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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0408500 |
Transcript ID | LotjaGi2g1v0408500.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Formin-like protein; TAIR: AT5G67470.1 formin homolog 6; Swiss-Prot: sp|Q9FJX6|FH6_ARATH Formin-like protein 6; TrEMBL-Plants: tr|A0A151SC56|A0A151SC56_CAJCA Formin-like protein; Found in the gene: LotjaGi2g1v0408500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90571483..90572630) extracted from Lotus japonicus Gifu genome v1.2.
TGTTATTTTTTTGATGAACCAGGGAATCCTGAAGGTTTGGGTGCTGAGCTGTTGGAAACCCTAGTAAAGATGGCTCCTAC TAAAGAGGAAGAGATAAAACTTAGAAACTACGATGGCGATCTCTCAAAACTTGGAACCGCTGAAAGATTTCTTAAAGCTG TGCTTGATATACCATTTGCATTTAAAAGAGTTGAAGCTATGCTATACAGAGCGAACTTCGATTCAGAAGTCAATTACCTT AGGAAGTCTTTTCAAACCCTGGAGGTCTGGAAAACTTTTTTCAGTCCCTTGTTATCTTTGATCTCATGTTTTCTGAGTAA CTAACTAACCAATCAATTACTAATATCTTTCAGGCAGCAAGTGAAGAATTAAGGAACAGCCGGCTATTCTTCAAACTACT TGAAGCTGTTCTCAGGACAGGAAACAGAATGAATGTTGGCACTAATAGAGGTGATGCTAAAGCTTTCAAACTGGAAACCC TATTAAAACTTGTAGATATAAAGGGAACAGATGGAAAGACCACATTACTTCACTTTGTGGTCCAAGAGATCATTAGATCT GAAGGTGCAGGAGATGAATCTGCAAATGGGAATGTTCAGTACCGAATGGAATCCAAATTCAATGAGGACGAGTTTAAGAA GCAAGGATTGCAGGTTGTGGCTGGGCTCAGTAGAGACCTTATTAGTGTCAAAAAATCAGCAGGAATGGACTCAGATGTCT TGAGAGGCTATCTTTCAAAGCTCGAAACGGGGCTTGAAAAAGTGAGACTGGTTTTGCAATATGAGAAGCCAGATAAGCAA GGCAATTTCTTTAACTCCACTAAGCTATTTCTGAAATATGCTGAGGATGAAATAGTGAGGCTTAAGGCTGATGAGAGAAA GGCCTTATTGCTTGTGAAAGAAGTTACAGAATACTTTCATGGGAATGTAGCAAAGGAAGAAGCCCACCCTTTCAGAATTT TTATGATTGTAAGAGACTTTCTAAATATTCTGGATCTAGTGTGCAAAGAAGTTGGAAGAATGCATGATAGAATTGTTGGC GGTTCTTCCAGATCCTTCCAAATAGCTTCCAGTGCCTCTTTACCGGTTCTGAACAGGTATAATGCAAGACAAGATGGGAG CTCGGATGAGGAAAGCTCATCCCCCTAG
CDS sequence (LotjaGi2g1v0408500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCTACTAAAGAGGAAGAGATAAAACTTAGAAACTACGATGGCGATCTCTCAAAACTTGGAACCGCTGAAAGATT TCTTAAAGCTGTGCTTGATATACCATTTGCATTTAAAAGAGTTGAAGCTATGCTATACAGAGCGAACTTCGATTCAGAAG TCAATTACCTTAGGAAGTCTTTTCAAACCCTGGAGGCAGCAAGTGAAGAATTAAGGAACAGCCGGCTATTCTTCAAACTA CTTGAAGCTGTTCTCAGGACAGGAAACAGAATGAATGTTGGCACTAATAGAGGTGATGCTAAAGCTTTCAAACTGGAAAC CCTATTAAAACTTGTAGATATAAAGGGAACAGATGGAAAGACCACATTACTTCACTTTGTGGTCCAAGAGATCATTAGAT CTGAAGGTGCAGGAGATGAATCTGCAAATGGGAATGTTCAGTACCGAATGGAATCCAAATTCAATGAGGACGAGTTTAAG AAGCAAGGATTGCAGGTTGTGGCTGGGCTCAGTAGAGACCTTATTAGTGTCAAAAAATCAGCAGGAATGGACTCAGATGT CTTGAGAGGCTATCTTTCAAAGCTCGAAACGGGGCTTGAAAAAGTGAGACTGGTTTTGCAATATGAGAAGCCAGATAAGC AAGGCAATTTCTTTAACTCCACTAAGCTATTTCTGAAATATGCTGAGGATGAAATAGTGAGGCTTAAGGCTGATGAGAGA AAGGCCTTATTGCTTGTGAAAGAAGTTACAGAATACTTTCATGGGAATGTAGCAAAGGAAGAAGCCCACCCTTTCAGAAT TTTTATGATTGTAAGAGACTTTCTAAATATTCTGGATCTAGTGTGCAAAGAAGTTGGAAGAATGCATGATAGAATTGTTG GCGGTTCTTCCAGATCCTTCCAAATAGCTTCCAGTGCCTCTTTACCGGTTCTGAACAGGTATAATGCAAGACAAGATGGG AGCTCGGATGAGGAAAGCTCATCCCCCTAG
Protein sequence (LotjaGi2g1v0408500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPTKEEEIKLRNYDGDLSKLGTAERFLKAVLDIPFAFKRVEAMLYRANFDSEVNYLRKSFQTLEAASEELRNSRLFFKL LEAVLRTGNRMNVGTNRGDAKAFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGAGDESANGNVQYRMESKFNEDEFK KQGLQVVAGLSRDLISVKKSAGMDSDVLRGYLSKLETGLEKVRLVLQYEKPDKQGNFFNSTKLFLKYAEDEIVRLKADER KALLLVKEVTEYFHGNVAKEEAHPFRIFMIVRDFLNILDLVCKEVGRMHDRIVGGSSRSFQIASSASLPVLNRYNARQDG SSDEESSSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 327 | 327 | 1.2E-209 | – | |
SUPERFAMILY | 1 | 288 | 288 | 2.49E-69 | – | |
PANTHER | 1 | 327 | 327 | 1.2E-209 | – | |
ProSiteProfiles | 1 | 304 | 304 | 37.69 | ||
SMART | 1 | 293 | 293 | 1.0E-36 | ||
Pfam | 1 | 278 | 278 | 7.7E-80 | ||
Gene3D | 1 | 291 | 291 | 7.3E-68 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0408500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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