTGTATCTATACTTCAAT TATGGAACTCTACATATCCAATGAAAGTTCAATCCTGTAATTCATTGTCCACTACTGATTCAGGGAAGCTATGGAACTTT TCTAGCAACAGCAGTTAACTTTCCCTTGACGGGGAGTGCTTTATGCATAAGATTGAGTGGAAGAAAACTACTCCTTCAGG TATCACTAGCTACCTAATTCTACGGTAGCGATATATTCCTTCATTTATAATCATCTCAAATGTGTTTTGTTGAAAAGTCT CACGTTGGCTAGAGTCAAATAATTTCTTATAAAGGTTAAACAAATTTCAATCCTAGCTAAGCTAGTTTTTGCGCTAGAGT TATATCTAACCCAAATTCTTCGCAGGAGCATGACATGCACAGTGCTTTGGGTCAATGGTTGGGATGGCTCATGGCTGCTA TCTATACGGGTGGTCGCCTCCCTCAAATATGGTTGAATGTATGTGCCCATTTTTCTTTTTTATTTCCCAATTTGTTGATT GCATTCTATTTTCTGTACCAAATTATAACTGACAAAGTTGTTTACATCATTATTGGCCAGATCAAAAGAGGGAGTGTAGA GGTAATATTTAATCCAAATAATTCCTTGTACTTGAATTATTAATTACAAGTTCAGAGCATAACTTGTGTATTTCCACTAA TTCTTAGATGATTTTTTATAGGGATTGAATCCTCTCATGTTCATCTTTGCACTAATTGCCAATGCCACTTACGTTGGAAG GTTATAATTAATCCTCTCACAATCATATATTTACTTGCATTTCCTTATTCTGAAAAAAGTCAAAAACTAAAAATATCTAA CTCATGTTGTCTTTGCAGTATTCTTGTACGAACTACAGAATGGGAAAGCATCAAAGCGAATATGCCATGGTTGCTAGATG CCATAGTTTGCGTGGCATTGGACCTATTTGTATCCTTATATAAGCACTTTTTGGTTCAGATTTTTAATGAAAAATTATAT ACATTCATGGCTGAACTTTGCAATACCTTAACATTGCTTGACAGATAATATTACAGTACATCAACTACAGATATATACGG AAGAAACCAACAAGTGCTGATGATGGCAAATATGAAAACTACAAAGAAGACAGAAAAAGTGTCGTGTATTGATAAGTGTT AATTAATTTGCTACTAGATATTGATCTGCAGTACTAATTAGGAAATTATGATCAATTTTATGAATCATGAACCGTTAATG CATGATTCTTATAATACTAATCAAAAGGTGAATTTCACCTTCCACTTTTTGTCACTTTCATTTCAACAACTACCAGATTT GGTGAGTGTTGATATTTCCAAATCCAAGTTATCAATTTAGTGAGCTATGAACCGTTCACTCAAACCTGTATGATGCAAAG CTCTAATTTGATTTTGGAACCTAAATCATGAACCGTTCATTCATGGTTCTCAAAAAAGTGTAAGAAAATTTGGACATTGT GTCGTTATCAACAACCAAAGTCCAAAACAGATGTGATTGATGTATCTGGACAGTTCTGTTGCCTTTATTCAAACAGTTAC GTCCCTATTGCCTACTTTTTTTTCATTTTGTTGTTGTCCAAGGAAAAAATGTACGATTTTGCAAAATATGTGAAAACTCT ATGAAGAGGGGTTATTGTTTTGGCACATATGACAGAAACATCACCAACAACTACTGCAAATATTCATAACAATTTTATCA TGAGGAGGCTGTGAACACTTTTCATTGGAGGAACAGAGCAAGAAGTTTGATTGGTGTCAAGAGGTGCACCACAAATGCCT TGCCTTTGTTACCACCAATAATAACAGATCCATGGGTATTTAAATTCAGAGTTCCTTGCTATAGCTGGCTTACACCAAGC AACAGGGCCGTGTAGGGGATTGGAAAAGTAAGCAATTGCCTAAGGCCCCCTAGAATATATTAGGCCCCAAAAATATTTTG TATGTATATACTACATAAGATATATTATTGAGACTTGATAGAGTAATGAAACAATAAAAAATTATGCAACATTAATCGTA ACATGGATAATGTAATTA
CDS sequence (LotjaGi2g1v0394700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACCGCCGTCTTACTGTGTGAATGAGGGTAAAGCATGTGTGGGTTGGGTTCAGAAATACTTTAGTGACTGTCTGTG CAACCTGAGTGATGAAATCTCGTTCGGCTTCGGTTTCATCAGTTTAATATGTTGGGGAGTTGCAGAAATTCCACAGATAT TCACTAACTTCCAAGCTAAGTCCAGCCATGGTGTTTCTCTTACATTTCTCCTCACTTGGGTTGCAGGCGACGTTTTCAAC CTGGTGGGTTGCCTCCTGGAGCCGGCTACGTTGCCGACCCAGTACTACACAGCTCTGCTTTACACAATCACTACGATCGT GTTAGTATTGCAAAGCTTCTATTATGACTACATTTATAAATGGCGCAAGCGTCGTCAGAAGATTAACATTGAAGAGGTTT TTGAAGAAGAGAGCAAACCTTTGAGACCAAAGCCAGGCTCTAACTTAGGGGTTCCAATACAAAATGGCACACACAAGGCA