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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0405100 |
| Transcript ID | LotjaGi2g1v0405100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT4G37260.1 myb domain protein 73; Swiss-Prot: sp|Q9FDW1|MYB44_ARATH Transcription factor MYB44; TrEMBL-Plants: tr|V5T7X2|V5T7X2_ARAHY Putative MYB-related protein 20; Found in the gene: LotjaGi2g1v0405100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90198648..90201084) extracted from Lotus japonicus Gifu genome v1.2.
CACACACATAACATAACTATCCCACTTTCTTTCCCTATCTCGTGACTCTCACTTTCTCCCCCCTGTAATTAACTGAAATT TTAATTAAAGGCTCTGTCTGTTTGTTTCCAAGGCAAAAGTGGAGGCTATAATTAAGTGGAGCGTTATGTGTGTGAGTGCG TGTTCGAGACGCGCTTTTGCATGGGAAAAGAATTGATTGATTGTTTTGAAAGGATAAAAGAGGAAAGAGGGAGGGTGAGT TGTGTAAATGGAAGCAGCTAAGAAGTGACGCGTGTCCGATTACAGCTGTATCCCAAATCCCAAAGCCAACCGCTTCCCTG GAATAAGCGGTACCGATTGCTGCACATAACGCTCTCTCACAACTCCCAAACCTAACTGGCCCAACCGGTTTCCACTTACC CTCTTCTTCTCACATATAAACCAACCCTAGCTTCTTCAAATCAAACCAATGCTCCATTCAAATCTCTAGTAACGAAAATG GACACAAACACCAACACCAACACCAGCATCACCAAAATGGATCGGATCAAGGGTCCATGGAGTCCGGAGGAGGATGAAGC TTTGCAGAGGCTGGTGGAGAAGCACGGCCCGAGGAACTGGTCGCTGATCAGCAAGTCGATTCCGGGGAGGTCTGGGAAAT CGTGCAGGCTGCGGTGGTGTAATCAGTTGTCGCCTCAGGTGGAGCACCGTGCCTTCACGGCGGAGGAGGATGACACCATA ATCAGAGCCCATGCCCGATTCGGTAACAAGTGGGCCACCATCGCCAGACTCCTCTCCGGGAGGACTGATAACGCGATTAA GAATCACTGGAACTCTACCTTGAAGCGGAAGTGCGCTTCCTTCATGATGGATGACCACAACGCGCCGCCGCTTAAGAGGT CTGTTAGCGCCGGCGCCGCCACGCCGGTTTCCACCGGGCTCTACATGAACCCGCCGTCTCCGGGGAGTCCCTCCGGATCT GATGTCAGCGAGTCCAGCGTACCGGTGTGTACCCCCTCCGCCGCCGCCGCCGCGCATGTTTTCCGACCTGTGCCGAGGAC CGGCGGGGTTCTACCTCCCGTAGAAACGACGTCGTCCTCCAATGACCCTCCAACTTCACTTTCCCTCTCTCTCCCCGGCG TGGATTCAACATCGGAGGAAACCGCTCCTGCTCCTGCTCAGCCGCCAAGTGCTATTCCTTTGCTGCCGATAATGGCGGCG CCGGTTCAGTTGGTGGTGCCGCCCCAACCTCAGGTACAGGATCCGTCAACGGCGGTGATGCAGAAGGTTTCAGGGCCGTT CAATTTCAGTGCGGAGTTGCTGGGTGTGATGCAGGAGATGATAAAGAAAGAGGTGAGGAGTTATATGCAGCAGAATGGGA TGTGTTATTCTCATGGAAGTGATGATGGGTTCAGGAACGCTGCGGTGAAACGAATTGGGATTAGCAGAATCGATTCGTAG ATTACATGATCAGAGAAAGAAACTGGAAATGAACAACAAGAAAACTAGATGGGGATCGATCAGAGAGGGAAAAAAATGAT GGTGCTTTGAAAGTGAAGCTCTTAATTTCTTTGCTGTTTTTGTTTCCCCTTGTTTATTTTAGGAAATAATTTTGGTGAAT GGTGAATCAATGTACAGAGTGAAAACTCGTTTACTAGGGAAAAATGGGTGGGATGGCAATCAGGGAATGAATTGAAAATT ATTTCTGGGGATCGAAAAGGGGAGGAAAAATCTGCAACTCTTTATGGTTCTTTGTCCTGAACTCCAGGCTTAGTTGGAAG GAAGAAAGGGATAACAAGTTTAGAATAAAAAAAGTTCAAAAATTCATATAATTTCAACTCTTTCTTTCATATATCCCTAT GCACAATCCGAAAATTTTCAATTATCGAATTTAATAGCAAGCATTTAGGCTAAATGTTTCAATTTCAAAGGTGGAATCAA TGAAATTTTAAAGCTGAAATATTCAATCACTGTATTTGAAAGTGGTTAAATTAGCTTAGTGAAGCGATGCTAGTTTATAT ATGCAGTTTCTATGTTTGGGACCCAAAGCAAACAGATCCAATATAATGGAGTGATAATTCTACGGGATAAGAATAACTAG CAACTACTGCTGCTGATTAAACCTAATGTTTCAGCAATGAACAGTTTAGTGAATCAGGAGTATATCCCTTGTTCATATAA GATTGAGTTGAGCTGACTACACACCGCATGAAATCGCTTAAAGAATAAATCACGAGCTTAATTTTTAATTTTTCATGCAC ATGACTACACATCACAAATATGATGAATTGAGCTATTCTTTCGGGATATAGATATTTCCCACGAGATAATCTTGTTTTAG TCTTTCCCGATATAGATATTTCCCACGAGATTGTCTTGTTTTAGTCAAAAATATTTACATTACGGTGGAGCGTTAACTCT TCTAACGGATGTTTTATCCATCTACATGACTCGAACA
