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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0417900 |
| Transcript ID | LotjaGi2g1v0417900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-amylase; TAIR: AT4G17090.1 chloroplast beta-amylase; Swiss-Prot: sp|O23553|BAM3_ARATH Beta-amylase 3, chloroplastic; TrEMBL-Plants: tr|A0A151TJ74|A0A151TJ74_CAJCA Beta-amylase; Found in the gene: LotjaGi2g1v0417900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91635245..91638787) extracted from Lotus japonicus Gifu genome v1.2.
TTGAGAACCAAAGTGACCATTTACCCACAATTCTATGGTGGGAACATGTTACAAACTAGTTCACATATTTCTAACCACTT TTTCTATACACATTTTTCTCCTCTCTTTCTCTTTCTCTTGTAAAGCAAATCTAGCACAACTAGTGTCGATAAAACACTGT CAAATAGGTTAGATTTTTTGCATTTTTCCACTTTTCAACATGGACCTACCAAGACTTTCAAAAAAAAAAAACATGGACCT ACCAAGGTTGTCAACTTCAATTCCCAAACCCAAACTAGATCTTCTTTCCAATAAATAAACCCGAATCATCTTCAGCAATT CCTACAAATCATTATTCTACCTCCATCTTCTACTGCAAACAGAAAAACAGAAGGAAAAAAAATGGCTCTAATACTTCCTT CTTCATTTTCTTTAGTTAATAACAAAGAAACCAAAGTCCTCCTAGCTTTTGATGATGTTTCTTCCAAGGTTTTAGTATTT CCAAAAGTGCAACCATCTCTTAGTCTCCGAGCAAAGAGTTCCATGATGGCAGAAGCACCCATCACACTGGAGAAAATTCA TGCCCCATTGGCTGTTCATGGCCTCAGTGATTCAAAGAGTGTACCATCGTTTGTGATGCTGCCACTAGACACAGTGACAG TAGGAGGAACTTTGAATAAGCCAAGGGTGATGAATGTTAGTTTGATGGCCCTGAAGAGTGCAGGGGTTGAAGGAGTGATG GTGGATGTTTGGTGGGGTTTGGTGGAAAAAGATGGGCCTTTCAAGTACAACTGGGAAGGCTATGCTGAGCTTTTTCAGAT GGTGCAAAAGCATGGCTTGAAGCTTCAGGTTGTTATGTCTTTCCATCAATGTGGAGGAAATGTTGGAGACTCCTGCAGGT ACCAAATTAAAGACCACTTCTTTTAACTTTTTAATGCCTAGTTTAAGCTGATGTTTGGATCAACTTTTTTGTCTTGCATA ATCAATTCTAACACCCATAAGTTACTTATTGCCTGTTTGGATCACTGTTTGTCAGTAAAATTGATTTTGGTGAATTTTAG AATTATTAGCATAACTCAATATTGTATCCTTTTCTGTTTTAGTACCTTGTTATCCTTGAACTCTCCAATGTTATGGAATG TGAGACAGCTAGTAGAAAATCAAATGAGCATAGTTGTTACCTTAAGTATGATGATGATAAATTAATATAATTTCTCAGTG ACTAATTTTCTTTTTATTGCATTTTTTAGCATTCCTCTACCCCCTTGGGTGCTGGAAGAAATCAGCGAGAACCCAGATCT GGTTTACACAGACAGATCCGGGAGGAGGAATCCTGAATACATCTCCTTGGGGTGTGATTCAATGCCTGTTCTAAGAGGAA GGACACCCCTTCAGGTGTACTCTGATTACATGAGGAGCTTTCGCGACAGATTCATATATTATTTGGGCAATGTTATCAGT GTAAGTAGTAAATCAACTTGTGCTTCAATCTTGGGTTAGCAAACAGATTATGGAATAAACTCAGGATAAAATTCTCAGAT AGTGTCTAGTGTTATTGCATTAAGTGCATTAGCAACCACAAATGTTATCATGTTGATAAAAATTTGGAGGGGTGTCAATA AGATGACTGACTAATTATCAGATCATGGAACAAAAAATAGTCCTTTTTACCTTTGAAATTGAAGTTTCAACTTTCAACCA TATCCATTAATATATTGTTATAAGGGGAATGGAAGGAGAACACTTATGATTGATAATAAACTAGCACTTGTGAGATATTA AGTTCTAAGACCAAATTCATTTGCAGGAAGTACAAGTGGGGTTGGGTCCTTGTGGGGAGCTAAGATATCCATCTTATCCA GAAAGTGAAGGAACTTGGAGGTTTCCTGGAATTGGAGAATTCCAGTGCTATGACAAGGTATGAAAAAAAGGCATTAGTTT TTAACATTTTTTGATAAATGGTCCAAAATCATGTTAATGTGACATATGTTTCATTTCAATTAGACCATAGATCTCAATCT