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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0401000 |
| Transcript ID | LotjaGi2g1v0401000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CLK4-associating serine/arginine rich; TAIR: AT4G36980.1 CLK4-associating serine/arginine-rich protein; Swiss-Prot: sp|A0JNI5|CLASR_BOVIN CLK4-associating serine/arginine rich protein; TrEMBL-Plants: tr|I1J967|I1J967_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0401000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89856477..89861162) extracted from Lotus japonicus Gifu genome v1.2.
ATGTGGCACGAGGCGAGGAGGTCGGAGAAGAAGGTCCACGACATGATGGACGCGGCTCGAAAGCGAGCACAGAGACGAGC CGTTTACCTTGCCAAGAGGCGCGGCGATCCTCAACAATCCATTCAGCTCGTTGGCTTCCGTTCCCGAACCTATCGAGACG ACGCACTTTACCAAGCTACCCAGGATCAGCAGGGCCTGTTAGTCTCTCTTCCTTTTCTCTTTCCGTGGGCACTTTCCTTT TTTACCGCTAACTAATCATCGTTTATAGGATCGCTTCAAATCTTTCAAGTTGATTTGATTAAGTTTTTGGAATTCATGAT GTAATTTGCTGTTTTTAGGGTATTCACATGCAGATTTTAGTTTACTTTTTTAATGTAGTTGATATTATTCTTAGCTCGAT TTGTTTCTATTAAATTATACACATAATTAATTTTTAAAGTCTTCAATTTGATTTAAGATCATAAGAGAAGAAATAATTTC ATCAGCTTAAAGTGGTTCCTGCAATGTAAGCTGATTTTTTGTACAATTAAGGGCTGAAGTAGTATGGTGTGTTAATCAAT GTGCTGGTTTGATAATGATATGAAGTCCCTTTTGTTAATTGTTAAAGATATCATGTATGATAACTATATCCTCTGAAGTT ACTTTAGTTGCAAAATGCACTTCATTTAAGGCTGACTTGGTTGTGCATTTCTGTCTCAGGATACCTTGGAACGGGAAACA GGATATATTGATTGACAGGTCACAATCTTTCTTCTGTTCTCATGAATGCTGTTATGTAGATTTGATTAGTCATATTAAAC TTACTGCTTATCCTATGTCTTGGCAGATTTGATGGCCGTGCTCTACTTGATTTCATTCGGGATAGTAGTCATAGGCGGGT CCAGGAGAAGTCTGAAGAAGAAGAAGAATTAGAAGAGTTTGTTAATTTTGAGCGTTATCGGGATTTAATAAAGCATCGGC GTAGAGGATGTCGGTACTTTTTTATTTCTCGACAACGAGTTTGATTCTGATAACCTCTAGTAGTTTGCTTATTGTTGTTT TTGTATCTATTCTTTTCCTTCTCCATTGTCCATCGACTAATCAACTATTCATGATAAAGCAATACATACAAAAGGTTGTA TCTATGACATCTAGGGAGTAATTTTCAAGCTGTATTTACAAACTAGGTTTTTAATCTGAACAGTTACTGATGAAGAGGCT TTGCAACATGTAAATCAAGAGATGGAGGCCAAGTCTGCTCTTCCATTTATGTCAGACAGGTACCCCTTTCAATCATATTT AACTAGTTGTTTAGTCATTTAATGCCGAAAAGGAATAATGTATCAATAAATGCGCATAGACATGGTTTGCATATGTAAAA AAGTTATAATCTATTGGGTTTGAGTTTGTTTCCAGGTTCTCAATGCAAAGTCATAGTAATTTTCTTAAGCAATATCTTAT AACAGTATTTTGTTTCCATAAAATACTCTGATTATTTTGAGTGTTTCCATTGAATTGCTTTTGGTTTTTTCAATGGATCC