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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0399300 |
| Transcript ID | LotjaGi2g1v0399300.6 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat-like superfamily protein; TAIR: AT3G50590.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha; TrEMBL-Plants: tr|A0A0R0LJY8|A0A0R0LJY8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0399300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89635011..89640725) extracted from Lotus japonicus Gifu genome v1.2.
ATTAGGAGTGAAATAAACTGCACTACACTTGAAACCATAACTCTGGTTTAAAATCATGTTCACCTATTTCTACCTTCCCA CTGTCCACCTGCTCAGCCAAGCAGACCATAAATTTATGTGTGTTACATGGATATATTCTCATTTTTAAAACCTTAACTGA CCCTACTTTAAATCACTCTTATGGGTTGGGCCTGCCCTTCTTTTTTCTACTGCCACTGCAATCAGTATGCTTGGCTGGGA TGGAAAAGCGAGAACTATCCTCTCAATTAGTATGCCTTATTCAGGTAATTATCTTTCTGCATGCTGGGATGTCACCATAT CTCAGCCATCTATTTTGTATGTTCTATTTTATAAACTAATGTACTGCTTTTTTTCCCGCGTATTATCCTTTGTCGATCTA TTTAAAAAAAATTCTTATGCAGTCCTGGTTGGTGCTTTGAATGATCGATTGTTGCTTGCTAGCCCTACGGAAATAATTCC CAAACGGAAGAAGGAGGTTGAGGTCAAAACCTGTCTTGTTGGTCTTCTTGAGCCTCTTCTCATTGGATTTGCCACAATGC AGCAAAGTTTTGAGCAGAAGCTTGACCTCTCAGAAATACTATACCAAATAACATCAAGGTTTCCTTCTTTGCAACCAAAT AACCTCCTTTCATAAAAATATAACTTTCTAGCGGGTTGAAAGTGTTAGACTTCAAGGTCCCTTTTCAGTTTTCACGATAC TTTATCTATGTTAAATTTGGAAACAACTATCACAGTAAATTCTTATCTGGATGAAGGTTTGACAGCTTGCGCATAACACC AAGGTCTCTGGACATCCTTGCTAGAGGTTCTCCTGTTTGTGGAGATTTAGCTGTGTCATTATCTCAATCAGGTCCACAGT TCACCCAGGTGAGTAATAAAATTAATTGATTTGGCTTTTAATTTTGGTGTATCTGTTCTTTTACAGATTGTGTGTTGTCC TTAGGTGATGAGGGGTGCCTACGCTGTGAAAGCTCTTCAATTTCCCACTGCTTTATCTGTTTTGAAAGATGAATTTCAGC GTTCAAGAGATTATCCACGATGTCCTCCTACATCTCATTTATTTCACAGCTTCAGACAGTTGGGTTATGCCTGTATCAGG TACGCTGAGTGGTAGACTAGGAAAATTCATAGTATGATGCTGCCATTGTACCTAAAGGAAATGCTGAAATATTACGCTTT GTGTTTTCCATGACTATTAATTGTCTTGAGTTATTACTAGTTAATATTAAGGTTTACTTTCTAATCCAGCCATTAGCTAC GCGCCTACGCCATTATGCATCTAAAATTCTGTATTATATATGAAACTGGAGGAGTTTTCTTTTAATTATTTATTTAGTTA CAACTCAACAATAATTGTAGTTTCATGATTCTAGCCTATTCTTTTGTGGAGTAAAAATGAATTACAGTTACTAATCATAT ATTCATATTGGACCTTATCTACTAGAAAATGCACTATATAAGCTCCAATAAGTGTTCTTTTGTTTGTATCAAGAGTAAAT