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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0401000 |
Transcript ID | LotjaGi2g1v0401000.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | CLK4-associating serine/arginine rich; TAIR: AT4G36980.1 CLK4-associating serine/arginine-rich protein; Swiss-Prot: sp|A0JNI5|CLASR_BOVIN CLK4-associating serine/arginine rich protein; TrEMBL-Plants: tr|I1J967|I1J967_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0401000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89856329..89861642) extracted from Lotus japonicus Gifu genome v1.2.
CTGGAAAAGAAGCATGTGGCAGTGGAATTGAGGATTCATTTTCATCCATCGGGTTGGTGTGTCAATCAATCAAATCTCGT GGAATCAAAATTAGGGTTTCCTTTCCATCGATTGCGAGGAAGACGAAGAAGAAGAAGGAGAAGGAACGATGTGGCACGAG GCGAGGAGGTCGGAGAAGAAGGTCCACGACATGATGGACGCGGCTCGAAAGCGAGCACAGAGACGAGCCGTTTACCTTGC CAAGAGGCGCGGCGATCCTCAACAATCCATTCAGCTCGTTGGCTTCCGTTCCCGAACCTATCGAGACGACGCACTTTACC AAGCTACCCAGGATCAGCAGGGCCTGTTAGTCTCTCTTCCTTTTCTCTTTCCGTGGGCACTTTCCTTTTTTACCGCTAAC TAATCATCGTTTATAGGATCGCTTCAAATCTTTCAAGTTGATTTGATTAAGTTTTTGGAATTCATGATGTAATTTGCTGT TTTTAGGGTATTCACATGCAGATTTTAGTTTACTTTTTTAATGTAGTTGATATTATTCTTAGCTCGATTTGTTTCTATTA AATTATACACATAATTAATTTTTAAAGTCTTCAATTTGATTTAAGATCATAAGAGAAGAAATAATTTCATCAGCTTAAAG TGGTTCCTGCAATGTAAGCTGATTTTTTGTACAATTAAGGGCTGAAGTAGTATGGTGTGTTAATCAATGTGCTGGTTTGA TAATGATATGAAGTCCCTTTTGTTAATTGTTAAAGATATCATGTATGATAACTATATCCTCTGAAGTTACTTTAGTTGCA AAATGCACTTCATTTAAGGCTGACTTGGTTGTGCATTTCTGTCTCAGGATACCTTGGAACGGGAAACAGGATATATTGAT TGACAGGTCACAATCTTTCTTCTGTTCTCATGAATGCTGTTATGTAGATTTGATTAGTCATATTAAACTTACTGCTTATC CTATGTCTTGGCAGATTTGATGGCCGTGCTCTACTTGATTTCATTCGGGATAGTAGTCATAGGCGGGTCCAGGAGAAGTC TGAAGAAGAAGAAGAATTAGAAGAGTTTGTTAATTTTGAGCGTTATCGGGATTTAATAAAGCATCGGCGTAGAGGATGTC GGTACTTTTTTATTTCTCGACAACGAGTTTGATTCTGATAACCTCTAGTAGTTTGCTTATTGTTGTTTTTGTATCTATTC TTTTCCTTCTCCATTGTCCATCGACTAATCAACTATTCATGATAAAGCAATACATACAAAAGGTTGTATCTATGACATCT AGGGAGTAATTTTCAAGCTGTATTTACAAACTAGGTTTTTAATCTGAACAGTTACTGATGAAGAGGCTTTGCAACATGTA AATCAAGAGATGGAGGCCAAGTCTGCTCTTCCATTTATGTCAGACAGGTACCCCTTTCAATCATATTTAACTAGTTGTTT AGTCATTTAATGCCGAAAAGGAATAATGTATCAATAAATGCGCATAGACATGGTTTGCATATGTAAAAAAGTTATAATCT ATTGGGTTTGAGTTTGTTTCCAGGTTCTCAATGCAAAGTCATAGTAATTTTCTTAAGCAATATCTTATAACAGTATTTTG TTTCCATAAAATACTCTGATTATTTTGAGTGTTTCCATTGAATTGCTTTTGGTTTTTTCAATGGATCCACTGTTTGACTT