TTATGATAACAAGGACACTTCACAGATGGCAGAATTTCAAAATGTCTAGTTACTAATTGCATGTTTGGAAACTCTTGTAT TATTGATTCTGAACCCATAATCATTTCTGAACAGAAGCTTCTTTTAGTAGCTTCTATTTCAGAATTAATTCAGATGAACG AGAATTGTAAGTTAGCCCATGAGTGCATGGGCTAAATTCCTGTATTGCTTACTAAATTGTGTTGTTTCTTTGTGATGCAG TATATGAGAGCTTCATTGGAAGCATCAGCTGAGGCCATCGGAAAGAAAGACTGGGGAAGAAGTGGACCCCATGACTCAGG CCAGTACAATCAATTTCCTGAGGATACTGGATTTTTCAAAAAGGAAGGTACATGGAACACTGAATATGGACACTTCTTCC TGAATTGGTACTCCCATAAACTGCTTGGACATGGTGACAAAATCCTTCTTTCTGCTAAAGCAATATTCCAGTTAACTGGG GTTAAACTATCTGCCAAAGTAGCTGGAATTCATTGGCATTACAAAGCAAGGTCACATGCCACTGAACTAACTGCAGGCTA CTACAACACAAGGTTTCATGATGGTTACCTACCAATAGCCCAAATGCTTGCAAGACATGGTGCTGTGTTCAATTTTACCT GCATGGAAATGAAGGACAGAGAACAACCTGAACATGCTAATTGCTCCCCGGAAGGATTGGTTCATCAAGTGCAGATGGCA GCCAGAACTGCAGGGGTAGAACTTGCTGGGGAGAATGCATTGGAGAGATATGATGCAGGTGCTTTCGCTCAAGTTTTGTC AACAAGAAACTCTGTTGATGGATTGGGTGCATTTACTTATCTGAGAATGAATAAGAGGTTGTTTGAGGGTGATAACTGGC GGCACTTTGTGGACTTTGTAAGAAGCATGTCTGAGGGTGGTCTGATTGAAAGGCTCCCAGAAGCTGATTCCTTTGGGACA GATCTTTACGTTGGACACATCATCAAAGAAATTGAAAAGAAGAAAAATCAAGAGGCTATTCTTGTCTGAACAGCCATTTC GTGGTCAGCCGTTTATCGCTTAGTGCGAGCATCCGCGATAAAAGGATTAGCCACTGCTGTCAATGGTGGATATACAGTGG TCTCAACCAGAAGAGGCTGCTCTTGTGTGAACACCAATAGCAGCTTGTAGATGGGTCTTTGTGTATAGTTAAGTGTATAA AAGCTCTCGTTATCCGCGAGTTTGAGGGAGGGGCCAAACCAACTTTGTTGATCTAATGTGGACAGTCTTACCTTGGATTT TTGCAAGACGCTGATTCCATGCTTCGAACCTGTATTAAATTTTATAGGGAAGAAAAAAAAAAGAGTAGCAAGAGAAAAGG AGGAAGATAGAATTCTATGGTGTGTATACACAATAAAAATGGCATTTCCTTGCCAAAACCTGAAATTATCAGGAAAATAT TACTTATTTGGCATGAGTGTCATTCTGTTTGTTTCAATATATTATGCATTAAACAAGAGCATTTCAAACTTTTCAAGGAG GACATGAGAAAAACTTATTATTC
CDS sequence (LotjaGi2g1v0417900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTAATACTTCCTTCTTCATTTTCTTTAGTTAATAACAAAGAAACCAAAGTCCTCCTAGCTTTTGATGATGTTTC TTCCAAGGTTTTAGTATTTCCAAAAGTGCAACCATCTCTTAGTCTCCGAGCAAAGAGTTCCATGATGGCAGAAGCACCCA TCACACTGGAGAAAATTCATGCCCCATTGGCTGTTCATGGCCTCAGTGATTCAAAGAGTGTACCATCGTTTGTGATGCTG CCACTAGACACAGTGACAGTAGGAGGAACTTTGAATAAGCCAAGGGTGATGAATGTTAGTTTGATGGCCCTGAAGAGTGC AGGGGTTGAAGGAGTGATGGTGGATGTTTGGTGGGGTTTGGTGGAAAAAGATGGGCCTTTCAAGTACAACTGGGAAGGCT ATGCTGAGCTTTTTCAGATGGTGCAAAAGCATGGCTTGAAGCTTCAGGTTGTTATGTCTTTCCATCAATGTGGAGGAAAT GTTGGAGACTCCTGCAGCATTCCTCTACCCCCTTGGGTGCTGGAAGAAATCAGCGAGAACCCAGATCTGGTTTACACAGA CAGATCCGGGAGGAGGAATCCTGAATACATCTCCTTGGGGTGTGATTCAATGCCTGTTCTAAGAGGAAGGACACCCCTTC AGGTGTACTCTGATTACATGAGGAGCTTTCGCGACAGATTCATATATTATTTGGGCAATGTTATCAGTGAAGTACAAGTG GGGTTGGGTCCTTGTGGGGAGCTAAGATATCCATCTTATCCAGAAAGTGAAGGAACTTGGAGGTTTCCTGGAATTGGAGA ATTCCAGTGCTATGACAAGTATATGAGAGCTTCATTGGAAGCATCAGCTGAGGCCATCGGAAAGAAAGACTGGGGAAGAA GTGGACCCCATGACTCAGGCCAGTACAATCAATTTCCTGAGGATACTGGATTTTTCAAAAAGGAAGGTACATGGAACACT