GCAATACAGAGAAAGCAGTAATAAAAGGACATAGTCTAAATGGATTAGAAGAATCCTGTTTAAAGTGATTGGTCACATGA GAAGAAGACTAATAGAAGCCTTAATAAAAGAATGGAACAGATGGAGGATAACCTTATAGTTAGGGGCAAAGGTAGGTGAA ATCACTATAAAAGGACATAGTCTAAATGGACTTGATAAATCAGTAATCACAATGGTGTATTTGATCTAATGGGAAAATGC TTTGGTGGTTGTTATCGTACAATTTTTATTTGCTTACATGTCTAGCTTAATTTGCTTTTCCTTTTCTTGATTGATTATGT CATGATCAATAAAATGCTTTGGCTTCTGCTTATTTATATTTGAATATTTCTAGTCTATTAATGATCAATATTATTTTACG TATTGTTGGTTTATAGCCATTCACATCAACTATGTCATGCATGTGTCTGTTAAATGGGAGAGGAAAGAGTTATAGTGGGG AAGACGGAAAAGAAAGAGCGACAACTGTGAATATTATACTCAGTAATTGATAGATAGTAATGATTCAGAACTATTACTTA TGATCCAATACCCTAACCTTGGAAAAAGCTCCTCTAAATTGAATCTATGTGTAAAGTGAGAAAGTGAGAGTGTGTCAAGT ACTAGCATTTCTAGACAAGATCAAACTATTCATGAGCTGGTGTGTGAGTGATACTGTAGTTCTTTGAATAGCATGATAGA AAAGTTTGTTCTCTTCTGTAATTTAAGATTAATTGCAGGTTTGGACAGTTTGATAGAGCCAAAGAAACCTTTGAAGTAAC TGCTGATTATGAAAGCATGCTTGATCTGTTTATATGCCACCTTAATCCTAGTGCCATGAGGCGTCTTGCTCAGAAGTTGG AAGAAGAAGGTCTTGAATCAGAATTGAGGCGATATTGTGAAAGGATTTTACGAATTCGATCTACTGGATGGACACAAGGC ATATTTGCCAACTTCGCTGCGGAAAGTATGGTTCCTAAAGGACCTGAATGGGGTGGTGGAAACTGGGAAATCAAAACCCC TGCTACTGCAAAGGATATACCTAAGTGGGAGCTTGCTGCAGAGGTGACGCCATACATGAGGACTGATGATGCTGCAATTC CATCTATTATTCTAGATCATATTGGTGTATATTTAGGCTCAATTAAAGGAAGAGGCAATACTGTAGAGGTAAGGGAAGAT AGCTTGGTTAAAGCCTTCATCCCGGCTGGTAATGATGTTAAAGCAAATGGTGTTGAAGCACCTTCTGTTCAATCCATATC TAACCAATCGAAGGGGGTTGATAATTCCCAAGGTGATTCATTTATGGGTCTGGGAGGTCTTAAGAAACAATTTGTCAGTC CCTCTGCTGATGAACAGGCTAAAGCGGCTGAAGAATTTAAGAAATCCATGTATGCAGCTGCTGCTGCTGATGGCAGCAGT AGTGATGAGGAAGGAGTGTCAAAAACCAAAAAAATACATGTTAGAATACGAGACAAGCCGATTGACTCTTCTACTGTGGA TGTGAACAAGATTAAAGAAGCCGCTAGTAAATTTAAACTTGGTGCAGGGTTAACTTCATCAAGGAGCAGGTCAGCAACAA GTGGATCCCATGATCTTGGTCAGATTTTGTCCCTGCCACCTGCAACTACTGGAGTGGCTACTCCTACTGCTTCAACTCCT GGCGACCTGTTTGGTACAGATGCCTTTGCTCAACCACAATCAACTTCACAGCAAACTACTGGAGTAGTAAGTAGGGGGGG AGTTAAAGCTGGACCTATTCCGGAGGATTTCTTTCAGAACACAGTTCCATCCCTTCAGGTTGCTGCTTCACTGCGTCCTG CTGGGACATATCTCTCAAAATATGCTCAAGGGGTTGAAATCGGCAAGGCAACTCAAAACCAGGACAGTGCTTCTGAAGGT GATGTTCCTCCTAAATCTGTTCAACAACCTGGGGTTCCCATTGAGCCCATGGGACTACCTGATGGTGGTGTCCCACCACA ATCCTCAGCTCAGGCTGCAGTCATGCCCACATCACAGCTGCAGGCACCAATTTCTAGCCAGCCTCTTGATCTTAGTGTCC