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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0406400 |
| Transcript ID | LotjaGi2g1v0406400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pimeloyl-[acyl]-carrier protein] methyl ester esterase; TAIR: AT4G37470.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q9SZU7|KAI2_ARATH Probable esterase KAI2; TrEMBL-Plants: tr|G7K3X2|G7K3X2_MEDTR Sigma factor sigb regulation rsbq-like protein; Found in the gene: LotjaGi2g1v0406400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90345274..90346477) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGATAGTGGAGGAAGCTCACAACGTGAAAGTTCTAGGATCAGGTACTAGGGCTATCGTTCTTGCTCATGGATTCGG CACGGACCAGTCCCTATGGAAACACTTCGTACCTTACCTCACCAACGATTTTCGTGTCATCCTCTACGACAACATGGGTG CTGGAACAACCAACCCTGAGTACTTCGATTTCGAGCGTCACTCAAGCTTAGAAGGCTATGCCTACGATTTGCTTTCGATT TTGGAAGAGCTTCGTGTCGATTCGTGCATCTTCGTCGGCCACTCTGTTTCCGCCATGATCGGCGCTGTTGCTTCCATTTC ACGCCCTGATCTCTTCTCCAAAATCATCATGGTTGGAGCTTCCCCCAGGTAATTCAATTCAACCAATTGAAAACTGAAAT TGAAATCGTTGATTGTGAAATTAAAGCTTAAATAAACTTCTCAACAACAAGAAATCTTTGTTTATTGTCAAAAGAATAAA CAAACAATTATCTATGACTTTGGCATTTAAACAAACACTTGACCTGCATCGTTTCATGGCGTGATGATTTTCTTCCGCAA GGTATTTGAACGACGTGAATTACTATGGAGGATTTGAGCAGGAAGATTTGAACCAATTGTTCGATGCGATGGCGGCGAAT TACAAAGCGTGGTGTTTAGGGTTTGCTCCGCTGGCGGTGGGTGGAGACATGGAGTCGGTGGCGGTGCAGGAGTTTAGCAG AACCTTGTTCAACATGAGGCCGGATATTGCTCTAACCGTTTCGCGGACCATTTTTCAGAGCGACATGAGGGGGATTTTGA GCCTTGTCACTGTGCCGTGCCATATCATACAAGCGCAGAAGGACATGGCGGTTCCGGTGGTGGTTTCTGAGTTTCTCCAC CAGCATCTTGGTGGCGTGTCTATTGTGGAGGTTATGGCAACTGATGGTCATTTGCCGCAGTTGAGCTCGCCGGATATTGT TATTCCGGTTCTGCTCAAGCACATTCATCTTGATATTGAGCCCAGATTGCAAGATGTAAGTAGTGGTGTGTGTTGTGATG TAAAATTTAGTGGGGTGTAATGGGTTACCATCAACTGGTTATTTATGTTTGCTTTGTGTCGTTTAATTGTAGTAAAGGTA GGGTTCGATTCAAGCTGAAGAGCTAGAATCTATATCCAACTTTAGTCATTATTCAGATTTATGTGTATGGAAAAACTGTA TTAA
CDS sequence (LotjaGi2g1v0406400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGATAGTGGAGGAAGCTCACAACGTGAAAGTTCTAGGATCAGGTACTAGGGCTATCGTTCTTGCTCATGGATTCGG CACGGACCAGTCCCTATGGAAACACTTCGTACCTTACCTCACCAACGATTTTCGTGTCATCCTCTACGACAACATGGGTG CTGGAACAACCAACCCTGAGTACTTCGATTTCGAGCGTCACTCAAGCTTAGAAGGCTATGCCTACGATTTGCTTTCGATT TTGGAAGAGCTTCGTGTCGATTCGTGCATCTTCGTCGGCCACTCTGTTTCCGCCATGATCGGCGCTGTTGCTTCCATTTC ACGCCCTGATCTCTTCTCCAAAATCATCATGGTTGGAGCTTCCCCCAGGTATTTGAACGACGTGAATTACTATGGAGGAT TTGAGCAGGAAGATTTGAACCAATTGTTCGATGCGATGGCGGCGAATTACAAAGCGTGGTGTTTAGGGTTTGCTCCGCTG GCGGTGGGTGGAGACATGGAGTCGGTGGCGGTGCAGGAGTTTAGCAGAACCTTGTTCAACATGAGGCCGGATATTGCTCT AACCGTTTCGCGGACCATTTTTCAGAGCGACATGAGGGGGATTTTGAGCCTTGTCACTGTGCCGTGCCATATCATACAAG CGCAGAAGGACATGGCGGTTCCGGTGGTGGTTTCTGAGTTTCTCCACCAGCATCTTGGTGGCGTGTCTATTGTGGAGGTT ATGGCAACTGATGGTCATTTGCCGCAGTTGAGCTCGCCGGATATTGTTATTCCGGTTCTGCTCAAGCACATTCATCTTGA TATTGAGCCCAGATTGCAAGATTAA
Protein sequence (LotjaGi2g1v0406400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGIVEEAHNVKVLGSGTRAIVLAHGFGTDQSLWKHFVPYLTNDFRVILYDNMGAGTTNPEYFDFERHSSLEGYAYDLLSI LEELRVDSCIFVGHSVSAMIGAVASISRPDLFSKIIMVGASPRYLNDVNYYGGFEQEDLNQLFDAMAANYKAWCLGFAPL AVGGDMESVAVQEFSRTLFNMRPDIALTVSRTIFQSDMRGILSLVTVPCHIIQAQKDMAVPVVVSEFLHQHLGGVSIVEV MATDGHLPQLSSPDIVIPVLLKHIHLDIEPRLQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 271 | 271 | 2.1E-176 | – | |
| PANTHER | 1 | 271 | 271 | 2.1E-176 | – | |
| Gene3D | 1 | 266 | 266 | 5.1E-69 | ||
| SUPERFAMILY | 10 | 264 | 255 | 7.21E-42 | ||
| Pfam | 20 | 257 | 238 | 6.4E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0406400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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