GAATATGGACACTTCTTCCTGAATTGGTACTCCCATAAACTGCTTGGACATGGTGACAAAATCCTTCTTTCTGCTAAAGC AATATTCCAGTTAACTGGGGTTAAACTATCTGCCAAAGTAGCTGGAATTCATTGGCATTACAAAGCAAGGTCACATGCCA CTGAACTAACTGCAGGCTACTACAACACAAGGTTTCATGATGGTTACCTACCAATAGCCCAAATGCTTGCAAGACATGGT GCTGTGTTCAATTTTACCTGCATGGAAATGAAGGACAGAGAACAACCTGAACATGCTAATTGCTCCCCGGAAGGATTGGT TCATCAAGTGCAGATGGCAGCCAGAACTGCAGGGGTAGAACTTGCTGGGGAGAATGCATTGGAGAGATATGATGCAGGTG CTTTCGCTCAAGTTTTGTCAACAAGAAACTCTGTTGATGGATTGGGTGCATTTACTTATCTGAGAATGAATAAGAGGTTG TTTGAGGGTGATAACTGGCGGCACTTTGTGGACTTTGTAAGAAGCATGTCTGAGGGTGGTCTGATTGAAAGGCTCCCAGA AGCTGATTCCTTTGGGACAGATCTTTACGTTGGACACATCATCAAAGAAATTGAAAAGAAGAAAAATCAAGAGGCTATTC TTGTCTGA
Protein sequence (LotjaGi2g1v0417900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALILPSSFSLVNNKETKVLLAFDDVSSKVLVFPKVQPSLSLRAKSSMMAEAPITLEKIHAPLAVHGLSDSKSVPSFVML PLDTVTVGGTLNKPRVMNVSLMALKSAGVEGVMVDVWWGLVEKDGPFKYNWEGYAELFQMVQKHGLKLQVVMSFHQCGGN VGDSCSIPLPPWVLEEISENPDLVYTDRSGRRNPEYISLGCDSMPVLRGRTPLQVYSDYMRSFRDRFIYYLGNVISEVQV GLGPCGELRYPSYPESEGTWRFPGIGEFQCYDKYMRASLEASAEAIGKKDWGRSGPHDSGQYNQFPEDTGFFKKEGTWNT EYGHFFLNWYSHKLLGHGDKILLSAKAIFQLTGVKLSAKVAGIHWHYKARSHATELTAGYYNTRFHDGYLPIAQMLARHG AVFNFTCMEMKDREQPEHANCSPEGLVHQVQMAARTAGVELAGENALERYDAGAFAQVLSTRNSVDGLGAFTYLRMNKRL FEGDNWRHFVDFVRSMSEGGLIERLPEADSFGTDLYVGHIIKEIEKKKNQEAILV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 531 | 531 | 0.0 | – | |
| PANTHER | 1 | 531 | 531 | 0.0 | ||
| Gene3D | 68 | 528 | 461 | 2.3E-199 | – | |
| SUPERFAMILY | 71 | 502 | 432 | 1.06E-183 | ||
| Pfam | 77 | 492 | 416 | 1.8E-164 | ||
| PRINTS | 108 | 122 | 15 | 1.3E-70 | ||
| PRINTS | 129 | 147 | 19 | 1.3E-70 | ||
| PRINTS | 151 | 172 | 22 | 1.3E-70 | ||
| ProSitePatterns | 155 | 163 | 9 | - | ||
| PRINTS | 243 | 265 | 23 | 1.3E-70 | ||
| PRINTS | 318 | 337 | 20 | 1.3E-70 | ||
| PRINTS | 354 | 370 | 17 | 1.3E-70 | ||
| PRINTS | 371 | 382 | 12 | 1.3E-70 | ||
| PRINTS | 389 | 412 | 24 | 1.3E-70 | ||
| PRINTS | 426 | 448 | 23 | 1.3E-70 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Polysaccharide catabolic process | The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. | ||
| Molecular function | Beta-amylase activity | Catalysis of the reaction: (1,4-alpha-D-glucosyl)(n+1) + H2O = (1,4-alpha-D-glucosyl)(n-1) + alpha-maltose. This reaction is the hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides so as to remove successive maltose units from the non-reducing ends of the chains. |
Expression pattern of LotjaGi2g1v0417900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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