CDS sequence (LotjaGi2g1v0405100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACACAAACACCAACACCAACACCAGCATCACCAAAATGGATCGGATCAAGGGTCCATGGAGTCCGGAGGAGGATGA AGCTTTGCAGAGGCTGGTGGAGAAGCACGGCCCGAGGAACTGGTCGCTGATCAGCAAGTCGATTCCGGGGAGGTCTGGGA AATCGTGCAGGCTGCGGTGGTGTAATCAGTTGTCGCCTCAGGTGGAGCACCGTGCCTTCACGGCGGAGGAGGATGACACC ATAATCAGAGCCCATGCCCGATTCGGTAACAAGTGGGCCACCATCGCCAGACTCCTCTCCGGGAGGACTGATAACGCGAT TAAGAATCACTGGAACTCTACCTTGAAGCGGAAGTGCGCTTCCTTCATGATGGATGACCACAACGCGCCGCCGCTTAAGA GGTCTGTTAGCGCCGGCGCCGCCACGCCGGTTTCCACCGGGCTCTACATGAACCCGCCGTCTCCGGGGAGTCCCTCCGGA TCTGATGTCAGCGAGTCCAGCGTACCGGTGTGTACCCCCTCCGCCGCCGCCGCCGCGCATGTTTTCCGACCTGTGCCGAG GACCGGCGGGGTTCTACCTCCCGTAGAAACGACGTCGTCCTCCAATGACCCTCCAACTTCACTTTCCCTCTCTCTCCCCG GCGTGGATTCAACATCGGAGGAAACCGCTCCTGCTCCTGCTCAGCCGCCAAGTGCTATTCCTTTGCTGCCGATAATGGCG GCGCCGGTTCAGTTGGTGGTGCCGCCCCAACCTCAGGTACAGGATCCGTCAACGGCGGTGATGCAGAAGGTTTCAGGGCC GTTCAATTTCAGTGCGGAGTTGCTGGGTGTGATGCAGGAGATGATAAAGAAAGAGGTGAGGAGTTATATGCAGCAGAATG GGATGTGTTATTCTCATGGAAGTGATGATGGGTTCAGGAACGCTGCGGTGAAACGAATTGGGATTAGCAGAATCGATTCG TAG
Protein sequence (LotjaGi2g1v0405100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTNTNTNTSITKMDRIKGPWSPEEDEALQRLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTAEEDDT IIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASFMMDDHNAPPLKRSVSAGAATPVSTGLYMNPPSPGSPSG SDVSESSVPVCTPSAAAAAHVFRPVPRTGGVLPPVETTSSSNDPPTSLSLSLPGVDSTSEETAPAPAQPPSAIPLLPIMA APVQLVVPPQPQVQDPSTAVMQKVSGPFNFSAELLGVMQEMIKKEVRSYMQQNGMCYSHGSDDGFRNAAVKRIGISRIDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| PANTHER | 13 | 250 | 238 | 8.8E-120 | – | |
| PANTHER | 13 | 250 | 238 | 8.8E-120 | ||
| ProSiteProfiles | 13 | 68 | 56 | 28.052 | ||
| SUPERFAMILY | 15 | 111 | 97 | 2.43E-32 | ||
| Gene3D | 17 | 69 | 53 | 1.0E-23 | – | |
| SMART | 17 | 66 | 50 | 5.4E-18 | ||
| Pfam | 18 | 63 | 46 | 1.8E-17 | ||
| CDD | 20 | 62 | 43 | 1.31599E-17 | ||
| SMART | 69 | 117 | 49 | 5.1E-14 | ||
| ProSiteProfiles | 70 | 119 | 50 | 20.302 | ||
| Pfam | 72 | 113 | 42 | 8.1E-14 | ||
| Gene3D | 72 | 118 | 47 | 2.3E-19 | – | |
| CDD | 72 | 115 | 44 | 1.00613E-11 | ||
| MobiDBLite | 143 | 168 | 26 | - | – | |
| MobiDBLite | 185 | 231 | 47 | - | – | |
| MobiDBLite | 193 | 225 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0405100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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