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LotjaGi2g1v0409200.1

Overview

Field Value
Gene ID LotjaGi2g1v0409200
Transcript ID LotjaGi2g1v0409200.1
Lotus japonicus genome version Gifu v1.2
Description Outer mitochondrial membrane protein porin; TAIR: AT5G67500.3 voltage dependent anion channel 2; Swiss-Prot: sp|Q9FJX3|VDAC2_ARATH Mitochondrial outer membrane protein porin 2; TrEMBL-Plants: tr|Q6W2J2|Q6W2J2_LOTJA VDAC2.1; Found in the gene: LotjaGi2g1v0409200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:90627590..90632285) extracted from Lotus japonicus Gifu genome v1.2.

GTTGTCCCCACACGATATTCGCTCTCGAAGATCAACGGCTGAAATCGACCAGGATCAGCAACGATTCATCGCCACACGCA CGATCGGAAACAACCGCTTCAACGCATCATCGCAAATAATACAAATGCACTCTTTTTACATTTAAATAAAAAATGTGAGA AAAATTACAAGGCCTCATTTCCTCGCCACACCCTTCTTCGTCAAGCTCAGTGCATCAGAATCAATCAATCAAGATCTCTC TCTCTCTCTCTCTCTTCGAAAGCGAAAATGAGCAAAGGACCAGGTCTCTTCTCCGATATCGGCAAGAAACCCAGAGGTCA GTGAACCAACACGCTCTATCTTCTTCTTTCTCAATCTGTTATGGATTCGATTACACTTTTCTCGAAGCTTGAATCGAAAT TGATTGTAACCGTTTTGATTTGTTGTTCGTTCTTGTAGATCTTTTGACCAAGGACTACAGCTCCGATCAGAAACTCACCG TTTCTTCCTACAGCACCGCCGGAGTGGTAACCTATTCGATTTTCCACTTTATTCATATTTATAGATTAATTTAATTGCAT TTTTGGTCAAGATCTAGCGTGTGTCAGTTAATTACTATGCATTTGGAATTTCATGATGACAGTTGCGATTCCTCTTGAAG CTTCATTACCTCTTGTATCGATTTGTGCTAGATGAATCACGAATCATGAAATTGCGTCCGAAAATTTATTTATCCTGAGA TCGCATATATCTAGTTGTTTGTTAACTGTTAAGCCTGTTTTCTGTGATTCGCTACTACGTCAAGTTAATCTATATTCTGT AGGCAAATTTATCACTGCGTATAAAATAAAATAGAAGGAAATGTAGGATGCTGGATGTGTTGTCACTTACGTTGCTCAGA TTTTTCTATTTGAACTTGTTTTGCGGTGTTCTATTAATTTTGTGGATTTTTTTTCGCTTACGGCTTGTTCCCCTATGTCA TAAGAGGTATAGCATGTGGATTTCAAAATAGGTATAGTGTGTTTGAATGCGCATCTGATTCCCTTAAAATCGCTTGCAGC TATATATTGTAGCTTTGAGCAAAGCGCACATTGGAGCGATAACAATCCAATGCTGGCATGTAATGTGATTGGATATGTGA GTCCCTGTAGACCACCAATAAATATTGAAGTTCTTCTACAGAAAGTGAGAAAACAACCTTTATCCTCTTATAACATGATT GTTTCAATCAAAATGCTAATTTCTTAGCTGGGATTTAAGTTGGTGAACAATATTGTATGAGCATATCTGCTGAGACAACA GGGAGACTGAATGTGTAGTAGAGCCAATTGGATTGTATGTACTATGTAGACTTGGGGAGAATGGTTTTTAGTTCTTTATG TAACATAGCATGGCTTGGAGGCAAATCTAATGTTGTTTAAAATAGCATTTCCTTGAATGGGTGTTGGGAATCAGTAATTC AAGAGAGGTAGATCCAGAAATGAATCAGTAAAGAAAATAATTTAAAAAGGGAGTTCTTAACAGTCATTGTGGATGGAAGT CATTAAGCAGGTGGTGCTATTTTCATGCCTTGCATAGAATTCTGATGTATACGGTATACCGTTTAAGTTGATAAATTGTT TTTCATGACAAGCGTTTTCAGTTGTGTACCTTTACCAATAAACTGTCGGTGAGTGGAAATGCCACTTCAGTGCATAAGAA AGATTACAAAAGAAAGTGTAATTGTAGACTTAGAGGTTGAGAGAAATTGCTTAATAGTTGTAATTTGATTTGAAAAGATC TATGTAATTGTAACTAGAACAAAAAAAATGCAAGATTGATCACTGGAAATAGAAAACAGGAAATAGATTCAACCCTTACG GCTTTGTTTATAGGAGAACTTAATATTGACAAGGCGCACTGATGATATATTTTCTTCTCTAATGCAAGTTTATGTTGAAT