GTTCCTCGACGGGAGTATTACTATGCGTCAGCGAGATCAATGATTGGTAGTGCCACTCCACCATGTCATGCCTACATTAG AGCTGCTAAAAGTGGCCCTTCAGCCATGAATTTGAACTTTGATTCATCTTCTGATGATGATGAATCTCCTCCACTTCCTT CTACACAGCCTAGACCTATCCCTCGTTCTCTGGGAAGCTATGGAACTTTTCTAGCAACAGCAGTTAACTTTCCCTTGACG GGGAGTGCTTTATGCATAAGATTGAGTGGAAGAAAACTACTCCTTCAGGAGCATGACATGCACAGTGCTTTGGGTCAATG GTTGGGATGGCTCATGGCTGCTATCTATACGGGTGGTCGCCTCCCTCAAATATGGTTGAATATCAAAAGAGGGAGTGTAG AGGGATTGAATCCTCTCATGTTCATCTTTGCACTAATTGCCAATGCCACTTACGTTGGAAGTATTCTTGTACGAACTACA GAATGGGAAAGCATCAAAGCGAATATGCCATGGTTGCTAGATGCCATAGTTTGCGTGGCATTGGACCTATTTATAATATT ACAGTACATCAACTACAGATATATACGGAAGAAACCAACAAGTGCTGATGATGGCAAATATGAAAACTACAAAGAAGACA GAAAAAGTGTCGTGTATTGA
Protein sequence (LotjaGi2g1v0394700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPPSYCVNEGKACVGWVQKYFSDCLCNLSDEISFGFGFISLICWGVAEIPQIFTNFQAKSSHGVSLTFLLTWVAGDVFN LVGCLLEPATLPTQYYTALLYTITTIVLVLQSFYYDYIYKWRKRRQKINIEEVFEEESKPLRPKPGSNLGVPIQNGTHKA VPRREYYYASARSMIGSATPPCHAYIRAAKSGPSAMNLNFDSSSDDDESPPLPSTQPRPIPRSLGSYGTFLATAVNFPLT GSALCIRLSGRKLLLQEHDMHSALGQWLGWLMAAIYTGGRLPQIWLNIKRGSVEGLNPLMFIFALIANATYVGSILVRTT EWESIKANMPWLLDAIVCVALDLFIILQYINYRYIRKKPTSADDGKYENYKEDRKSVVY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 32 | 32 | - | – | |
| PANTHER | 3 | 366 | 364 | 1.7E-179 | – | |
| PANTHER | 3 | 366 | 364 | 1.7E-179 | – | |
| Gene3D | 28 | 125 | 98 | 2.5E-7 | – | |
| Phobius | 33 | 55 | 23 | - | – | |
| Pfam | 33 | 89 | 57 | 1.7E-17 | ||
| TMHMM | 35 | 57 | 23 | - | – | |
| SMART | 47 | 78 | 32 | 1.6E-9 | ||
| Phobius | 56 | 66 | 11 | - | – | |
| TMHMM | 64 | 86 | 23 | - | – | |
| Phobius | 67 | 89 | 23 | - | – | |
| Phobius | 90 | 94 | 5 | - | – | |
| Phobius | 95 | 117 | 23 | - | – | |
| TMHMM | 96 | 118 | 23 | - | – | |
| Phobius | 118 | 223 | 106 | - | – | |
| MobiDBLite | 197 | 221 | 25 | - | – | |
| MobiDBLite | 197 | 211 | 15 | - | – | |
| Phobius | 224 | 244 | 21 | - | – | |
| TMHMM | 224 | 246 | 23 | - | – | |
| Phobius | 245 | 263 | 19 | - | – | |
| Pfam | 264 | 322 | 59 | 6.5E-16 | ||
| Gene3D | 264 | 368 | 105 | 1.5E-5 | – | |
| Phobius | 264 | 286 | 23 | - | – | |
| TMHMM | 266 | 288 | 23 | - | – | |
| SMART | 278 | 309 | 32 | 1.1E-9 | ||
| Phobius | 287 | 297 | 11 | - | – | |
| TMHMM | 295 | 317 | 23 | - | – | |
| Phobius | 298 | 317 | 20 | - | – | |
| Phobius | 318 | 328 | 11 | - | – | |
| Phobius | 329 | 350 | 22 | - | – | |
| TMHMM | 330 | 352 | 23 | - | – | |
| Phobius | 351 | 379 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0394700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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