ACTGTTTGACTTTGTTTCTATCTAATTTTGGAAGAGTAGTTTTAACATATTGTTCATGAAATAGTTTGCAGTCCATTTTT TTAAAAATTTAGTCCTTGAGGATTCGTCATCGCTTTTATCTGCAACTTTTTATGATATGTTATTGGAATACTTCATGATA GATAAGCTTATTTTGTTTACCCTCATGTGCATTTGTAGATCTAATTTGCCACAGCCTGCTGCAAACAAAGGATCCTATTC ACAGGTTGGGTTTTCTTATGGTGGGAATGGAAAAGAAGAATCCCAGATTTCAGATGATGATGATGATAATGACAATGAGG AAGACGAAGACGACGAGGATGATGAGGATTTTAACAGTGATGATAGTAATGATGAAGGAATGGAGATAATTGCAAAAGAA TTTGGGGTTAAGAGATACGGTTGGCTTGTTTACATGGATAAGAAAGCTAAGGAAGAAGAAAAAAGGCAAAAAGAGATGAT CAAAGGTGACCCTGCAATTGTAAGTGGAACATTCTTAGTAAGAATGAATAATATTTTTGTTAAGAGTATTGTACAGATGT TCTTTACTGGCATATATAATTTGTGTAGAGAAAGCTGAGTCGTAAGGAAAGGAGAAAGGCTTCTCAGATTGAAAGGGAGA GGGAGAGAGAATCTACACGGGTATCTGGAACTCGTGTGCTGCACCATGATCCCTATCGGTAATATTAATATTTTCATGTT TTCATATTGACCAAAGAATATAGTATATTTTTCTCATCGGCAAGCTTGATAGCTGTTCATTTTTTATTTCTTGTATACCT GTCTTAGTTACGCACTCAATCTATATATGCAGGGAACCCAGGCGAAGTCCTACTTATGAAGCTTATTCTCGTTCCAGAAG GTATACCACTGCTTGTCAAGGTCTTTCTGGTTGATGTTATTTATGTCTTATGTATTAATTTTACGGATTGCTCATACTTA TTTTGAAGGAAGTCTTATTAGTTATGATTGTCATTTTCAACTTACAGGTCAAGGTCGCGGTCCTACTCTCCGTCACACTC GAGGCGTTATTCTCGCAGTAGTCATTCTGATGATATTTACCGAAGCAAACCAAGGACTCCTAAAATAGAATACATTACTG AATTTGGGGGCTCTGGAGAAACAGCTGAACCCAGGCGTGAAGGATTTTCTCCGCCACGATCTCCTCCATCTCATGTTGAT ATGTTAAACCGGTCGGAGCACTGGACCTTTAATTCTTGCAAGATAGATTGGACAGTCTTTTCTCTGCGCAGCATAACACC TATATTGTTTGCCTGAGGCATTTTTTTTGGTTTAGAATAGATCAGGACTAGGGTTGTGAGGGTAACTGCCAAAAGGAGGA GGGAGGCTTCCTATTTAAAGCTCATTGTTCCTTGAAATGAATTTTGCATAACTAACTGTGAGTTGCATGGAAATATCACG GAGATTTTTTCTAATTCCTCTACTGTCTTCCAGGTCATCATCTGGTTGCATACTTGAGGCATTGCATGTCGATCCTGCTT CTGGTGTATCTATTGATAAGGATAAGGGCACTAAAGTATGGAAGCCATCAGTGAGGTATGCTATCACCCAACTGTGTTTA TGTGAAGGGAGTTTTATTGTATATGGTTTTTGTGGTACCCTCTGTTTCATTAACCATTAGATTTCCTATGAACATTCTTC CATGTCCATCTGACAGTTATAATGCTGCAAATTAATCATGGGTTATTTCTGCTTTATGTTCCTTATTTCTTTCTTCAGCT TGTTTCTTAGGGGTATTGCAAATGGATATTTCATTTTTTCTTTTAGTTGTCTTTCCTTTCTTCAATATGAATATCTTTTT ATTTTTATTTTTCTTATTGCTGTTCTCTTTTCCACAGCACTTCATCAGCATTAGCAAAATTGAAGGCAAGTGGTTCTGGA GGGCCCTTGAAACCTCTACAAGGGGAGAAGAAAGAAACTCCTCAAGAAAGACTCAAAAGGATCATGAACAGGCAACTAAC CAAACAAAGTATGACTGTTTGTATAATTTATTTTAGTTACGTATCAAAAGAAATTTGAAACATATTCTGTTTTACTGCAC TACTTCTCTTTGCATTCTACTCATTCTTTTCCGGAGCAAGTCTAGCGGGATTTATGTAAATTCTAAATCTGTTCGTGATA