TGTTTCTATCTAATTTTGGAAGAGTAGTTTTAACATATTGTTCATGAAATAGTTTGCAGTCCATTTTTTTAAAAATTTAG TCCTTGAGGATTCGTCATCGCTTTTATCTGCAACTTTTTATGATATGTTATTGGAATACTTCATGATAGATAAGCTTATT TTGTTTACCCTCATGTGCATTTGTAGATCTAATTTGCCACAGCCTGCTGCAAACAAAGGATCCTATTCACAGGTTGGGTT TTCTTATGGTGGGAATGGAAAAGAAGAATCCCAGATTTCAGATGATGATGATGATAATGACAATGAGGAAGACGAAGACG ACGAGGATGATGAGGATTTTAACAGTGATGATAGTAATGATGAAGGAATGGAGATAATTGCAAAAGAATTTGGGGTTAAG AGATACGGTTGGCTTGTTTACATGGATAAGAAAGCTAAGGAAGAAGAAAAAAGGCAAAAAGAGATGATCAAAGGTGACCC TGCAATTGTAAGTGGAACATTCTTAGTAAGAATGAATAATATTTTTGTTAAGAGTATTGTACAGATGTTCTTTACTGGCA TATATAATTTGTGTAGAGAAAGCTGAGTCGTAAGGAAAGGAGAAAGGCTTCTCAGATTGAAAGGGAGAGGGAGAGAGAAT CTACACGGGTATCTGGAACTCGTGTGCTGCACCATGATCCCTATCGGTAATATTAATATTTTCATGTTTTCATATTGACC AAAGAATATAGTATATTTTTCTCATCGGCAAGCTTGATAGCTGTTCATTTTTTATTTCTTGTATACCTGTCTTAGTTACG CACTCAATCTATATATGCAGGGAACCCAGGCGAAGTCCTACTTATGAAGCTTATTCTCGTTCCAGAAGGTATACCACTGC TTGTCAAGGTCTTTCTGGTTGATGTTATTTATGTCTTATGTATTAATTTTACGGATTGCTCATACTTATTTTGAAGGAAG TCTTATTAGTTATGATTGTCATTTTCAACTTACAGGTCAAGGTCGCGGTCCTACTCTCCGTCACACTCGAGGCGTTATTC TCGCAGTAGTCATTCTGATGATATTTACCGAAGCAAACCAAGGACTCCTAAAATAGAATACATTACTGAATTTGGGGGCT CTGGAGAAACAGCTGAACCCAGGCGTGAAGGATTTTCTCCGCCACGATCTCCTCCATCTCATGTTGATATGTTAAACCGG TCGGAGCACTGGACCTTTAATTCTTGCAAGATAGATTGGACAGTCTTTTCTCTGCGCAGCATAACACCTATATTGTTTGC CTGAGGCATTTTTTTTGGTTTAGAATAGATCAGGACTAGGGTTGTGAGGGTAACTGCCAAAAGGAGGAGGGAGGCTTCCT ATTTAAAGCTCATTGTTCCTTGAAATGAATTTTGCATAACTAACTGTGAGTTGCATGGAAATATCACGGAGATTTTTTCT AATTCCTCTACTGTCTTCCAGGTCATCATCTGGTTGCATACTTGAGGCATTGCATGTCGATCCTGCTTCTGGTGTATCTA TTGATAAGGATAAGGGCACTAAAGTATGGAAGCCATCAGTGAGGTATGCTATCACCCAACTGTGTTTATGTGAAGGGAGT TTTATTGTATATGGTTTTTGTGGTACCCTCTGTTTCATTAACCATTAGATTTCCTATGAACATTCTTCCATGTCCATCTG ACAGTTATAATGCTGCAAATTAATCATGGGTTATTTCTGCTTTATGTTCCTTATTTCTTTCTTCAGCTTGTTTCTTAGGG GTATTGCAAATGGATATTTCATTTTTTCTTTTAGTTGTCTTTCCTTTCTTCAATATGAATATCTTTTTATTTTTATTTTT CTTATTGCTGTTCTCTTTTCCACAGCACTTCATCAGCATTAGCAAAATTGAAGGCAAGTGGTTCTGGAGGGCCCTTGAAA CCTCTACAAGGGGAGAAGAAAGAAACTCCTCAAGAAAGACTCAAAAGGATCATGAACAGGCAACTAACCAAACAAAGTAT GACTGTTTGTATAATTTATTTTAGTTACGTATCAAAAGAAATTTGAAACATATTCTGTTTTACTGCACTACTTCTCTTTG CATTCTACTCATTCTTTTCCGGAGCAAGTCTAGCGGGATTTATGTAAATTCTAAATCTGTTCGTGATATAATTGCAAGTG TTTCTCTGTGTAGTTAAGAAGGATACTGCGGCAGAACTGGCCAAGAAAAAGGAACAGGAGAAGCAGAGACAGGAAAAGCT CGCTGAATCTAATCGATTGAGTCGGTATAGACACCGCAGCAGGAGTAACAGCCGTTCCCCTCCAAGGTATTTCATCACAC