TCATAACTGTTGTTCGCTTTTTGTATGGGTCACTCAGTTGCTGTTAATTTTGTATTTCCATAATTGCTTTTAGAATTTAT CCCTGGCTGTTGCCAACTGCATGCATATGGGGTTGAAGATTTGGAGATAACGACTATGAAGGCTTTTCTAAGTTTGTTTG TATCTGAAGGAAATTACCTCTTACTTCATTTATTTTATCGCAAACACAATCAACCATAACCTACCTAGCATGAATGATAA TTTATTCTTAATGTAGTAGTGTAGTATTTTGATCTAAGTGGCAGCTGTTTTGAGTTTTATTTATTTGTTTACAGATATTC AGGGATGGTTATCTATTAACATTTCTATGATTTCCTTTAAGTTGTCTATGACTTGAATTATTTGTTCATTTTAAATTCTT GGCTTTTTTAGTTCTAACTATGTGTGACAGTGCAGGGTCGCTTGAGCTTGTTCTCTAGGAGCAAAACGTTCCTAACATTC ATTCCAATATGACTTTTTCTTTTTACCTTTCAGGCCCTTACTTCAACTGCTGTGAAAAAAGGAGGACTTTCAGTTGGGGA TGTTGCAGCACTGTACAAGTATAAGAACACCCTTATTGATGTCAAACTTGACACAGCATCCATTGTGGGTTACTCTGTCT TCTTAGATTATAATAAGAATAGCGCATGTTCTTGAGTATCTTGTTTGCATACTCTTATAATTTTGTTTCTTTTTTTTCCT TCAGATTTCAACGACCCTCACATTCACCGACCTTCTTCCATCCACCAAGGCTATTGCTTCATTTAAGCTGCCTGATTATA ATTCTGGCAAGGTACATAATTTTGCACCATCTCTCTAGAAAATTTGACTGACTTCCCTACATTATTTCTGAAAATTTGTC TGATCTGTCTTTGGCAGTTAGAGGTTCAATACTTCCATGACCATGCTACCTTAACAGCAGCTGCTGCACTGAACCAATCC CCTATCATTGATGTGTCTGCCACCTTTGGTACCCCAGTGATTGCAGTTGGTGCTGAGGCAGGCTATGATACTTCATCCGG TGGGTTTACTAAATACACTGCTGGGATTAGTGTCACAAAACCTGATGCATCTGCTTCTATAATCCTGTAAGATTCTTTTA CCCGTAAAATATTTCTTTCTTCTATGTTCCAAATCAAACAACCAATAGTGTTTAAAGGCTGCAAATTGATATTGAACATG TTCTTTCCAATCAGTGGCGACAAGGGTGACAGCATTAAAGCATCATACCTCCATCATCTGGACCAACTTAAGAAGAGTGC TGCTGTGGCAGAGATCACTAGAAAGTTCTCAACAAATGAGAACACTTTCACAGTTGGAGGGTCTTTTGCTATTGACCATC TGACACAAGTCAGAGCAAGGCTCAACAATCATGGAAAGCTTGGGGCACTCCTGCAGCATGAGATCATACCAAAGTCAGTG CTGACCATTTCTAGTGAGGTTGATACCAAGGCCCTGGATAAAAATCCCAGGTTTGGCTTGGCAATCGCCCTCAAACCTTG AAGGTTTTTTCTTCATTAACGGTTGATTGGTATTCCAAACGTAATTCAAATTTTTTGGTAGTCCTTGAAAGGAGGGCAGA ATAATTAGTTCCCTGGATGAGCTTTTCTAGGTTATTCCGAAATGGATGAATTTTTTCAATGACTTTTAAATCACCAATGG CTTCTGTTTGACATTTTTTTTGTTAATTTTCTGCTTTCCTTCTTGCATTGTAGTAGACAATCTGAGATGTGGATGTCCTT TTCTCCAGGAGGATTTTAATCGTCTGTTTTTCTTAAAATTTTATTTTTACCATTGTTCTCTGTCGGATGTTGTTTTGGTG GCGTTTACAGGACCAGATTAACCTTACAAATTAAAGCAATAAAGTTAATTCAGGTTGGTTTGATTAATTTGTTCACTGTC TTTGTTTAATTAAACCAATCAATAGGGAAAAAACAGGTTGGTTTGATCAATTTAGTGAATAACTGCAAATTGATATTGAA CAATAGTGAAAATTGAAAAACATGTATCATATAAATCAAACAGACTAATTAGGTTAGGGAAACTATTTTGATTTTTTCCT GATGAAGTAAGTGGGCTAAAAGTGCCGAAGGAAAAAACAAACAAACTACAAGCCTAAAAAATAAATGGTTGGAGCACTAT CTAAAAAAATTGGACTGAACAAAAACTAGGTAGAGCCTCAAACATCCATAGGCACCATTGCACCAACAAGTATAAACCAT ATTTAGTCAAACCATCTTTTACCGAATTTGCCTCCCTGGAGATATGACCTGAAGATATGTAACATGAGAGAAGTTCGCAA GGACAAATTTGATCTGACCCACCAACCGCGTGCAAGGGTGAGGAAGCATATGATTCTGATAACTTTTCTGGAGTCCCCTT TGATAGAGCAACCTTAATCCCAACAAAATACCCCATAGTTCTGCATGAAGCATCGAACAAGAGCCTAACTTCTTTGAGAA AGCAAAAATGAAGATACCCAAATGATCCTGCTCCATTTGAATTAAGCTTCATCCAGTCTTGCTCAAGAGGAAATACATGC AATAGTCTCATCTTCACCACAGAATGGGCAGTCACTTATCATTACCCTTGTAAATAAATTCGTCTACATGAATCGAACAC TAAAAATCGTGTCATCAACCATTACCCTTTTTCGATTTGTGTCATTCATCAAATAATCTTATATAACTTTTAGGCAAGTA AGTTTAAAAAAAAAAACCTTTTAGGCAAGTAGCTATGAATAAGCTAAATATATCAT