TAATTGCAAGTGTTTCTCTGTGTAGTTAAGAAGGATACTGCGGCAGAACTGGCCAAGAAAAAGGAACAGGAGAAGCAGAG ACAGGAAAAGCTCGCTGAATCTAATCGATTGAGTCGGTATAGACACCGCAGCAGGAGTAACAGCCGTTCCCCTCCAAGGT ATTTCATCACACTCTGCACACGTTAGATGATTGTGTGCATTTTGATTTAATGTATTATTCACAAGATAAAAATCTGTAGC CTATGGTTTAATGTAACGGGGTTCAGAATACATGACCTTTGTTATTAAGAGTTTAAGACAACAGTTGCCTCTAGTTGACT TGGCAAAATTGACCTAATTTTCCTTTAGGAACATCAGTTTTTTCTGCTGTTAACTTATATTAGATAACTGGCCAACGTTT TCTGTTTTATGGGTCACAAGTTCAAGGATATATATATACTATTGGATAAATATTAAATACAAAGTTGAGGGGTACCTTCA TTCCCAACCCTGATGCCCCCTAGGTGGTGTGATTCCTCACTGGTGCTGTTGTTCTGTATTTCATTTTAATCAAATGACTG TATAATGTATACTGAGTGACTTGTAATTTAAAGTAATACCATTAACATGTTAGTAGATTTCTGAGATGGGTGACTAGTGG AATGGGTAACAATTAGTCAAATTGCTGTTAAGTCAGTACATAGAGCCCTGCTGTGTATTTTTCTCATTTATTAGTATTGA GATTATATGATTTACTGCAGAAGATACAGACGTAGTAGAAGTCCAAGTAGAAGCAGGAGTTCCAGAAGACATTATTCTTC TTCTCGTTCTGGTTCCCCGTCCCCTTCACGAACTCATTCCCGGTCTCGCTCCCGGTCTCGTTCTCGATCCCCTTATTCCC GTTCTCCCAGGTAATCAACTTGGTTTTTATTTGTCTATGCCTTGAAAGTTATGCCACAGCATCATCTTAATCATGAAAGA CTGACTCAGAACACATTTCAGGAAAAGAAACCGTTCAAGGCACTGA
CDS sequence (LotjaGi2g1v0401000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGCACGAGGCGAGGAGGTCGGAGAAGAAGGTCCACGACATGATGGACGCGGCTCGAAAGCGAGCACAGAGACGAGC CGTTTACCTTGCCAAGAGGCGCGGCGATCCTCAACAATCCATTCAGCTCGTTGGCTTCCGTTCCCGAACCTATCGAGACG ACGCACTTTACCAAGCTACCCAGGATCAGCAGGGCCTGATACCTTGGAACGGGAAACAGGATATATTGATTGACAGATTT GATGGCCGTGCTCTACTTGATTTCATTCGGGATAGTAGTCATAGGCGGGTCCAGGAGAAGTCTGAAGAAGAAGAAGAATT AGAAGAGTTTGTTAATTTTGAGCGTTATCGGGATTTAATAAAGCATCGGCGTAGAGGATTTACTGATGAAGAGGCTTTGC AACATGTAAATCAAGAGATGGAGGCCAAGTCTGCTCTTCCATTTATGTCAGACAGATCTAATTTGCCACAGCCTGCTGCA AACAAAGGATCCTATTCACAGGTTGGGTTTTCTTATGGTGGGAATGGAAAAGAAGAATCCCAGATTTCAGATGATGATGA TGATAATGACAATGAGGAAGACGAAGACGACGAGGATGATGAGGATTTTAACAGTGATGATAGTAATGATGAAGGAATGG AGATAATTGCAAAAGAATTTGGGGTTAAGAGATACGGTTGGCTTGTTTACATGGATAAGAAAGCTAAGGAAGAAGAAAAA AGGCAAAAAGAGATGATCAAAGGTGACCCTGCAATTAGAAAGCTGAGTCGTAAGGAAAGGAGAAAGGCTTCTCAGATTGA AAGGGAGAGGGAGAGAGAATCTACACGGGTATCTGGAACTCGTGTGCTGCACCATGATCCCTATCGGGAACCCAGGCGAA GTCCTACTTATGAAGCTTATTCTCGTTCCAGAAGGTCAAGGTCGCGGTCCTACTCTCCGTCACACTCGAGGCGTTATTCT CGCAGTAGTCATTCTGATGATATTTACCGAAGCAAACCAAGGACTCCTAAAATAGAATACATTACTGAATTTGGGGGCTC