TTGGAGTACCAAATTCTGCTGATTCAGGAAAGCCTCCACAAACTGGTTCTCCACCATCTTCTCTACGACTTGGACAGGTA TAAGTAAATACATGCGTAGGCATCTAGATAAATAAATTATGTGCTATTTTTTTTTTTGAGGTTTTATGGTATATTTTGTG TGCCTGGAAAGAATATGGAAAGGCATGCAAGAATTGCATATTTTGGATTGAAGTGGCATGCAGCATCAACAGAGAGGAAT ATTCTTTTTTCTTCCTTTAATTATTCTGTGGATGCTAGGGATAGAGAAGGAATTAGGAAGGTTTTCTAAGATAAATGGTC TTATTGAGATAGTGCGTATAAACTCTGGTTACTTATGATAATCTCAGCAGAGAAATCAGCTTTTCTGAACCTGGTAATTT TGGCCTCCCACCTATGCCTAAGGTGGATTATTTAAGAAATATAAGGGCAGCAGGGAACTATTGGCATGTGAGGAGAATGG AGAAATATGAGAGGGGTCAGTTGGGGGGAGTGTAATGTAACAACCCGCACATGTGGCAGGTGGAGATGGGACCTGATCCT GTTAATGAAAATAGAGAAGGGGGTGAGGGAAGAAAGGTTTGCGTGAATATTGGAAAGGGAGGAAGCGAACCCCTTGAAAA GTCTGTAATGGTTTCAATCATTCTCCCTTTTCTGCTGGTCTTTATCTTTGGTATTTTGTACAAATCCTTCTCTGGTACTA TATCAAAAGCTGAACTCAGAGTTTTCTTCTGTAAAACCTTGTTCTACAATTTTCTATTGCTGAGCATGTATGGTTTCTTT ATTTGTTCTCATCTCACTCGGCTCAAATGACAGGTTCCACGAGGGGCTGCTGCTTCTGTATGTTTCAAGACTGGACTTGC TCACCTTGAGCTAAATCATCTTTCAGATGCATTGTCTTGCTTTGATGAATCTTTTCTTGCATTAGCTAAGGATCAATCTT GTGGAAGTGATATAAAAGCCCAGACAACAATCTGTGCTCAATACAAGATAACAGTCACTCTTCTTCGGGTACTATTACCA TGCTTCTGTTTTTAGTGACATGGATAGAATGGAATCTAACCTTAAAATAATTGAAATCATTGGGCTTCTGTTTCTCTAAG CCCATAAGTAAGCATTATCATGAAACAGTAGTTAAAGGTTTTCCATGGTTGCAATCTTTGTTGTGCAGTTATAGTTAGCA ATGACAGGTGACTCCTAAGATAGTAAGCATCAGAGACAATAAAAGTAATTACTACAATACCTGCTACTATCTTTGTTGAT ATGAAATTATATATGAAGAAAATGTATTAGTTTTTCCATACGGAATCCTAGGCTAAGATATATAATGTCATTTTACAGTC TAAACTACAAGAAAGAAAATAAACCATAATCTACACTTGTAGTCATTTGAGCCTATTATAATGTTTTGTGCGGATGCCTT GATAGTCAATCAGACTTGATAAATCTCTCCATAAGCTCAAATGATAGGAACAAAATACTTATCTCAGTTGAAAAGCTCTC GTGAACTAGAAACTAATCAAAATTGGGCCTTTACCTGGTTAGAAATGAACCTCCAAATATATTTCGCATTTACATTGGAT GACTTTATTCCTTCATTACTTCAAAGCTGTCCTCGTGACTGCAGGAAATAGAACGTTTGCAAAGAGTCCATGGTCCAAGT GCAATCAGTGCAAAAGATGAGATGGCAAGACTTTCACGCCATCTAGGTTCATTGCCTCTTCTAGCAAAGCACAGAATAAA TTGCATTCGAACTGCCATAAAACGAAACATGGAGGTGCAAAATTATGCATATTCCAAGCAAATGCTAGAACTACTATTGT CTAAAGCACCTGCAAGCAAGCAGGATGAATTTAGGTGCCTGATCGATTTGTGTGTTCAGAGGGGTTTGACTAACAAGTCC ATTGATCCACTAGAAGATCCTTCTCATTTCTGCGCTGCCACATTAAGCAGGCTATCGACCATTGGATATGATGTCTGTGA TCTATGTGGAGCCAAATTTTCAGCCGTGAATGCTCCTGGATGCGTCATCTGTGGAATGGGAAGCATCAAAAGATCAGATG CACTCACAGGTCCAGCTCCTTCTCCATTTGGTTGA