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0409200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGCAAAGGACCAGGTCTCTTCTCCGATATCGGCAAGAAACCCAGAGATCTTTTGACCAAGGACTACAGCTCCGATCA GAAACTCACCGTTTCTTCCTACAGCACCGCCGGAGTGGCCCTTACTTCAACTGCTGTGAAAAAAGGAGGACTTTCAGTTG GGGATGTTGCAGCACTGTACAAGTATAAGAACACCCTTATTGATGTCAAACTTGACACAGCATCCATTATTTCAACGACC CTCACATTCACCGACCTTCTTCCATCCACCAAGGCTATTGCTTCATTTAAGCTGCCTGATTATAATTCTGGCAAGTTAGA GGTTCAATACTTCCATGACCATGCTACCTTAACAGCAGCTGCTGCACTGAACCAATCCCCTATCATTGATGTGTCTGCCA CCTTTGGTACCCCAGTGATTGCAGTTGGTGCTGAGGCAGGCTATGATACTTCATCCGGTGGGTTTACTAAATACACTGCT GGGATTAGTGTCACAAAACCTGATGCATCTGCTTCTATAATCCTTGGCGACAAGGGTGACAGCATTAAAGCATCATACCT CCATCATCTGGACCAACTTAAGAAGAGTGCTGCTGTGGCAGAGATCACTAGAAAGTTCTCAACAAATGAGAACACTTTCA CAGTTGGAGGGTCTTTTGCTATTGACCATCTGACACAAGTCAGAGCAAGGCTCAACAATCATGGAAAGCTTGGGGCACTC CTGCAGCATGAGATCATACCAAAGTCAGTGCTGACCATTTCTAGTGAGGTTGATACCAAGGCCCTGGATAAAAATCCCAG GTTTGGCTTGGCAATCGCCCTCAAACCTTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0409200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSKGPGLFSDIGKKPRDLLTKDYSSDQKLTVSSYSTAGVALTSTAVKKGGLSVGDVAALYKYKNTLIDVKLDTASIISTT LTFTDLLPSTKAIASFKLPDYNSGKLEVQYFHDHATLTAAAALNQSPIIDVSATFGTPVIAVGAEAGYDTSSGGFTKYTA GISVTKPDASASIILGDKGDSIKASYLHHLDQLKKSAAVAEITRKFSTNENTFTVGGSFAIDHLTQVRARLNNHGKLGAL LQHEIIPKSVLTISSEVDTKALDKNPRFGLAIALKP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11743:SF29
1 276 276 2.7E-151 –
PANTHER
PTHR11743
1 276 276 2.7E-151
IPR001925
Gene3D
G3DSA:2.40.160.10
3 276 274 6.9E-58
IPR023614
CDD
cd07306
5 275 271 7.8477E-78 –
Pfam
PF01459
5 269 265 5.0E-61
IPR027246

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005741
Cellular component Mitochondrial outer membrane The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope.
Subterm of
GO:0008308
Molecular function Voltage-gated anion channel activity Enables the transmembrane transfer of an anion by a voltage-gated channel. An anion is a negatively charged ion. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.
Subterm of
GO:0055085
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
Subterm of
GO:0098656
Biological process Anion transmembrane transport The process in which an anion is transported across a membrane.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0409200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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