TGGAGAAACAGCTGAACCCAGGCGTGAAGGATTTTCTCCGCCACGATCTCCTCCATCTCATGTTGATATGTTAAACCGGT CATCATCTGGTTGCATACTTGAGGCATTGCATGTCGATCCTGCTTCTGGTGTATCTATTGATAAGGATAAGGGCACTAAA GTATGGAAGCCATCAATTTCCACTTCATCAGCATTAGCAAAATTGAAGGCAAGTGGTTCTGGAGGGCCCTTGAAACCTCT ACAAGGGGAGAAGAAAGAAACTCCTCAAGAAAGACTCAAAAGGATCATGAACAGGCAACTAACCAAACAAATTAAGAAGG ATACTGCGGCAGAACTGGCCAAGAAAAAGGAACAGGAGAAGCAGAGACAGGAAAAGCTCGCTGAATCTAATCGATTGAGT CGGTATAGACACCGCAGCAGGAGTAACAGCCGTTCCCCTCCAAGAAGATACAGACGTAGTAGAAGTCCAAGTAGAAGCAG GAGTTCCAGAAGACATTATTCTTCTTCTCGTTCTGGTTCCCCGTCCCCTTCACGAACTCATTCCCGGTCTCGCTCCCGGT CTCGTTCTCGATCCCCTTATTCCCGTTCTCCCAGGAAAAGAAACCGTTCAAGGCACTGA
Protein sequence (LotjaGi2g1v0401000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWHEARRSEKKVHDMMDAARKRAQRRAVYLAKRRGDPQQSIQLVGFRSRTYRDDALYQATQDQQGLIPWNGKQDILIDRF DGRALLDFIRDSSHRRVQEKSEEEEELEEFVNFERYRDLIKHRRRGFTDEEALQHVNQEMEAKSALPFMSDRSNLPQPAA NKGSYSQVGFSYGGNGKEESQISDDDDDNDNEEDEDDEDDEDFNSDDSNDEGMEIIAKEFGVKRYGWLVYMDKKAKEEEK RQKEMIKGDPAIRKLSRKERRKASQIERERERESTRVSGTRVLHHDPYREPRRSPTYEAYSRSRRSRSRSYSPSHSRRYS RSSHSDDIYRSKPRTPKIEYITEFGGSGETAEPRREGFSPPRSPPSHVDMLNRSSSGCILEALHVDPASGVSIDKDKGTK VWKPSISTSSALAKLKASGSGGPLKPLQGEKKETPQERLKRIMNRQLTKQIKKDTAAELAKKKEQEKQRQEKLAESNRLS RYRHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSRSPRKRNRSRH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 536 | 536 | 1.1E-156 | ||
| PANTHER | 1 | 536 | 536 | 1.1E-156 | – | |
| SMART | 39 | 176 | 138 | 8.4E-56 | ||
| Pfam | 41 | 174 | 134 | 4.9E-36 | ||
| MobiDBLite | 149 | 215 | 67 | - | – | |
| MobiDBLite | 150 | 178 | 29 | - | – | |
| MobiDBLite | 181 | 209 | 29 | - | – | |
| MobiDBLite | 236 | 305 | 70 | - | – | |
| MobiDBLite | 236 | 372 | 137 | - | – | |
| Coils | 252 | 272 | 21 | - | – | |
| MobiDBLite | 319 | 337 | 19 | - | – | |
| MobiDBLite | 406 | 552 | 147 | - | – | |
| MobiDBLite | 430 | 482 | 53 | - | – | |
| Coils | 449 | 476 | 28 | - | – | |
| MobiDBLite | 483 | 512 | 30 | - | – | |
| MobiDBLite | 513 | 527 | 15 | - | – | |
| MobiDBLite | 528 | 552 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0401000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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