TCTGCACACGTTAGATGATTGTGTGCATTTTGATTTAATGTATTATTCACAAGATAAAAATCTGTAGCCTATGGTTTAAT GTAACGGGGTTCAGAATACATGACCTTTGTTATTAAGAGTTTAAGACAACAGTTGCCTCTAGTTGACTTGGCAAAATTGA CCTAATTTTCCTTTAGGAACATCAGTTTTTTCTGCTGTTAACTTATATTAGATAACTGGCCAACGTTTTCTGTTTTATGG GTCACAAGTTCAAGGATATATATATACTATTGGATAAATATTAAATACAAAGTTGAGGGGTACCTTCATTCCCAACCCTG ATGCCCCCTAGGTGGTGTGATTCCTCACTGGTGCTGTTGTTCTGTATTTCATTTTAATCAAATGACTGTATAATGTATAC TGAGTGACTTGTAATTTAAAGTAATACCATTAACATGTTAGTAGATTTCTGAGATGGGTGACTAGTGGAATGGGTAACAA TTAGTCAAATTGCTGTTAAGTCAGTACATAGAGCCCTGCTGTGTATTTTTCTCATTTATTAGTATTGAGATTATATGATT TACTGCAGAAGATACAGACGTAGTAGAAGTCCAAGTAGAAGCAGGAGTTCCAGAAGACATTATTCTTCTTCTCGTTCTGG TTCCCCGTCCCCTTCACGAACTCATTCCCGGTCTCGCTCCCGGTCTCGTTCTCGATCCCCTTATTCCCGTTCTCCCAGGT AATCAACTTGGTTTTTATTTGTCTATGCCTTGAAAGTTATGCCACAGCATCATCTTAATCATGAAAGACTGACTCAGAAC ACATTTCAGGAAAAGAAACCGTTCAAGGCACTGATGGGATGCTGTATGCATGTAGAAAGGCTGATAAATTTGTGTGCAAT TTGTTTATATATGAATTTTACTACTTCGAATTGGATGTTGTGTTGGAAATTGCAGTAGGCAATCTTTTTGTGCATGTCGC TGAATCATTTGGTAATGTATATTTATACGAATGAATTGAGTAATTTTATATCTCAGTCGTATGAGGTACATATTTCTCAG TCGTACAGACTTCAACCTGTATTTTTTCAGTTCCAGTGGTAAACAGTGAAAGGATTGGTAATTGACTTCATTATTAATTG CAATCATAATGAGTTGCATTAGAGCATCTCCAATGCAAGGTTCTTAGTTCTTATTTTTTAGTTAAGAACTAAGAACTGAG TTCTTAACCATTGTAGGAGATGACGTGAAGTTCTTAGTTCTTAAAAATAAGAACTAGGTTCTTATATAAGATGTTTTACT TTTTGAGTTCTTAGTATGAAAAGTTAATTTTTTC
CDS sequence (LotjaGi2g1v0401000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGCACGAGGCGAGGAGGTCGGAGAAGAAGGTCCACGACATGATGGACGCGGCTCGAAAGCGAGCACAGAGACGAGC CGTTTACCTTGCCAAGAGGCGCGGCGATCCTCAACAATCCATTCAGCTCGTTGGCTTCCGTTCCCGAACCTATCGAGACG ACGCACTTTACCAAGCTACCCAGGATCAGCAGGGCCTGATACCTTGGAACGGGAAACAGGATATATTGATTGACAGATTT GATGGCCGTGCTCTACTTGATTTCATTCGGGATAGTAGTCATAGGCGGGTCCAGGAGAAGTCTGAAGAAGAAGAAGAATT AGAAGAGTTTGTTAATTTTGAGCGTTATCGGGATTTAATAAAGCATCGGCGTAGAGGATTTACTGATGAAGAGGCTTTGC AACATGTAAATCAAGAGATGGAGGCCAAGTCTGCTCTTCCATTTATGTCAGACAGATCTAATTTGCCACAGCCTGCTGCA AACAAAGGATCCTATTCACAGGTTGGGTTTTCTTATGGTGGGAATGGAAAAGAAGAATCCCAGATTTCAGATGATGATGA TGATAATGACAATGAGGAAGACGAAGACGACGAGGATGATGAGGATTTTAACAGTGATGATAGTAATGATGAAGGAATGG AGATAATTGCAAAAGAATTTGGGGTTAAGAGATACGGTTGGCTTGTTTACATGGATAAGAAAGCTAAGGAAGAAGAAAAA AGGCAAAAAGAGATGATCAAAGGTGACCCTGCAATTAGAAAGCTGAGTCGTAAGGAAAGGAGAAAGGCTTCTCAGATTGA AAGGGAGAGGGAGAGAGAATCTACACGGGTATCTGGAACTCGTGTGCTGCACCATGATCCCTATCGGGAACCCAGGCGAA