CDS sequence (LotjaGi2g1v0399300.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGGCTGGGATGGAAAAGCGAGAACTATCCTCTCAATTAGTATGCCTTATTCAGTCCTGGTTGGTGCTTTGAATGA TCGATTGTTGCTTGCTAGCCCTACGGAAATAATTCCCAAACGGAAGAAGGAGGTTGAGGTCAAAACCTGTCTTGTTGGTC TTCTTGAGCCTCTTCTCATTGGATTTGCCACAATGCAGCAAAGTTTTGAGCAGAAGCTTGACCTCTCAGAAATACTATAC CAAATAACATCAAGGTTTGACAGCTTGCGCATAACACCAAGGTCTCTGGACATCCTTGCTAGAGGTTCTCCTGTTTGTGG AGATTTAGCTGTGTCATTATCTCAATCAGGTCCACAGTTCACCCAGGTGATGAGGGGTGCCTACGCTGTGAAAGCTCTTC AATTTCCCACTGCTTTATCTGTTTTGAAAGATGAATTTCAGCGTTCAAGAGATTATCCACGATGTCCTCCTACATCTCAT TTATTTCACAGCTTCAGACAGTTGGGTTATGCCTGTATCAGGTTTGGACAGTTTGATAGAGCCAAAGAAACCTTTGAAGT AACTGCTGATTATGAAAGCATGCTTGATCTGTTTATATGCCACCTTAATCCTAGTGCCATGAGGCGTCTTGCTCAGAAGT TGGAAGAAGAAGGTCTTGAATCAGAATTGAGGCGATATTGTGAAAGGATTTTACGAATTCGATCTACTGGATGGACACAA GGCATATTTGCCAACTTCGCTGCGGAAAGTATGGTTCCTAAAGGACCTGAATGGGGTGGTGGAAACTGGGAAATCAAAAC CCCTGCTACTGCAAAGGATATACCTAAGTGGGAGCTTGCTGCAGAGGTGACGCCATACATGAGGACTGATGATGCTGCAA TTCCATCTATTATTCTAGATCATATTGGTGTATATTTAGGCTCAATTAAAGGAAGAGGCAATACTGTAGAGGTAAGGGAA GATAGCTTGGTTAAAGCCTTCATCCCGGCTGGTAATGATGTTAAAGCAAATGGTGTTGAAGCACCTTCTGTTCAATCCAT ATCTAACCAATCGAAGGGGGTTGATAATTCCCAAGGTGATTCATTTATGGGTCTGGGAGGTCTTAAGAAACAATTTGTCA GTCCCTCTGCTGATGAACAGGCTAAAGCGGCTGAAGAATTTAAGAAATCCATGTATGCAGCTGCTGCTGCTGATGGCAGC AGTAGTGATGAGGAAGGAGTGTCAAAAACCAAAAAAATACATGTTAGAATACGAGACAAGCCGATTGACTCTTCTACTGT GGATGTGAACAAGATTAAAGAAGCCGCTAGTAAATTTAAACTTGGTGCAGGGTTAACTTCATCAAGGAGCAGGTCAGCAA CAAGTGGATCCCATGATCTTGGTCAGATTTTGTCCCTGCCACCTGCAACTACTGGAGTGGCTACTCCTACTGCTTCAACT CCTGGCGACCTGTTTGGTACAGATGCCTTTGCTCAACCACAATCAACTTCACAGCAAACTACTGGAGTAGTAAGTAGGGG GGGAGTTAAAGCTGGACCTATTCCGGAGGATTTCTTTCAGAACACAGTTCCATCCCTTCAGGTTGCTGCTTCACTGCGTC CTGCTGGGACATATCTCTCAAAATATGCTCAAGGGGTTGAAATCGGCAAGGCAACTCAAAACCAGGACAGTGCTTCTGAA GGTGATGTTCCTCCTAAATCTGTTCAACAACCTGGGGTTCCCATTGAGCCCATGGGACTACCTGATGGTGGTGTCCCACC ACAATCCTCAGCTCAGGCTGCAGTCATGCCCACATCACAGCTGCAGGCACCAATTTCTAGCCAGCCTCTTGATCTTAGTG TCCTTGGAGTACCAAATTCTGCTGATTCAGGAAAGCCTCCACAAACTGGTTCTCCACCATCTTCTCTACGACTTGGACAG