GTCCTACTTATGAAGCTTATTCTCGTTCCAGAAGGTCAAGGTCGCGGTCCTACTCTCCGTCACACTCGAGGCGTTATTCT CGCAGTAGTCATTCTGATGATATTTACCGAAGCAAACCAAGGACTCCTAAAATAGAATACATTACTGAATTTGGGGGCTC TGGAGAAACAGCTGAACCCAGGCGTGAAGGATTTTCTCCGCCACGATCTCCTCCATCTCATGTTGATATGTTAAACCGGT CATCATCTGGTTGCATACTTGAGGCATTGCATGTCGATCCTGCTTCTGGTGTATCTATTGATAAGGATAAGGGCACTAAA GTATGGAAGCCATCAGTGAGCACTTCATCAGCATTAGCAAAATTGAAGGCAAGTGGTTCTGGAGGGCCCTTGAAACCTCT ACAAGGGGAGAAGAAAGAAACTCCTCAAGAAAGACTCAAAAGGATCATGAACAGGCAACTAACCAAACAAATTAAGAAGG ATACTGCGGCAGAACTGGCCAAGAAAAAGGAACAGGAGAAGCAGAGACAGGAAAAGCTCGCTGAATCTAATCGATTGAGT CGGTATAGACACCGCAGCAGGAGTAACAGCCGTTCCCCTCCAAGAAGATACAGACGTAGTAGAAGTCCAAGTAGAAGCAG GAGTTCCAGAAGACATTATTCTTCTTCTCGTTCTGGTTCCCCGTCCCCTTCACGAACTCATTCCCGGTCTCGCTCCCGGT CTCGTTCTCGATCCCCTTATTCCCGTTCTCCCAGGAAAAGAAACCGTTCAAGGCACTGA
Protein sequence (LotjaGi2g1v0401000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWHEARRSEKKVHDMMDAARKRAQRRAVYLAKRRGDPQQSIQLVGFRSRTYRDDALYQATQDQQGLIPWNGKQDILIDRF DGRALLDFIRDSSHRRVQEKSEEEEELEEFVNFERYRDLIKHRRRGFTDEEALQHVNQEMEAKSALPFMSDRSNLPQPAA NKGSYSQVGFSYGGNGKEESQISDDDDDNDNEEDEDDEDDEDFNSDDSNDEGMEIIAKEFGVKRYGWLVYMDKKAKEEEK RQKEMIKGDPAIRKLSRKERRKASQIERERERESTRVSGTRVLHHDPYREPRRSPTYEAYSRSRRSRSRSYSPSHSRRYS RSSHSDDIYRSKPRTPKIEYITEFGGSGETAEPRREGFSPPRSPPSHVDMLNRSSSGCILEALHVDPASGVSIDKDKGTK VWKPSVSTSSALAKLKASGSGGPLKPLQGEKKETPQERLKRIMNRQLTKQIKKDTAAELAKKKEQEKQRQEKLAESNRLS RYRHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSRSPRKRNRSRH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 536 | 536 | 5.0E-157 | ||
PANTHER | 1 | 536 | 536 | 5.0E-157 | – | |
SMART | 39 | 176 | 138 | 8.4E-56 | ||
Pfam | 41 | 174 | 134 | 4.9E-36 | ||
MobiDBLite | 149 | 215 | 67 | - | – | |
MobiDBLite | 150 | 178 | 29 | - | – | |
MobiDBLite | 181 | 209 | 29 | - | – | |
MobiDBLite | 236 | 372 | 137 | - | – | |
MobiDBLite | 236 | 305 | 70 | - | – | |
Coils | 252 | 272 | 21 | - | – | |
MobiDBLite | 319 | 337 | 19 | - | – | |
MobiDBLite | 390 | 552 | 163 | - | – | |
MobiDBLite | 430 | 482 | 53 | - | – | |
Coils | 449 | 476 | 28 | - | – | |
MobiDBLite | 483 | 512 | 30 | - | – | |
MobiDBLite | 513 | 527 | 15 | - | – | |
MobiDBLite | 528 | 552 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0401000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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