GTTCCACGAGGGGCTGCTGCTTCTGTATGTTTCAAGACTGGACTTGCTCACCTTGAGCTAAATCATCTTTCAGATGCATT GTCTTGCTTTGATGAATCTTTTCTTGCATTAGCTAAGGATCAATCTTGTGGAAGTGATATAAAAGCCCAGACAACAATCT GTGCTCAATACAAGATAACAGTCACTCTTCTTCGGGAAATAGAACGTTTGCAAAGAGTCCATGGTCCAAGTGCAATCAGT GCAAAAGATGAGATGGCAAGACTTTCACGCCATCTAGGTTCATTGCCTCTTCTAGCAAAGCACAGAATAAATTGCATTCG AACTGCCATAAAACGAAACATGGAGGTGCAAAATTATGCATATTCCAAGCAAATGCTAGAACTACTATTGTCTAAAGCAC CTGCAAGCAAGCAGGATGAATTTAGGTGCCTGATCGATTTGTGTGTTCAGAGGGGTTTGACTAACAAGTCCATTGATCCA CTAGAAGATCCTTCTCATTTCTGCGCTGCCACATTAAGCAGGCTATCGACCATTGGATATGATGTCTGTGATCTATGTGG AGCCAAATTTTCAGCCGTGAATGCTCCTGGATGCGTCATCTGTGGAATGGGAAGCATCAAAAGATCAGATGCACTCACAG GTCCAGCTCCTTCTCCATTTGGTTGA
Protein sequence (LotjaGi2g1v0399300.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGWDGKARTILSISMPYSVLVGALNDRLLLASPTEIIPKRKKEVEVKTCLVGLLEPLLIGFATMQQSFEQKLDLSEILY QITSRFDSLRITPRSLDILARGSPVCGDLAVSLSQSGPQFTQVMRGAYAVKALQFPTALSVLKDEFQRSRDYPRCPPTSH LFHSFRQLGYACIRFGQFDRAKETFEVTADYESMLDLFICHLNPSAMRRLAQKLEEEGLESELRRYCERILRIRSTGWTQ GIFANFAAESMVPKGPEWGGGNWEIKTPATAKDIPKWELAAEVTPYMRTDDAAIPSIILDHIGVYLGSIKGRGNTVEVRE DSLVKAFIPAGNDVKANGVEAPSVQSISNQSKGVDNSQGDSFMGLGGLKKQFVSPSADEQAKAAEEFKKSMYAAAAADGS SSDEEGVSKTKKIHVRIRDKPIDSSTVDVNKIKEAASKFKLGAGLTSSRSRSATSGSHDLGQILSLPPATTGVATPTAST PGDLFGTDAFAQPQSTSQQTTGVVSRGGVKAGPIPEDFFQNTVPSLQVAASLRPAGTYLSKYAQGVEIGKATQNQDSASE GDVPPKSVQQPGVPIEPMGLPDGGVPPQSSAQAAVMPTSQLQAPISSQPLDLSVLGVPNSADSGKPPQTGSPPSSLRLGQ VPRGAAASVCFKTGLAHLELNHLSDALSCFDESFLALAKDQSCGSDIKAQTTICAQYKITVTLLREIERLQRVHGPSAIS AKDEMARLSRHLGSLPLLAKHRINCIRTAIKRNMEVQNYAYSKQMLELLLSKAPASKQDEFRCLIDLCVQRGLTNKSIDP LEDPSHFCAATLSRLSTIGYDVCDLCGAKFSAVNAPGCVICGMGSIKRSDALTGPAPSPFG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 861 | 857 | 0.0 | – | |
| PANTHER | 5 | 861 | 857 | 0.0 | – | |
| MobiDBLite | 443 | 463 | 21 | - | – | |
| MobiDBLite | 443 | 461 | 19 | - | – | |
| MobiDBLite | 552 | 597 | 46 | - | – | |
| MobiDBLite | 612 | 639 | 28 | - | – | |
| MobiDBLite | 622 | 636 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0399300.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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